Tue Jan 11 16:10:09 UTC 2022 I: starting to build transrate-tools/bullseye/amd64 on jenkins on '2022-01-11 16:10' Tue Jan 11 16:10:09 UTC 2022 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/36693/console.log Tue Jan 11 16:10:09 UTC 2022 I: Downloading source for bullseye/transrate-tools=1.0.0-3 --2022-01-11 16:10:10-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/transrate-tools/transrate-tools_1.0.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2110 (2.1K) Saving to: ‘transrate-tools_1.0.0-3.dsc’ 0K .. 100% 24.2M=0s 2022-01-11 16:10:10 (24.2 MB/s) - ‘transrate-tools_1.0.0-3.dsc’ saved [2110/2110] Tue Jan 11 16:10:10 UTC 2022 I: transrate-tools_1.0.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: transrate-tools Binary: transrate-tools Architecture: any Version: 1.0.0-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://hibberdlab.com/transrate/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/transrate-tools Vcs-Git: https://salsa.debian.org/med-team/transrate-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), cmake, libbamtools-dev (>= 2.4+dfsg-1~), zlib1g-dev, help2man Package-List: transrate-tools deb science optional arch=any Checksums-Sha1: 84309a45a9770a22e4ef41a2930f9fb815c0b9fb 6167 transrate-tools_1.0.0.orig.tar.gz 5370d54475f9fdc61258de2059f3ab146b5414de 264904 transrate-tools_1.0.0-3.debian.tar.xz Checksums-Sha256: cdaac24be4f9ad9caf36834e2bc464758afcb5e746c6e9851255c7ac92fad898 6167 transrate-tools_1.0.0.orig.tar.gz f4d06fe650f62db30ae744968ff09729e755c80e5a2cccc37fd1538ba385770e 264904 transrate-tools_1.0.0-3.debian.tar.xz Files: 76344f9a81b1fb7b9387306c5d6f0c63 6167 transrate-tools_1.0.0.orig.tar.gz 5c235dce31096517e7f8ec3d5d46edd8 264904 transrate-tools_1.0.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7LfL8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Mw//XRc8lvsU0ub9T1Q8IG40OuRRI+Y9eoWp 85z0QfzaqudZQ8yz1oz1CLqo/O4W4HBkPAM5L60OuzpiKRW3wk7W2bbUKSv83k5U ySX41Yv36iFokqBCP9sXawWtKaKXYIE6S658+Mn3K6iVvTLUb+zlv+fs1w2nl2Cg H5qjlFdFEGGYKLghZeRdm7wrj5HkNSSMtvGZnZnLYakLHnrJxHHfKiRiZ5Ugrgia WoVzLix2LvYMVbTANOYecfXKB/7mXtnTS4M/7p2YbEB2yM/9TKDN7vubVAdmfWPR sfVACMXB+/AZSqGjS241EgfQteA1AbWBagAden488UnKXOHozs93A9IfcxU0Cq5r fC7xj37ggZL9mRetCjb10KCiNEAwfu4YbNQNd5Z3ibV2Y0k2O1wljlmg1FqctfnO LRnxmrsK4KSix5jyEMYzM0PPmMNlC8QVTippkC9HIdB58VhA60OU5NMlYY+yXX2j wisYIUyr+qdh4U0gmu0Eo0UD3pwhV0gsYgSnjd/8+AJH25v8rBkmefR7jIcTWp3t M41RE922m8QNfpM2KhR4G7DVf5z/kG69RY8Kr6Puj/hbbOorLtEMf4JkWiG82/55 bE2Kih9fRp4dx9zqsAe3jmN8UXY1hK2QIk+fWsJtIAmd4Y5yLrRTzuxRlSbvo0GO TxMSQPRFaJg= =TVlO -----END PGP SIGNATURE----- Tue Jan 11 16:10:10 UTC 2022 I: Checking whether the package is not for us Tue Jan 11 16:10:10 UTC 2022 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Jan 11 16:10:10 UTC 2022 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Jan 11 16:10:35 UTC 2022 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 13 10:33:11 -12 2023 I: pbuilder-time-stamp: 1676327591 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [transrate-tools_1.0.0-3.dsc] I: copying [./transrate-tools_1.0.0.orig.tar.gz] I: copying [./transrate-tools_1.0.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.QU1r0INj/trustedkeys.kbx': General error gpgv: Signature made Sun May 24 20:07:27 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./transrate-tools_1.0.0-3.dsc dpkg-source: info: extracting transrate-tools in transrate-tools-1.0.0 dpkg-source: info: unpacking transrate-tools_1.0.0.orig.tar.gz dpkg-source: info: unpacking transrate-tools_1.0.