Thu Jul 18 20:15:36 UTC 2024 I: starting to build libgclib/bullseye/amd64 on jenkins on '2024-07-18 20:15' Thu Jul 18 20:15:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/20470/console.log Thu Jul 18 20:15:36 UTC 2024 I: Downloading source for bullseye/libgclib=0.11.10+ds-2 --2024-07-18 20:15:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/libg/libgclib/libgclib_0.11.10%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2176 (2.1K) [text/prs.lines.tag] Saving to: ‘libgclib_0.11.10+ds-2.dsc’ 0K .. 100% 366M=0s 2024-07-18 20:15:36 (366 MB/s) - ‘libgclib_0.11.10+ds-2.dsc’ saved [2176/2176] Thu Jul 18 20:15:36 UTC 2024 I: libgclib_0.11.10+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libgclib Binary: libgclib-dev, libgclib2 Architecture: any Version: 0.11.10+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Michael R. Crusoe Homepage: https://github.com/gpertea/gclib Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libgclib Vcs-Git: https://salsa.debian.org/med-team/libgclib.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: libgclib-dev deb libdevel optional arch=any libgclib2 deb libs optional arch=any Checksums-Sha1: 955d6d1e5ec91e183cc75aa03faadb72988ee4fb 192683 libgclib_0.11.10+ds.orig.tar.gz c90210c7f507ce6b8251cf9f30d76a1ebca811f3 13032 libgclib_0.11.10+ds-2.debian.tar.xz Checksums-Sha256: 883a31b4b29f62d1f9d319e0875b5ca4c3aba033e7b138c64286428f55ae50cc 192683 libgclib_0.11.10+ds.orig.tar.gz ca1d23b6bb9ec5ec1ae364cf5ba44319a133ae825a9f0e98fca8c9ffbdf525b4 13032 libgclib_0.11.10+ds-2.debian.tar.xz Files: fa9a22d3d4fba018662b77a748547c7f 192683 libgclib_0.11.10+ds.orig.tar.gz 7f151d8f323f3dee11c2554ae9aed51c 13032 libgclib_0.11.10+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+WnWIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFhchAAlAaXGlob7RiRbi2dfxR2w0IrtKWQiUr3 AczmqX5DM+N9UcBIMmmxnGLihXDF39AuWDHWbA/G6zEg82M/QVNVjGUe/EOxxn3L i4c234K6tWQjct1giU5NB/+/EdLM4y9RKE3oGZ0UrHKetxBVE4TbZM2UhIRpD9Gu Snu22htMLysljuHLZg08v9BaE1FiLw6HIbS1dnZnt53ZPQ/52LcVVaV4qA2CNN6g C1yO/qoaRJfKiCy/hWr8aHIrY5lXJ+BfYmyMLEinwjp8UAt/MKnrUIHtmoMdkGsB w7lyBuR3KC674W5vvv1E94BfUU//6DJ+zNVCFU2zbEjNQ7TsypgFczbsegmlj5Mh za2PmmlHHnKGC+Ma2caDJhW5EOX+TbTQt4aZq4YvBJ79S8CgP6Gtmwpl7/f+JY6G axaOLCdguA62P4upImN/vM7c38CVB/CNo7aSa8xOB2HbN0pFIlHbKVAhMka1Ojuf SRTwjImJfrIFsWeAOi0Lf1Is9tIgM5OOKpM2w0FM6BCbzHbmxesF8DtLZQ1BByHO B2euVkpmEgLrCSE2pjvblZaVAbud0XlNK5YxqsRc7oMrPgBFlwueryGOj9KPFeXc DnecQIrhZTzp3BhrU5Uvaiy4Fx9g8GoTZ/HJnfufvLmjfhqjqt4x/DiAR+4RZNq0 LRG1O3rvh+0= =3o6U -----END PGP SIGNATURE----- Thu Jul 18 20:15:36 UTC 2024 I: Checking whether the package is not for us Thu Jul 18 20:15:36 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Thu Jul 18 20:15:36 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Thu Jul 18 20:17:03 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 18 08:15:39 -12 2024 I: pbuilder-time-stamp: 1721333739 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgclib_0.11.10+ds-2.dsc] I: copying [./libgclib_0.11.10+ds.orig.tar.gz] I: copying [./libgclib_0.11.10+ds-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.SeUxfydv/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 25 21:56:50 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgclib_0.11.10+ds-2.dsc dpkg-source: info: extracting libgclib in libgclib-0.11.10+ds dpkg-source: info: unpacking libgclib_0.11.10+ds.orig.tar.gz dpkg-source: info: unpacking libgclib_0.11.10+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1217533/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d65412eb39564761a7abd1d82ec671de' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1217533' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2avAgk2N/pbuilderrc_bzZ3 --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2avAgk2N/b1 --logfile b1/build.log libgclib_0.11.10+ds-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-23-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Mar 27 22:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Mar 27 22:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Mar 27 22:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Mar 27 22:09 more -rwsr-xr-x 1 root root 55528 Mar 27 22:09 mount -rwxr-xr-x 1 root root 18664 Mar 27 22:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Mar 27 22:09 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Jan 19 21:59 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Mar 27 22:09 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Mar 27 22:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1217533/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 67.