Mon May 22 01:55:56 UTC 2023  I: starting to build maq/bookworm/i386 on jenkins on '2023-05-22 01:55'
Mon May 22 01:55:56 UTC 2023  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/12423/console.log
Mon May 22 01:55:56 UTC 2023  I: Downloading source for bookworm/maq=0.7.1-9
--2023-05-22 01:55:56--  http://cdn-fastly.deb.debian.org/debian/pool/main/m/maq/maq_0.7.1-9.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1948 (1.9K) [text/prs.lines.tag]
Saving to: ‘maq_0.7.1-9.dsc’

     0K .                                                     100%  114M=0s

2023-05-22 01:55:56 (114 MB/s) - ‘maq_0.7.1-9.dsc’ saved [1948/1948]

Mon May 22 01:55:56 UTC 2023  I: maq_0.7.1-9.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: maq
Binary: maq
Architecture: any
Version: 0.7.1-9
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Charles Plessy <plessy@debian.org>
Homepage: http://maq.sourceforge.net/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/maq
Vcs-Git: https://salsa.debian.org/med-team/maq.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev
Package-List:
 maq deb science optional arch=any
Checksums-Sha1:
 ca51faa2f2a24e81fe7a38d75613a84433c69af8 398368 maq_0.7.1.orig.tar.gz
 eb5ee8fc8d88decaa5911424186dac1d88ca32eb 11372 maq_0.7.1-9.debian.tar.xz
Checksums-Sha256:
 efb8d66ae9319b260db7e56fd17d2f2299f1dee84522848a2205d9f069eb00ba 398368 maq_0.7.1.orig.tar.gz
 7aa4d0c1a28dd0f961c3dbec79c69f7b1b1d642a71f5ca717a388d3b2ec3a969 11372 maq_0.7.1-9.debian.tar.xz
Files:
 894adf6f73abee5767d55a1fb623004f 398368 maq_0.7.1.orig.tar.gz
 e736a72d72a6dd78bb72cf35729cae3b 11372 maq_0.7.1-9.debian.tar.xz

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Mon May 22 01:55:56 UTC 2023  I: Checking whether the package is not for us
Mon May 22 01:55:56 UTC 2023  I: Starting 1st build on remote node ionos2-i386.debian.net.
Mon May 22 01:55:56 UTC 2023  I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Mon May 22 01:57:14 UTC 2023  I: Deleting $TMPDIR on ionos2-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun May 21 13:56:02 -12 2023
I: pbuilder-time-stamp: 1684720562
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [maq_0.7.1-9.dsc]
I: copying [./maq_0.7.1.orig.tar.gz]
I: copying [./maq_0.7.1-9.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Nov 15 22:45:18 2020 -12
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./maq_0.7.1-9.dsc: no acceptable signature found
dpkg-source: info: extracting maq in maq-0.7.1
dpkg-source: info: unpacking maq_0.7.1.orig.tar.gz
dpkg-source: info: unpacking maq_0.7.1-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_prevent_-64_option.patch
dpkg-source: info: applying gcc-4.7.patch
dpkg-source: info: applying mayhem.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/13807/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 '
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='7c3ec31042714f23ad384b591c084068'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='13807'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/pbuilderrc_HNuN --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/b1 --logfile b1/build.log maq_0.7.1-9.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://78.137.99.97:3128'
I: uname -a
  Linux ionos2-i386 5.10.0-23-686-pae #1 SMP Debian 5.10.179-1 (2023-05-12) i686 GNU/Linux
I: ls -l /bin
  total 6036
  -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   38404 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   17892 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   42920 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   67496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   79816 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  162024 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  136916 Jan  5 01:20 dash
  -rwxr-xr-x 1 root root  137160 Sep 20  2022 date
  -rwxr-xr-x 1 root root  100364 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  108940 Sep 20  2022 df
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   87760 Mar 22 22:20 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 domainname -> hostname
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24 02:43 egrep
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24 02:43 fgrep
  -rwxr-xr-x 1 root root   84272 Mar 22 22:20 findmnt
  -rwsr-xr-x 1 root root   30240 Mar 22 20:38 fusermount
  -rwxr-xr-x 1 root root  218680 Jan 24 02:43 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root  100952 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   21916 Dec 19 01:33 hostname
  -rwxr-xr-x 1 root root   75756 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   55600 Mar 22 23:43 login
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  214568 Mar 22 22:20 lsblk
  -rwxr-xr-x 1 root root   96328 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   84008 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   63016 Mar 22 22:20 more
  -rwsr-xr-x 1 root root   58912 Mar 22 22:20 mount