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake-bamtools I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1005594/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6b909e1c3d8640109c8ac907038646c7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1005594' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/pbuilderrc_Csk1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/b1 --logfile b1/build.log transrate-tools_1.0.0-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 9 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/1005594/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), cmake, libbamtools-dev (>= 2.4+dfsg-1~), zlib1g-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev (>= 2.4+dfsg-1~); however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbamtools-dev{a} libbamtools2.5.1{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 29.2 MB of archives. After unpacking 111 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 help2man amd64 1.48.1 [190 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libbamtools-dev amd64 2.5.1+dfsg-9 [208 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Fetched 29.2 MB in 0s (77.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/transrate-tools-1.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../transrate-tools_1.0.0-3_source.changes dpkg-buildpackage: info: source package transrate-tools dpkg-buildpackage: info: source version 1.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pranav Ballaney dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found bamtools: /usr/lib/x86_64-linux-gnu/libbamtools.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/transrate-tools-1.0.0 -B/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/CMakeFiles /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bam-read.dir/build.make src/CMakeFiles/bam-read.dir/depend make[3]: Entering directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' cd /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/transrate-tools-1.0.0 /build/transrate-tools-1.0.0/src /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src/CMakeFiles/bam-read.dir/DependInfo.cmake --color= Dependee "/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src/CMakeFiles/bam-read.dir/DependInfo.cmake" is newer than depender "/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src/CMakeFiles/bam-read.dir/depend.internal". Dependee "/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src/CMakeFiles/bam-read.dir/depend.internal". Scanning dependencies of target bam-read make[3]: Leaving directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bam-read.dir/build.make src/CMakeFiles/bam-read.dir/build make[3]: Entering directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/bam-read.dir/bam-read.cpp.o [ 50%] Building CXX object src/CMakeFiles/bam-read.dir/pileup.cpp.o [ 75%] Building CXX object src/CMakeFiles/bam-read.dir/segmenter.cpp.o cd /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -o CMakeFiles/bam-read.dir/bam-read.cpp.o -c /build/transrate-tools-1.0.0/src/bam-read.cpp cd /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -o CMakeFiles/bam-read.dir/pileup.cpp.o -c /build/transrate-tools-1.0.0/src/pileup.cpp cd /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -o CMakeFiles/bam-read.dir/segmenter.cpp.o -c /build/transrate-tools-1.0.0/src/segmenter.cpp /build/transrate-tools-1.0.0/src/segmenter.cpp: In member function 'void Segmenter::load_states()': /build/transrate-tools-1.0.0/src/segmenter.cpp:26:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 26 | for (int i = 0 ; i < seq.size() ; ++i) { | ~~^~~~~~~~~~~~ [100%] Linking CXX executable bam-read cd /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-read.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bam-read.dir/bam-read.cpp.o CMakeFiles/bam-read.dir/pileup.cpp.o CMakeFiles/bam-read.dir/segmenter.cpp.o -o bam-read -lbamtools make[3]: Leaving directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' [100%] Built target bam-read make[2]: Leaving directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 make[1]: Entering directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j16 Test project /build/transrate-tools-1.0.0/obj-x86_64-linux-gnu No tests were found!!! make[1]: Leaving directory '/build/transrate-tools-1.0.0/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/transrate-tools-1.0.0' dh_auto_install help2man --no-info --include debian/bam-read-man-include \ obj*/src/bam-read > debian/bam-read.1 make[1]: Leaving directory '/build/transrate-tools-1.0.0' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dwz: debian/transrate-tools/usr/bin/bam-read: .debug_info section not present dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'transrate-tools' in '../transrate-tools_1.0.0-3_amd64.deb'. dpkg-deb: building package 'transrate-tools-dbgsym' in '../transrate-tools-dbgsym_1.0.