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u2 [146 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 d-shlibs all 0.98 [17.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Fetched 18.3 MB in 3s (6439 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19711 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u2_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3+deb11u1_amd64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../24-libelf1_0.183-1_amd64.deb ... Unpacking libelf1:amd64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.13+20210201-1_amd64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../26-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... 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Setting up bsdextrautils (2.36.1-8+deb11u2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.98) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgclib-0.11.10+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgclib_0.11.10+ds-2_source.changes dpkg-buildpackage: info: source package libgclib dpkg-buildpackage: info: source version 0.11.10+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' if [ -r Makefile -a -r Makefile.am ]; then dh_auto_clean; fi rm -f Makefile Makefile.in aclocal.m4 config.h.in configure debian/autoreconf.after debian/autoreconf.before find . -name "*.o" -delete make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 15955: AX_CXXFLAGS: command not found checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libgclib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' make all-am make[2]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o mdtest.o mdtest.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-codons.lo `test -f 'codons.cpp' || echo './'`codons.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GAlnExtend.lo `test -f 'GAlnExtend.cpp' || echo './'`GAlnExtend.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GapAssem.lo `test -f 'GapAssem.cpp' || echo './'`GapAssem.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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--mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GCdbYank.lo `test -f 'GCdbYank.cpp' || echo './'`GCdbYank.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gdna.lo `test -f 'gdna.cpp' || echo './'`gdna.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GFaSeqGet.lo `test -f 'GFaSeqGet.cpp' || echo './'`GFaSeqGet.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GFastaIndex.lo `test -f 'GFastaIndex.cpp' || echo './'`GFastaIndex.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gff.lo `test -f 'gff.cpp' || echo './'`gff.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gsocket.lo `test -f 'gsocket.cpp' || echo './'`gsocket.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GAlnExtend.cpp -fPIC -DPIC -o .libs/libgclib_la-GAlnExtend.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c codons.cpp -fPIC -DPIC -o .libs/libgclib_la-codons.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GapAssem.cpp -fPIC -DPIC -o .libs/libgclib_la-GapAssem.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gcdb.cpp -fPIC -DPIC -o .libs/libgclib_la-gcdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GBase.cpp -fPIC -DPIC -o .libs/libgclib_la-GBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GCdbYank.cpp -fPIC -DPIC -o .libs/libgclib_la-GCdbYank.