  -rwxr-xr-x 1 root root   13856 Mar 22 22:20 mountpoint
  -rwxr-xr-x 1 root root  157932 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2 18:25 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 23 09:24 rbash -> bash
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   75720 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   51080 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   22308 Nov  2  2022 run-parts
  -rwxr-xr-x 1 root root  133224 Jan  5 07:55 sed
  lrwxrwxrwx 1 root root       4 Jan  5 01:20 sh -> dash
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   87976 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   83492 Mar 22 22:20 su
  -rwxr-xr-x 1 root root   38792 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  598456 Apr  6 02:25 tar
  -rwxr-xr-x 1 root root   13860 Nov  2  2022 tempfile
  -rwxr-xr-x 1 root root  120776 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   34664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   17892 Mar 22 20:38 ulockmgr_server
  -rwsr-xr-x 1 root root   30236 Mar 22 22:20 umount
  -rwxr-xr-x 1 root root   38760 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  162152 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   71216 Mar 22 22:20 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/13807/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.9 MB of archives. After unpacking 74.0 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Fetched 19.9 MB in 1s (32.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ...
Unpacking libmagic1:i386 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ...
Unpacking libuchardet0:i386 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_i386.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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I: Building the package
I: Running cd /build/maq-0.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../maq_0.7.1-9_source.changes
dpkg-buildpackage: info: source package maq
dpkg-buildpackage: info: source version 0.7.1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
configure.ac:2: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:2: You should use the 'AC_CONFIG_HEADERS' macro instead.
./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from...
aclocal.m4:445: AM_CONFIG_HEADER is expanded from...
configure.ac:2: the top level
configure.ac:39: warning: The macro `AC_STDC_HEADERS' is obsolete.
configure.ac:39: You should run autoupdate.
./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from...
configure.ac:39: the top level
configure.ac:39: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:39: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from...
configure.ac:39: the top level
configure.ac:42: warning: AC_OUTPUT should be used without arguments.
configure.ac:42: You should run autoupdate.
configure.ac:6: installing './compile'
   dh_auto_configure
	./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for zlib.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
   dh_auto_build
	make -j8
make[1]: Entering directory '/build/maq-0.7.1'
make  all-am
make[2]: Entering directory '/build/maq-0.7.1'
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o const.o const.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seq.o seq.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bfa.o bfa.c
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o read.o read.cc
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta2bfa.o fasta2bfa.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastq2bfq.o fastq2bfq.c
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o merge.o merge.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o match_aux.o match_aux.cc
bfa.c: In function 'nst_load_bfa1':
bfa.c:31:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   31 |         fread(bfa1->name, sizeof(char), len, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c:32:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   32 |         fread(&bfa1->ori_len, sizeof(int), 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c:33:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   33 |         fread(&bfa1->len, sizeof(int), 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c:35:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   35 |         fread(bfa1->seq, sizeof(bit64_t), bfa1->len, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c:37:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   37 |         fread(bfa1->mask, sizeof(bit64_t), bfa1->len, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c: In function 'nst_bfa_len':
bfa.c:46:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   46 |                 fread(&len, sizeof(int), 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bfa.c:48:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   48 |                 fread(&len, sizeof(int), 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fastq2bfq.c: In function 'fastq2bfq':
