Thu May 11 23:19:46 UTC 2023 I: starting to build seqmagick/bookworm/i386 on jenkins on '2023-05-11 23:19'
Thu May 11 23:19:46 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/13887/console.log
Thu May 11 23:19:46 UTC 2023 I: Downloading source for bookworm/seqmagick=0.8.4-3
--2023-05-11 23:19:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/seqmagick/seqmagick_0.8.4-3.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2118 (2.1K) [text/prs.lines.tag]
Saving to: ‘seqmagick_0.8.4-3.dsc’
0K .. 100% 92.0M=0s
2023-05-11 23:19:48 (92.0 MB/s) - ‘seqmagick_0.8.4-3.dsc’ saved [2118/2118]
Thu May 11 23:19:48 UTC 2023 I: seqmagick_0.8.4-3.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: seqmagick
Binary: seqmagick
Architecture: all
Version: 0.8.4-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/fhcrc/seqmagick/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/seqmagick
Vcs-Git: https://salsa.debian.org/med-team/seqmagick.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest <!nocheck>, python3-biopython, python3-pygtrie
Package-List:
seqmagick deb science optional arch=all
Checksums-Sha1:
f6597c3d31ba9013c562b4a457da84670b30b7a0 668090 seqmagick_0.8.4.orig.tar.gz
bd9fd25d965b78443c2d5e1c748a960f1212ee99 5236 seqmagick_0.8.4-3.debian.tar.xz
Checksums-Sha256:
d7c583199bf09f05ea7ea833b4d97bd9cea01436d7320f80c5f6492a016b3b2f 668090 seqmagick_0.8.4.orig.tar.gz
c5cec9d74447e526d1330e0aeea9db4434f8a6cb0b52a1dc7dc3e42263b59dc4 5236 seqmagick_0.8.4-3.debian.tar.xz
Files:
0c7b6732ea910867139652bcafaa8f35 668090 seqmagick_0.8.4.orig.tar.gz
86ba2a74e7bd70593446d2115710e18b 5236 seqmagick_0.8.4-3.debian.tar.xz
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Thu May 11 23:19:48 UTC 2023 I: Checking whether the package is not for us
Thu May 11 23:19:48 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net.
Thu May 11 23:19:48 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net.
Thu May 11 23:21:05 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Jun 12 17:42:52 -12 2024
I: pbuilder-time-stamp: 1718257372
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [seqmagick_0.8.4-3.dsc]
I: copying [./seqmagick_0.8.4.orig.tar.gz]
I: copying [./seqmagick_0.8.4-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Dec 22 03:34:40 2021 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./seqmagick_0.8.4-3.dsc: no acceptable signature found
dpkg-source: info: extracting seqmagick in seqmagick-0.8.4
dpkg-source: info: unpacking seqmagick_0.8.4.orig.tar.gz
dpkg-source: info: unpacking seqmagick_0.8.4-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying biopython_1.71_dual_coding_support.patch
dpkg-source: info: applying pytest.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/59298/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='6b29e11b56aa49ac832441a1de935683'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='59298'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/pbuilderrc_gtv4 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/b1 --logfile b1/build.log seqmagick_0.8.4-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos16-i386 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 2023 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 2023 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 2023 more
-rwsr-xr-x 1 root root 58912 Mar 22 2023 mount
-rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 2023 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 2023 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 2023 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/59298/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-pytest, python3-biopython, python3-pygtrie
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-biopython; however:
Package python3-biopython is not installed.
pbuilder-satisfydepends-dummy depends on python3-pygtrie; however:
Package python3-pygtrie is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pygtrie{a} python3-pytest{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs
0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded.
Need to get 56.8 MB of archives. After unpacking 200 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 mailcap all 3.70+nmu1 [32.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 mime-support all 3.66 [10.9 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 13 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B]
Get: 80 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 python3-renderpm i386 3.6.12-1+b1 [81.4 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 python3-reportlab-accel i386 3.6.12-1+b1 [39.4 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 python3-reportlab all 3.6.12-1 [564 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-biopython i386 1.80+dfsg-4+b1 [1589 kB]
Get: 90 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 91 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 92 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB]
Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 94 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB]
Get: 95 http://deb.debian.org/debian bookworm/main i386 python3-pygtrie all 2.2-2 [16.8 kB]
Get: 96 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB]
Get: 97 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 56.8 MB in 8s (7048 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libjbig0:i386 (2.1-6.1) ...
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Selecting previously unselected package libraqm0:i386.
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Unpacking libtiff6:i386 (4.5.0-5) ...
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Unpacking python3-pkg-resources (66.1.1-1) ...
Selecting previously unselected package python3-numpy.
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Unpacking python3-numpy (1:1.24.2-1) ...
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Unpacking python3-renderpm:i386 (3.6.12-1+b1) ...
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Unpacking python3-pil:i386 (9.4.0-1.1+b1) ...
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Unpacking python3-reportlab (3.6.12-1) ...