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../transrate-tools_1.0.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1005594 and its subdirectories I: Current time: Mon Feb 13 10:33:35 -12 2023 I: pbuilder-time-stamp: 1676327615 Tue Jan 11 16:10:35 UTC 2022 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Jan 11 16:10:35 UTC 2022 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Jan 11 16:12:02 UTC 2022 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Jan 11 16:12:02 UTC 2022 I: transrate-tools_1.0.0-3_amd64.changes: Format: 1.8 Date: Mon, 25 May 2020 09:45:14 +0200 Source: transrate-tools Binary: transrate-tools transrate-tools-dbgsym Architecture: amd64 Version: 1.0.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pranav Ballaney Description: transrate-tools - helper for transrate Changes: transrate-tools (1.0.0-3) unstable; urgency=medium . * Team upload. . [ Steffen Moeller ] * d/u/metadata: yamllint * Update metadata with ref to conda . [ Pranav Ballaney ] * Add test data * Add autopkgtests * Install docs . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Secure URI in copyright format (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Repository, Repository-Browse. Checksums-Sha1: 5c130a0a2274e2341f8c208d351c3785d87316dc 4116 transrate-tools-dbgsym_1.0.0-3_amd64.deb 02b2d775984bcdeda891323f95504e20c6ff3d70 6035 transrate-tools_1.0.0-3_amd64.buildinfo 1f3247e4118f177fddcfd970a7567d9430260dc1 277964 transrate-tools_1.0.0-3_amd64.deb Checksums-Sha256: 1c55ea6d1c0ec9807fbe523917e1f07836e2f2dcffe0c63632869760da1304d9 4116 transrate-tools-dbgsym_1.0.0-3_amd64.deb b9ddcd04ba4d53ae3e7f033d1517465c2fe8480fd2c57d0a564ba5755f7e960d 6035 transrate-tools_1.0.0-3_amd64.buildinfo 7894b3671b1a012e4bc89bc8067ed017a1a35d2b105a665b41f55bbb5202256e 277964 transrate-tools_1.0.0-3_amd64.deb Files: 512433ecf3e42faf6e57fa2766dacaa7 4116 debug optional transrate-tools-dbgsym_1.0.0-3_amd64.deb 547bd11a88b0fea8a965bf5ef7ec0a22 6035 science optional transrate-tools_1.0.0-3_amd64.buildinfo efa57300ea531a2cc91d6d2c8a972de6 277964 science optional transrate-tools_1.0.0-3_amd64.deb Tue Jan 11 16:12:04 UTC 2022 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/transrate-tools_1.0.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/transrate-tools_1.0.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/transrate-tools_1.0.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/b1/transrate-tools_1.0.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.iP8aEIz2aX/b2/transrate-tools_1.0.0-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.291s) 0.291s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Jan 11 16:12:05 UTC 2022 I: found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 11 16:12:05 UTC 2022 I: transrate-tools from bullseye built successfully and reproducibly on amd64. Tue Jan 11 16:12:06 UTC 2022 I: Submitting .buildinfo files to external archives: Tue Jan 11 16:12:06 UTC 2022 I: Submitting 8.0K b1/transrate-tools_1.0.0-3_amd64.buildinfo.asc Tue Jan 11 16:12:07 UTC 2022 I: Submitting 8.0K b2/transrate-tools_1.0.0-3_amd64.buildinfo.asc Tue Jan 11 16:12:08 UTC 2022 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 11 16:12:08 UTC 2022 I: Done submitting .buildinfo files. Tue Jan 11 16:12:08 UTC 2022 I: Removing signed transrate-tools_1.0.0-3_amd64.buildinfo.asc files: removed './b1/transrate-tools_1.0.0-3_amd64.buildinfo.asc' removed './b2/transrate-tools_1.0.0-3_amd64.buildinfo.asc'