fastq2bfq.c:30:12: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types]
   30 |         fp = gzopen(str, "w");
      |            ^
fastq2bfq.c:36:28: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types]
   36 |                         fp = gzopen(str, "w");
      |                            ^
fastq2bfq.c:47:25: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types]
   47 |                 gzwrite(fp, &i, sizeof(int));
      |                         ^~
      |                         |
      |                         struct gzFile_s **
In file included from /usr/include/zlib.h:34,
                 from fastq2bfq.c:1:
/usr/include/zlib.h:1448:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1448 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len));
      |                             ^~
fastq2bfq.c:48:25: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types]
   48 |                 gzwrite(fp, name, sizeof(char) * i);
      |                         ^~
      |                         |
      |                         struct gzFile_s **
/usr/include/zlib.h:1448:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1448 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len));
      |                             ^~
fastq2bfq.c:49:25: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types]
   49 |                 gzwrite(fp, &l, sizeof(int));
      |                         ^~
      |                         |
      |                         struct gzFile_s **
/usr/include/zlib.h:1448:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1448 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len));
      |                             ^~
fastq2bfq.c:50:25: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types]
   50 |                 gzwrite(fp, seq.s, sizeof(char) * l);
      |                         ^~
      |                         |
      |                         struct gzFile_s **
/usr/include/zlib.h:1448:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1448 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len));
      |                             ^~
fastq2bfq.c:53:33: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types]
   53 |                         gzclose(fp);
      |                                 ^~
      |                                 |
      |                                 struct gzFile_s **
/usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1631 | ZEXTERN int ZEXPORT    gzclose OF((gzFile file));
      |                                ^~
fastq2bfq.c:62:25: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types]
   62 |                 gzclose(fp);
      |                         ^~
      |                         |
      |                         struct gzFile_s **
/usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1631 | ZEXTERN int ZEXPORT    gzclose OF((gzFile file));
      |                                ^~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o match.o match.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_mapping.o sort_mapping.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assemble.o assemble.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pileup.o pileup.cc
match.cc: In function 'int alt_cal_mm(bit64_t)':
match.cc:58:15: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses]
   58 |         x = x + (x >> 4) & 0x0F0F0F0F0F0F0F0FLLU;
      |             ~~^~~~~~~~~~
match.cc:61:15: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses]
   61 |         x = x + (x >> 32) & 0x0000007F;
      |             ~~^~~~~~~~~~~
match.cc: In function 'int alt_cal_err(bit64_t, bit64_t)':
match.cc:67:15: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses]
   67 |         x = x + (x >> 4) & 0x0F0F0F0F0F0F0F0FLLU;
      |             ~~^~~~~~~~~~
match.cc:70:15: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses]
   70 |         x = x + (x >> 32) & 0x0000007F;
      |             ~~^~~~~~~~~~~
match.cc: In function 'void process_candidate(const required_option_t*, int, bit64_t, match_data_t*, ref_canlist_t*)':
match.cc:284:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ref_canlist_t'; use assignment or value-initialization instead [-Wclass-memaccess]
  284 |         memset(list, 0, sizeof(ref_canlist_t));
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
match.cc:49:16: note: 'struct ref_canlist_t' declared here
   49 | typedef struct {
      |                ^
match.cc: In function 'void match_search(const match_aux_t*, match_data_t*, const nst_bfa1_t*, int, ref_canlist_t*)':
match.cc:292:17: warning: variable 'n_reads' set but not used [-Wunused-but-set-variable]
  292 |         bit32_t n_reads;
      |                 ^~~~~~~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mapcheck.o mapcheck.cc
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_pos.o get_pos.c
match.cc: In function 'int ma_match(int, char**)':