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GArgs.cpp -fPIC -DPIC -o .libs/libgclib_la-GArgs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gff.cpp -fPIC -DPIC -o .libs/libgclib_la-gff.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GFaSeqGet.cpp -fPIC -DPIC -o .libs/libgclib_la-GFaSeqGet.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GFastaIndex.cpp -fPIC -DPIC -o .libs/libgclib_la-GFastaIndex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gdna.cpp -fPIC -DPIC -o .libs/libgclib_la-gdna.o GAlnExtend.cpp:21:2: warning: extra ‘;’ [-Wpedantic] 21 | }; | ^ GAlnExtend.cpp:27:2: warning: extra ‘;’ [-Wpedantic] 27 | }; | ^ GAlnExtend.cpp:39:2: warning: extra ‘;’ [-Wpedantic] 39 | }; | ^ GAlnExtend.cpp:45:2: warning: extra ‘;’ [-Wpedantic] 45 | }; | ^ In file included from GList.hh:8, from GAlnExtend.h:7, from GAlnExtend.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = CSeqGap]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = CSeqGap]’ GAlnExtend.h:347:86: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CSeqGap’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from GAlnExtend.cpp:1: GAlnExtend.h:329:7: note: ‘class CSeqGap’ declared here 329 | class CSeqGap { // | ^~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gsocket.cpp -fPIC -DPIC -o .libs/libgclib_la-gsocket.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c codons.cpp -o libgclib_la-codons.o >/dev/null 2>&1 GFastaIndex.cpp: In member function ‘int GFastaIndex::loadIndex(const char*)’: GFastaIndex.cpp:55:22: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint*’ {aka ‘unsigned int*’} [-Wformat=] 55 | sscanf(p, "%d%lld%d%d", &len, &offset, &line_len, &line_blen); | ~^ ~~~~ | | | | int* uint* {aka unsigned int*} | %d libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GArgs.cpp -o libgclib_la-GArgs.o >/dev/null 2>&1 In file included from gff.cpp:1: gff.h:229:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 229 | struct { | ^ gff.h:232:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 232 | struct { | ^ gff.h:328:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 328 | struct { | ^ gff.h:691:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 691 | struct { | ^ gff.h:1150:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1150 | struct { | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gcdb.cpp -o libgclib_la-gcdb.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gdna.cpp -o libgclib_la-gdna.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GFastaIndex.cpp -o libgclib_la-GFastaIndex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-gstopwatch.lo `test -f 'gstopwatch.cpp' || echo './'`gstopwatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GCdbYank.cpp -o libgclib_la-GCdbYank.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gsocket.cpp -o libgclib_la-gsocket.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GFaSeqGet.cpp -o libgclib_la-GFaSeqGet.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GBase.cpp -o libgclib_la-GBase.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GAlnExtend.cpp -o libgclib_la-GAlnExtend.o >/dev/null 2>&1 In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GMapSeg]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GMapSeg]’ gff.h:127:50: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GMapSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.cpp:1: gff.h:70:7: note: ‘class GMapSeg’ declared here 70 | class GMapSeg:public GSeg { | ^~~~~~~ In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSeg]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSeg]’ gff.h:311:92: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.h:6, from gff.cpp:1: GBase.h:308:7: note: ‘class GSeg’ declared here 308 | class GSeg { | ^~~~ In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GeneCDS]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GeneCDS]’ gff.h:1351:31: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GeneCDS’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.cpp:1: gff.h:1340:7: note: ‘class GeneCDS’ declared here 1340 | class