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Unpacking python3-biopython (1.80+dfsg-4+b1) ...
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Unpacking python3-setuptools (66.1.1-1) ...
Setting up media-types (10.0.0) ...
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Setting up libgraphite2-3:i386 (1.3.14-1) ...
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Setting up bsdextrautils (2.38.1-5+b1) ...
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libmagic1:i386 (1:5.44-3) ...
Setting up libdeflate0:i386 (1.14-1) ...
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update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libxcb1:i386 (1.15-1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-all (3.11.2-1+b1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.80+dfsg-4+b1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/seqmagick-0.8.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqmagick_0.8.4-3_source.changes
dpkg-buildpackage: info: source package seqmagick
dpkg-buildpackage: info: source version 0.8.4-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/seqmagick-0.8.4'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:548: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
warnings.warn(
running clean
removing '/build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf seqmagick/data
rm -rf seqmagick.egg-info
make[1]: Leaving directory '/build/seqmagick-0.8.4'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:548: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
warnings.warn(
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:548: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
warnings.warn(
running build
running build_py
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick
copying seqmagick/transform.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick
copying seqmagick/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick
copying seqmagick/fileformat.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_transform.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
copying seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/info.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/common.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
copying seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts
copying seqmagick/scripts/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts
copying seqmagick/scripts/cli.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
copying seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
copying seqmagick/test/integration/test_info.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
copying seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
copying seqmagick/test/integration/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
copying seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration
creating /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output4.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input6.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output3.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
copying seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:240: cd /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build; python3.11 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack
rootdir: /build/seqmagick-0.8.4
collected 166 items
seqmagick/test/test_primer_trim.py ............ [ 7%]
seqmagick/test/test_subcommands_backtrans_align.py ......... [ 12%]
seqmagick/test/test_subcommands_common.py ..................s..... [ 27%]
seqmagick/test/test_subcommands_convert.py ...... [ 30%]
seqmagick/test/test_subcommands_quality_filter.py ...................... [ 43%]
.... [ 46%]
seqmagick/test/test_transform.py ....................................... [ 69%]
.................... [ 81%]
seqmagick/test/integration/test_convert.py .ss.............. [ 92%]
seqmagick/test/integration/test_extract_ids.py ..ss.. [ 95%]
seqmagick/test/integration/test_info.py ...s [ 98%]
seqmagick/test/integration/test_mogrify.py .s. [100%]
=============================== warnings summary ===============================
../../../../../usr/lib/python3/dist-packages/Bio/pairwise2.py:278
/usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
warnings.warn(
.pybuild/cpython3_3.11/build/seqmagick/test/test_primer_trim.py::LocatePrimersTestCase::test_bad_order
.pybuild/cpython3_3.11/build/seqmagick/test/test_primer_trim.py::LocatePrimersTestCase::test_basic
.pybuild/cpython3_3.11/build/seqmagick/test/test_primer_trim.py::LocatePrimersTestCase::test_no_forward
.pybuild/cpython3_3.11/build/seqmagick/test/test_primer_trim.py::LocatePrimersTestCase::test_no_reverse
.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_backtrans_align.py::AlignmentMapperTestCase::test_map_alignment
.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_backtrans_align.py::AlignmentMapperTestCase::test_map_alignment_excess_codons
.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_backtrans_align.py::AlignmentMapperTestCase::test_map_alignment_insufficient_codons
/usr/lib/python3/dist-packages/Bio/Seq.py:2136: BiopythonDeprecationWarning: myseq.ungap(gap) is deprecated; please use myseq.replace(gap, "") instead.
warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================== 159 passed, 7 skipped, 8 warnings in 0.82s ==================
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/seqmagick/ -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/seqmagick-0.8.4/debian/seqmagick
/usr/lib/python3/dist-packages/setuptools/dist.py:548: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
warnings.warn(
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running install_lib
creating /build/seqmagick-0.8.4/debian/seqmagick/usr
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/transform.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_transform.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_info.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output4.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input6.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output3.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/__init__.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_mogrify.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_extract_ids.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_info.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/integration/__pycache__/test_convert.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__pycache__
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/__init__.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_primer_trim.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_backtrans_align.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_common.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_quality_filter.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_subcommands_convert.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/__pycache__/test_transform.cpython-311-pytest-7.2.1.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/convert.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/__init__.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/backtrans_align.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/extract_ids.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/convert.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/info.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/primer_trim.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/mogrify.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/quality_filter.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/__pycache__/common.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/info.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/common.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/fileformat.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/__init__.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/fileformat.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/__pycache__/transform.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__pycache__
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts/__init__.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts
creating /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts/__pycache__/__init__.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts/__pycache__/cli.cpython-311.pyc -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__pycache__
copying /build/seqmagick-0.8.4/.pybuild/cpython3_3.11/build/seqmagick/scripts/cli.py -> /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/transform.py to transform.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_backtrans_align.py to test_subcommands_backtrans_align.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_common.py to test_subcommands_common.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_quality_filter.py to test_subcommands_quality_filter.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_primer_trim.py to test_primer_trim.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_transform.py to test_transform.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_convert.py to test_convert.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_info.py to test_info.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_mogrify.py to test_mogrify.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/test_extract_ids.py to test_extract_ids.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/integration/data/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/test/test_subcommands_convert.py to test_subcommands_convert.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/convert.py to convert.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/mogrify.py to mogrify.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/primer_trim.py to primer_trim.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/backtrans_align.py to backtrans_align.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/extract_ids.py to extract_ids.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/info.py to info.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/common.py to common.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/subcommands/quality_filter.py to quality_filter.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/fileformat.py to fileformat.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick/scripts/cli.py to cli.cpython-311.pyc
running install_egg_info
running egg_info
creating seqmagick.egg-info
writing seqmagick.egg-info/PKG-INFO
writing dependency_links to seqmagick.egg-info/dependency_links.txt
writing entry points to seqmagick.egg-info/entry_points.txt
writing requirements to seqmagick.egg-info/requires.txt
writing top-level names to seqmagick.egg-info/top_level.txt
writing manifest file 'seqmagick.egg-info/SOURCES.txt'
reading manifest file 'seqmagick.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
warning: no previously-included files matching '*.png' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'seqmagick.egg-info/SOURCES.txt'
Copying seqmagick.egg-info to /build/seqmagick-0.8.4/debian/seqmagick/usr/lib/python3.11/dist-packages/seqmagick-0.0.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing seqmagick script to /build/seqmagick-0.8.4/debian/seqmagick/usr/bin
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'seqmagick' in '../seqmagick_0.8.4-3_all.deb'.
dpkg-genbuildinfo --build=binary -O../seqmagick_0.8.4-3_i386.buildinfo
dpkg-genchanges --build=binary -O../seqmagick_0.8.4-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/59298 and its subdirectories
I: Current time: Wed Jun 12 17:44:05 -12 2024
I: pbuilder-time-stamp: 1718257445
Thu May 11 23:21:05 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net.
Thu May 11 23:21:05 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net.
Thu May 11 23:23:14 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net.
Thu May 11 23:23:15 UTC 2023 I: seqmagick_0.8.4-3_i386.changes:
Format: 1.8
Date: Wed, 22 Dec 2021 16:31:31 +0100
Source: seqmagick
Binary: seqmagick
Architecture: all
Version: 0.8.4-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
seqmagick - imagemagick-like frontend to Biopython SeqIO
Changes:
seqmagick (0.8.4-3) unstable; urgency=medium
.
[ Étienne Mollier ]
* d/control,pytest.patch: replace nose by pytest.
Checksums-Sha1:
0b1d3e7e12e6715ddd976336591d53c002457144 42528 seqmagick_0.8.4-3_all.deb
f6372a41cdf64d0d7e2e5485804a34f8a5796668 6829 seqmagick_0.8.4-3_i386.buildinfo
Checksums-Sha256:
6b715bb75d63536a54e7c7ac3dcef0b5713b2fd667bb84dea5f3a300a6a978bf 42528 seqmagick_0.8.4-3_all.deb
9f6f03ad29de96524ba72cb7ec842c8a0ed853920915c2cefb76fe191bfa30cd 6829 seqmagick_0.8.4-3_i386.buildinfo
Files:
d2cf316315e02b295b86e94921faacfa 42528 science optional seqmagick_0.8.4-3_all.deb
befd631702ddc41e7b112c5b2f116ae1 6829 science optional seqmagick_0.8.4-3_i386.buildinfo
Thu May 11 23:23:16 UTC 2023 I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/seqmagick_0.8.4-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/seqmagick_0.8.4-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/seqmagick_0.8.4-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/b1/seqmagick_0.8.4-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.WhdgZOW1/b2/seqmagick_0.8.4-3_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.302s)
0.302s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.014s)
0.014s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Thu May 11 23:25:34 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Thu May 11 23:25:34 UTC 2023 I: seqmagick from bookworm built successfully and reproducibly on i386.
Thu May 11 23:25:36 UTC 2023 I: Submitting .buildinfo files to external archives:
Thu May 11 23:25:36 UTC 2023 I: Submitting 8.0K b1/seqmagick_0.8.4-3_i386.buildinfo.asc
Thu May 11 23:25:38 UTC 2023 I: Submitting 8.0K b2/seqmagick_0.8.4-3_i386.buildinfo.asc
Thu May 11 23:25:45 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu May 11 23:25:45 UTC 2023 I: Done submitting .buildinfo files.
Thu May 11 23:25:45 UTC 2023 I: Removing signed seqmagick_0.8.4-3_i386.buildinfo.asc files:
removed './b1/seqmagick_0.8.4-3_i386.buildinfo.asc'
removed './b2/seqmagick_0.8.4-3_i386.buildinfo.asc'