match.cc:525:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  525 |                         fscanf(tmpfp, "%s", adaptor);
      |                         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
sort_mapping.cc: In function 'int ma_make_pair(const match_aux_t*, const match_info_t*, const match_info_t*, pair_info_t*)':
sort_mapping.cc:59:75: warning: suggest parentheses around arithmetic in operand of '^' [-Wparentheses]
   59 |                 p->i1 = (((m1->i1>>24)+(m2->i1>>24))<<24) | (m1->i1^m2->i1&0xffffff);
      |                                                                     ~~~~~~^~~~~~~~~
assemble.cc: In function 'base_call_aux_t* assemble_cns_collect(assemble_pos_t*, const assemble_aux_t*)':
assemble.cc:106:77: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
  106 |                 if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff;
      |                                                                         ~~~~^~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assopt.o assopt.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aux_utils.o aux_utils.c
mapcheck.cc: In function 'int ma_mapcheck(int, char**)':
mapcheck.cc:60:24: warning: variable 'fpout' set but not used [-Wunused-but-set-variable]
   60 |         FILE *fp_bfa, *fpout;
      |                        ^~~~~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rbcc.o rbcc.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o subsnp.o subsnp.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pair_stat.o pair_stat.cc
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_soa.o indel_soa.cc
rbcc.cc: In function 'hash_map_char<int>* cns_load_dbSNP(FILE*)':
rbcc.cc:21:35: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
   21 |                 sprintf(str1, "%s.%d", name, pos);
      |                                   ^~
In file included from /usr/include/stdio.h:906,
                 from rbcc.cc:7:
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'hash_map_char<int>* cns_load_dbSNP(FILE*)' at rbcc.cc:21:10:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
indel_soa.cc: In function 'void fill_counter(bit32_t*, int, nst_bfa1_t*, gzFile)':
indel_soa.cc:42:61: warning: suggest parentheses around '-' inside '<<' [-Wparentheses]
   42 |                         if (int(m1->seq[k]>>6) == int(s>>(31-j<<1)&3)) ++score;
      |                                                           ~~^~
indel_soa.cc:56:61: warning: suggest parentheses around '-' inside '<<' [-Wparentheses]
   56 |                         if (int(m1->seq[k]>>6) == int(s>>(31-j<<1)&3)) ++score;
      |                                                           ~~^~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o maqmap.o maqmap.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o maqmap_conv.o maqmap_conv.c
subsnp.cc: In function 'hash_map_char<char*>* ma_load_snp(FILE*)':
subsnp.cc:20:34: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
   20 |                 sprintf(key, "%s.%d", name, pos);
      |                                  ^~
In file included from /usr/include/stdio.h:906,
                 from subsnp.cc:2:
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'hash_map_char<char*>* ma_load_snp(FILE*)' at subsnp.cc:20:10:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o altchr.o altchr.cc
subsnp.cc: In function 'hash_set_char* ma_load_snp_set(FILE*)':
subsnp.cc:35:34: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
   35 |                 sprintf(key, "%s.%d", name, pos);
      |                                  ^~
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'hash_set_char* ma_load_snp_set(FILE*)' at subsnp.cc:35:10:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o submap.o submap.c
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rmdup.o rmdup.cc
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o simulate.o simulate.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o genran.o genran.c
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_pe.o indel_pe.cc
subsnp.cc: In function 'void maq_simucns_core(FILE*, gzFile, FILE*)':
subsnp.cc:190:42: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
  190 |                         sprintf(key, "%s.%d", name, pos);
      |                                          ^~
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'hash_map_char<unsigned char>* load_simu_snp(FILE*)' at subsnp.cc:190:11,
    inlined from 'void maq_simucns_core(FILE*, gzFile, FILE*)' at subsnp.cc:202:45:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
subsnp.cc: In function 'void maq_simucns_core(FILE*, gzFile, FILE*)':
subsnp.cc:186:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
  186 |                                 sprintf(key, "%s.%d", name, i);
      |                                                  ^~
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'hash_map_char<unsigned char>* load_simu_snp(FILE*)' at subsnp.cc:186:12,