GeneCDS: public GSeg { | ^~~~~~~ In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GffExon]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GffExon]’ gff.cpp:2315:16: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GffExon’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.cpp:1: gff.h:629:7: note: ‘class GffExon’ declared here 629 | class GffExon : public GSeg { | ^~~~~~~ In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSegMatch]’: GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSegMatch]’ GList.hh:191:76: required from ‘GArray::GArray(int (*)(pointer, pointer)) [with OBJ = GSegMatch; GCompareProc = int(void*, void*); pointer = void*]’ gff.h:1351:31: required from here GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.cpp:1: gff.h:1328:7: note: ‘class GSegMatch’ declared here 1328 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ In file included from GList.hh:8, from GFastaIndex.h:12, from GFaSeqGet.h:3, from gff.h:9, from gff.cpp:1: GVec.hh: In instantiation of ‘void GVec::Grow(int, OBJ&) [with OBJ = GSegMatch]’: GVec.hh:437:9: required from ‘void GVec::Insert(int, OBJ*) [with OBJ = GSegMatch]’ GVec.hh:69:44: required from ‘void GVec::Insert(int, OBJ) [with OBJ = GSegMatch]’ GList.hh:234:21: required from ‘int GArray::Add(OBJ*) [with OBJ = GSegMatch]’ GList.hh:51:36: required from ‘int GArray::Add(OBJ&) [with OBJ = GSegMatch]’ gff.h:1364:22: required from here GVec.hh:358:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gff.cpp:1: gff.h:1328:7: note: ‘class GSegMatch’ declared here 1328 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GStr.lo `test -f 'GStr.cpp' || echo './'`GStr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gstopwatch.cpp -fPIC -DPIC -o .libs/libgclib_la-gstopwatch.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c -o libgclib_la-GThreads.lo `test -f 'GThreads.cpp' || echo './'`GThreads.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GapAssem.cpp -o libgclib_la-GapAssem.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GStr.cpp -fPIC -DPIC -o .libs/libgclib_la-GStr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gstopwatch.cpp -o libgclib_la-gstopwatch.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GThreads.cpp -fPIC -DPIC -o .libs/libgclib_la-GThreads.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GThreads.cpp -o libgclib_la-GThreads.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c GStr.cpp -o libgclib_la-GStr.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -c gff.cpp -o libgclib_la-gff.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -version-info 2:0 -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-flto -o libgclib.la -rpath /usr/lib/x86_64-linux-gnu libgclib_la-codons.lo libgclib_la-GAlnExtend.lo libgclib_la-GapAssem.lo libgclib_la-GArgs.lo libgclib_la-GBase.lo libgclib_la-gcdb.lo libgclib_la-GCdbYank.lo libgclib_la-gdna.lo libgclib_la-GFaSeqGet.lo libgclib_la-GFastaIndex.lo libgclib_la-gff.lo libgclib_la-gsocket.lo libgclib_la-gstopwatch.lo libgclib_la-GStr.lo libgclib_la-GThreads.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/libgclib_la-codons.o .libs/libgclib_la-GAlnExtend.o .libs/libgclib_la-GapAssem.o .libs/libgclib_la-GArgs.o .libs/libgclib_la-GBase.o .libs/libgclib_la-gcdb.o .libs/libgclib_la-GCdbYank.o .libs/libgclib_la-gdna.o .libs/libgclib_la-GFaSeqGet.o .libs/libgclib_la-GFastaIndex.o .libs/libgclib_la-gff.o .libs/libgclib_la-gsocket.o .libs/libgclib_la-gstopwatch.o .libs/libgclib_la-GStr.o .libs/libgclib_la-GThreads.o -lpthread -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -flto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-flto -Wl,-soname -Wl,libgclib.so.2 -o .libs/libgclib.so.2.0.0 GVec.hh: In member function 'setCapacity': GVec.hh:295:10: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 295 | fArray=new OBJ[NewCapacity]; | ^ GVec.hh:295:10: note: in a call to built-in allocation function 'operator new []' libtool: link: (cd ".libs" && rm -f "libgclib.so.2" && ln -s "libgclib.so.2.0.0" "libgclib.so.2") libtool: link: (cd ".libs" && rm -f "libgclib.so" && ln -s "libgclib.so.2.0.0" "libgclib.so") libtool: link: ar cr .libs/libgclib.a libgclib_la-codons.o libgclib_la-GAlnExtend.o libgclib_la-GapAssem.o libgclib_la-GArgs.o libgclib_la-GBase.o libgclib_la-gcdb.o libgclib_la-GCdbYank.o libgclib_la-gdna.o libgclib_la-GFaSeqGet.o libgclib_la-GFastaIndex.o libgclib_la-gff.o libgclib_la-gsocket.o libgclib_la-gstopwatch.o libgclib_la-GStr.o libgclib_la-GThreads.o libtool: link: ranlib .libs/libgclib.a libtool: link: ( cd ".libs" && rm -f "libgclib.la" && ln -s "../libgclib.la" "libgclib.