    inlined from 'void maq_simucns_core(FILE*, gzFile, FILE*)' at subsnp.cc:202:45:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
simulate.c: In function 'maq_simutrain':
simulate.c:83:15: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types]
   83 |         fpout = gzopen(argv[1], "w");
      |               ^
simulate.c:86:17: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types]
   86 |         gzwrite(fpout, fqc, sizeof(fqc_t));
      |                 ^~~~~
      |                 |
      |                 struct gzFile_s **
In file included from /usr/include/zlib.h:34,
                 from simulate.c:6:
/usr/include/zlib.h:1448:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1448 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, voidpc buf, unsigned len));
      |                             ^~
simulate.c:87:17: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types]
   87 |         gzclose(fpout);
      |                 ^~~~~
      |                 |
      |                 struct gzFile_s **
/usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **'
 1631 | ZEXTERN int ZEXPORT    gzclose OF((gzFile file));
      |                                ^~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stdaln.o stdaln.c
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_call.o indel_call.cc
stdaln.c: In function 'aln_local_core':
stdaln.c:534:32: warning: variable 'b' set but not used [-Wunused-but-set-variable]
  534 |         int gap_open, gap_ext, b;
      |                                ^
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eland2maq.o eland2maq.cc
In file included from /usr/include/string.h:535,
                 from maqmap.h:23,
                 from simulate.c:11:
In function 'memset',
    inlined from 'simustat_core' at simulate.c:386:2:
/usr/include/i386-linux-gnu/bits/string_fortified.h:59:10: warning: '__builtin___memset_chk' offset [16, 31] is out of the bounds [0, 16] of object 'tc' with type 'int[2][2]' [-Warray-bounds]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
simulate.c: In function 'simustat_core':
simulate.c:381:19: note: 'tc' declared here
  381 |         int i, k, tc[2][2];
      |                   ^~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o csmap2ntmap.o csmap2ntmap.cc
rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)':
rmdup.cc:46:32: warning: 'char* __builtin___strncpy_chk(char*, const char*, unsigned int, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-truncation]
   46 |                         strncpy(buf, name, tl-1);
      |                                ^
In function 'char* trim_name(char*, char*)',
    inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21,
    inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:102:23:
rmdup.cc:42:40: note: length computed here
   42 |                 int c1, c2, tl = strlen(name);
      |                                  ~~~~~~^~~~~~
rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)':
rmdup.cc:46:32: warning: 'char* __builtin___strncpy_chk(char*, const char*, unsigned int, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-truncation]
   46 |                         strncpy(buf, name, tl-1);
      |                                ^
In function 'char* trim_name(char*, char*)',
    inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21,
    inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:94:37:
rmdup.cc:42:40: note: length computed here
   42 |                 int c1, c2, tl = strlen(name);
      |                                  ~~~~~~^~~~~~
rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)':
rmdup.cc:46:32: warning: 'char* __builtin___strncpy_chk(char*, const char*, unsigned int, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-truncation]
   46 |                         strncpy(buf, name, tl-1);
      |                                ^
In function 'char* trim_name(char*, char*)',
    inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21,
    inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:92:31:
rmdup.cc:42:40: note: length computed here
   42 |                 int c1, c2, tl = strlen(name);
      |                                  ~~~~~~^~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o break_pair.o break_pair.c
In file included from break_pair.c:2:
break_pair.c: In function 'breakpair':
break_pair.c:16:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   16 |         assert(fp = gzopen(str, "r"));
      |                ^~
g++ -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o glfgen.o glfgen.cc
eland2maq.cc: In function 'void eland2maq_core(FILE*, FILE*, gzFile)':
eland2maq.cc:88:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   88 |                 fscanf(fp_eland, "%s", str);
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~
eland2maq.cc:96:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   96 |                 fscanf(fp_eland, "%s", str);
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~
eland2maq.cc:99:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   99 |                         fscanf(fp_eland, "%u%u%u%s%u%s", tmp, tmp+1, tmp+2, str, tmp+3, str2);
      |                         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eland2maq.cc: In function 'hash_map_char<unsigned int>* read_list(FILE*)':
eland2maq.cc:33:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   33 |                 fscanf(fp, "%s", str);
      |                 ~~~~~~^~~~~~~~~~~~~~~
eland2maq.cc: In function 'void novo2maq_core(FILE*, FILE*, gzFile)':
eland2maq.cc:323:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  323 |             fgets( str2, 4096, fp_novo );
      |             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
glfgen.cc: In function 'glf1_t* glfgen1_core(assemble_pos_t*, const assemble_aux_t*, bit8_t)':
glfgen.cc:43:77: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
   43 |                 if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff;
      |                                                                         ~~~~^~~~~~~~~
In file included from stdaln.c:29:
stdaln.h:61:23: warning: 'free' called on pointer '*(int **)((char *)(void *) ivtmp.535_40)' with nonzero offset 4 [-Wfree-nonheap-object]
   61 | #       define MYFREE free
stdaln.c:726:17: note: in expansion of macro 'MYFREE'
  726 |                 MYFREE(s_array[i]);
      |                 ^~~~~~
eland2maq.cc: In function 'void export2maq_core(FILE*, FILE*, gzFile)':
eland2maq.cc:563:35: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
  563 |                 sprintf(str2, "%s_%d:%d:%d:%d:%d", str, ti[0], ti[1], ti[2], ti[3], ti[4]);
      |                                   ^~
In file included from /usr/include/stdio.h:906,
                 from eland2maq.cc:9:
In function 'int sprintf(char*, const char*, ...)',
    inlined from 'void export2maq_core(FILE*, FILE*, gzFile)' at eland2maq.cc:563:10:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 11 and 1084 bytes into a destination of size 1024
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++  -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -ffile-prefix-map=/build/maq-0.7.1=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o maq main.o const.o seq.o bfa.o read.o fasta2bfa.o fastq2bfq.o merge.o match_aux.o match.o sort_mapping.o assemble.o pileup.o mapcheck.o get_pos.o assopt.o aux_utils.o rbcc.o subsnp.o pair_stat.o indel_soa.o maqmap.o maqmap_conv.o altchr.o submap.o rmdup.o simulate.o genran.o indel_pe.o stdaln.o indel_call.o eland2maq.o csmap2ntmap.o break_pair.o glfgen.o -lm -lz 
make[2]: Leaving directory '/build/maq-0.7.1'
make[1]: Leaving directory '/build/maq-0.7.1'
   dh_auto_test
	make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1
make[1]: Entering directory '/build/maq-0.7.1'
make[1]: Leaving directory '/build/maq-0.7.1'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/maq/
	make -j8 install DESTDIR=/build/maq-0.7.1/debian/maq AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/maq-0.7.1'
make[2]: Entering directory '/build/maq-0.7.1'
 /bin/mkdir -p '/build/maq-0.7.1/debian/maq/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
 /bin/mkdir -p '/build/maq-0.7.1/debian/maq/usr/bin'
 /usr/bin/install -c scripts/maq.pl scripts/farm-run.pl scripts/maq_plot.pl scripts/maq_eval.pl '/build/maq-0.7.1/debian/maq/usr/bin'
  /usr/bin/install -c maq '/build/maq-0.7.1/debian/maq/usr/bin'
make[2]: Leaving directory '/build/maq-0.7.1'
make[1]: Leaving directory '/build/maq-0.7.1'
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   debian/rules override_dh_installman
make[1]: Entering directory '/build/maq-0.7.1'
dh_installman
# when installing via debian/manpages the .pl is stripped and the
# files will end up in /usr/share/man/pl/man1
cp -a debian/mans/*.1 debian/maq/usr/share/man/man1
make[1]: Leaving directory '/build/maq-0.7.1'
   dh_lintian
   dh_perl
   dh_link
   dh_strip_nondeterminism
   debian/rules override_dh_compress
make[1]: Entering directory '/build/maq-0.7.1'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/build/maq-0.7.1'
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: package maq: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package maq: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'maq' in '../maq_0.7.1-9_i386.deb'.
dpkg-deb: building package 'maq-dbgsym' in '../maq-dbgsym_0.7.1-9_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../maq_0.7.1-9_i386.buildinfo
 dpkg-genchanges --build=binary -O../maq_0.7.1-9_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/13807 and its subdirectories
I: Current time: Sun May 21 13:57:13 -12 2023
I: pbuilder-time-stamp: 1684720633
Mon May 22 01:57:14 UTC 2023  I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Mon May 22 01:57:15 UTC 2023  I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Mon May 22 01:57:45 UTC 2023  I: Deleting $TMPDIR on ionos16-i386.debian.net.