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-flto -o mdtest mdtest.o libgclib.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/libgclib-0.11.10+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -D_FILE_OFFSET_BITS=64 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-flto -o .libs/mdtest mdtest.o ./.libs/libgclib.so make[2]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' ./mdtest 7TEST^BCT 7 matching bases base mismatch [T] base mismatch [E] base mismatch [S] base mismatch [T] 3 base(s) deletion [BCT] make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgclib-0.11.10\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' make[2]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' /bin/mkdir -p '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libgclib.la '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libgclib.so.2.0.0 /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.so.2.0.0 libtool: install: (cd /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libgclib.so.2.0.0 libgclib.so.2 || { rm -f libgclib.so.2 && ln -s libgclib.so.2.0.0 libgclib.so.2; }; }) libtool: install: (cd /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libgclib.so.2.0.0 libgclib.so || { rm -f libgclib.so && ln -s libgclib.so.2.0.0 libgclib.so; }; }) libtool: install: /usr/bin/install -c .libs/libgclib.lai /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.la libtool: install: /usr/bin/install -c .libs/libgclib.a /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.a libtool: install: chmod 644 /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.a libtool: install: ranlib /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c mdtest '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/bin' libtool: warning: 'libgclib.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mdtest /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/bin/mdtest /bin/mkdir -p '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/include' /usr/bin/install -c -m 644 GAlnExtend.h GArgs.h GBam.h GBase.h GBitVec.h GCdbYank.h GFaSeqGet.h GFastaFile.h GFastaIndex.h GResUsage.h GStr.h GThreads.h GapAssem.h codons.h config.h gcdb.h gdimg.h gdna.h gff.h gsocket.h gstopwatch.h proc_mem.h GHash.hh GIntHash.hh GList.hh GVec.hh '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/include' /bin/mkdir -p '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libgclib.pc '/build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgclib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgclib2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.a debian/libgclib-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.so debian/libgclib-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.so.2 debian/libgclib2/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgclib-0.11.10+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgclib.so.2.0.0 debian/libgclib2/usr/lib/x86_64-linux-gnu PKGDEV=libgclib-dev PKGSHL=libgclib2 install -d -m 755 debian/libgclib-dev/usr mv debian/tmp/usr/include debian/libgclib-dev/usr install -d -m 755 debian/libgclib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgclib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mkdir debian/libgclib-dev/usr/include/gclib mv debian/libgclib-dev/usr/include/*.h* debian/libgclib-dev/usr/include/gclib sed -i '/PACKAGE_NAME/d' debian/libgclib-dev/usr/include/gclib/config.h # delete header files of not compiled