Mon May 22 01:57:45 UTC 2023  I: maq_0.7.1-9_i386.changes:
Format: 1.8
Date: Mon, 16 Nov 2020 11:16:20 +0100
Source: maq
Binary: maq maq-dbgsym
Architecture: i386
Version: 0.7.1-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 maq        - maps short fixed-length polymorphic DNA sequence reads to referen
Changes:
 maq (0.7.1-9) unstable; urgency=medium
 .
   * Standards-Version: 4.5.0 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Secure URI in copyright format (routine-update)
   * Remove trailing whitespace in debian/changelog (routine-update)
   * Remove trailing whitespace in debian/copyright (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Set fields Upstream-Name, Upstream-Contact in debian/copyright.
   * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
     present in machine-readable debian/copyright).
   * watch file standard 4 (routine-update)
Checksums-Sha1:
 f98aa9525896df5f01ff128a3637d63e0c7da9be 298048 maq-dbgsym_0.7.1-9_i386.deb
 a8e9917edaeac4606e61e269062cdc83651da611 5062 maq_0.7.1-9_i386.buildinfo
 c4a632977104893b27fa002cec4e182eef2d4389 314516 maq_0.7.1-9_i386.deb
Checksums-Sha256:
 8411d3abd61895c4384feafeed77ef68df784aceb7fd634215b53d0db12ae3e2 298048 maq-dbgsym_0.7.1-9_i386.deb
 d04b4948426d3b4a2e382bfefdd1a3d105b65ebe47149489af6894c5a66d51dc 5062 maq_0.7.1-9_i386.buildinfo
 7963942f34b6a88ff09391a0a5b1931c85a3480dd834005fe2167eb7e7b0e810 314516 maq_0.7.1-9_i386.deb
Files:
 e8b061c458ea50a3ba6d2b443cf02274 298048 debug optional maq-dbgsym_0.7.1-9_i386.deb
 f43460dea3ca3f501b12c7864cc216ec 5062 science optional maq_0.7.1-9_i386.buildinfo
 381e2ae9c22ed651b4fb686c9e2d24ce 314516 science optional maq_0.7.1-9_i386.deb
Mon May 22 01:57:46 UTC 2023  I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/maq_0.7.1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/maq_0.7.1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/maq_0.7.1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/b1/maq_0.7.1-9_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.eQnjiCIK/b2/maq_0.7.1-9_i386.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.404s)
       0.404s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.027s)
       0.027s     12 calls    diffoscope.comparators.binary.FilesystemFile
       0.000s     10 calls    abc.DotChangesFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Mon May 22 01:57:48 UTC 2023  I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Mon May 22 01:57:48 UTC 2023  I: maq from bookworm built successfully and reproducibly on i386.
Mon May 22 01:57:49 UTC 2023  I: Submitting .buildinfo files to external archives:
Mon May 22 01:57:49 UTC 2023  I: Submitting 8.0K	b1/maq_0.7.1-9_i386.buildinfo.asc
Mon May 22 01:57:50 UTC 2023  I: Submitting 8.0K	b2/maq_0.7.1-9_i386.buildinfo.asc
Mon May 22 01:57:51 UTC 2023  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon May 22 01:57:51 UTC 2023  I: Done submitting .buildinfo files.
Mon May 22 01:57:51 UTC 2023  I: Removing signed maq_0.7.1-9_i386.buildinfo.asc files:
removed './b1/maq_0.7.1-9_i386.buildinfo.asc'
removed './b2/maq_0.7.1-9_i386.buildinfo.asc'