C++ source files find debian/libgclib-dev -name gdimg.h -delete find debian/libgclib-dev -name GBam.h -delete make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libgclib-0.11.10+ds' dh_installexamples chmod a-x debian/libgclib-dev/usr/share/doc/libgclib-dev/examples/* make[1]: Leaving directory '/build/reproducible-path/libgclib-0.11.10+ds' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgclib2-dbgsym' in '../libgclib2-dbgsym_0.11.10+ds-2_amd64.deb'. dpkg-deb: building package 'libgclib-dev' in '../libgclib-dev_0.11.10+ds-2_amd64.deb'. dpkg-deb: building package 'libgclib2' in '../libgclib2_0.11.10+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libgclib_0.11.10+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1217533 and its subdirectories I: Current time: Thu Jul 18 08:17:02 -12 2024 I: pbuilder-time-stamp: 1721333822 Thu Jul 18 20:17:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Thu Jul 18 20:17:04 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Thu Jul 18 20:18:07 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Thu Jul 18 20:18:07 UTC 2024 I: libgclib_0.11.10+ds-2_amd64.changes: Format: 1.8 Date: Fri, 18 Sep 2020 11:07:12 +0200 Source: libgclib Binary: libgclib-dev libgclib2 libgclib2-dbgsym Architecture: amd64 Version: 0.11.10+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libgclib-dev - header files for Genome Code Lib (GCLib) libgclib2 - C++ library to handle biological short sequence data Closes: 968886 Changes: libgclib (0.11.10+ds-2) unstable; urgency=medium . * Provide symbols only for amd64 Closes: #968886 Checksums-Sha1: 8750f74937207a3a6f1041941e987ec2a3418dbb 80948 libgclib-dev_0.11.10+ds-2_amd64.deb ba9b9217d58b36738532401d20d5a09382543a9e 520920 libgclib2-dbgsym_0.11.10+ds-2_amd64.deb d1fe4a01471f35baa7bf038d757ab5c7952beece 145292 libgclib2_0.11.10+ds-2_amd64.deb 4f90bdbe4dbbe012df8b6e07af239386c357a2a5 6100 libgclib_0.11.10+ds-2_amd64.buildinfo Checksums-Sha256: e74c93840360889ac9992818ef948a858f5640958b58c33d0d8fd9fd61d1aeac 80948 libgclib-dev_0.11.10+ds-2_amd64.deb 69fc813c582ea0408adf7fd8d883d7cc097c3ae48c6532fc4f56d029745a9f2f 520920 libgclib2-dbgsym_0.11.10+ds-2_amd64.deb 185d73b12e3c4e819a48dc764b07a9b738d7b64241cb277c6cc2e9b3f7b82410 145292 libgclib2_0.11.10+ds-2_amd64.deb 8bad51802811d23b72e62bec6faa283e0b64eaa58406d1ba53bc2f41d8b4e871 6100 libgclib_0.11.10+ds-2_amd64.buildinfo Files: 313a03abe246d42fd0dd5f4e4a50cf5d 80948 libdevel optional libgclib-dev_0.11.10+ds-2_amd64.deb 29528345c4b587f755e6787c6431fc1e 520920 debug optional libgclib2-dbgsym_0.11.10+ds-2_amd64.deb cce602de16878e9846d47d9a07e1d25f 145292 libs optional libgclib2_0.11.10+ds-2_amd64.deb 8be5202dc7ee2c081a4a4803557c31d4 6100 science optional libgclib_0.11.10+ds-2_amd64.buildinfo Thu Jul 18 20:18:08 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_37-20470.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2avAgk2N/libgclib_0.11.10+ds-2.diffoscope.html --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2avAgk2N/b1/libgclib_0.11.10+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2avAgk2N/b2/libgclib_0.11.10+ds-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.307s) 0.307s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 622ms CPU time consumed: 626ms Thu Jul 18 20:18:09 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 18 20:18:09 UTC 2024 I: libgclib from bullseye built successfully and reproducibly on amd64. Thu Jul 18 20:18:10 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jul 18 20:18:10 UTC 2024 I: Submitting 8.0K b1/libgclib_0.11.10+ds-2_amd64.buildinfo.asc Thu Jul 18 20:18:11 UTC 2024 I: Submitting 8.0K b2/libgclib_0.11.10+ds-2_amd64.buildinfo.asc Thu Jul 18 20:18:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 18 20:18:12 UTC 2024 I: Done submitting .buildinfo files. Thu Jul 18 20:18:12 UTC 2024 I: Removing signed libgclib_0.11.10+ds-2_amd64.buildinfo.asc files: removed './b1/libgclib_0.11.10+ds-2_amd64.buildinfo.asc' removed './b2/libgclib_0.11.10+ds-2_amd64.buildinfo.asc'