Fri Jul 16 20:34:29 UTC 2021 I: starting to build cbflib/bullseye/arm64 on jenkins on '2021-07-16 20:34' Fri Jul 16 20:34:29 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_27/19623/console.log Fri Jul 16 20:34:29 UTC 2021 I: Downloading source for bullseye/cbflib=0.9.6+dfsg1-2 --2021-07-16 20:34:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cbflib/cbflib_0.9.6+dfsg1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2386 (2.3K) Saving to: ‘cbflib_0.9.6+dfsg1-2.dsc’ 0K .. 100% 181M=0s 2021-07-16 20:34:29 (181 MB/s) - ‘cbflib_0.9.6+dfsg1-2.dsc’ saved [2386/2386] Fri Jul 16 20:34:29 UTC 2021 I: cbflib_0.9.6+dfsg1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cbflib Binary: libcbf-dev, libcbf1, cbflib-bin, python3-pycbf, python3-pycbf-dbg, cbflib-doc Architecture: any all Version: 0.9.6+dfsg1-2 Maintainer: Debian Science Maintainers Uploaders: Morten Kjeldgaard , Teemu Ikonen Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/science-team/cbflib Vcs-Git: https://salsa.debian.org/science-team/cbflib.git Build-Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev Package-List: cbflib-bin deb science optional arch=any cbflib-doc deb doc optional arch=all libcbf-dev deb libdevel optional arch=any libcbf1 deb libs optional arch=any python3-pycbf deb python optional arch=any python3-pycbf-dbg deb debug optional arch=any Checksums-Sha1: 7ea0e090bf29ab9795167796e2466491481ce61a 5498744 cbflib_0.9.6+dfsg1.orig.tar.xz 89265ba2bcbb8a47becb5fa2bb00650dadd9cf7a 24876 cbflib_0.9.6+dfsg1-2.debian.tar.xz Checksums-Sha256: 1686b32cca010717c2c4f980f536c672460b5de583c1828fa19b388738d25d42 5498744 cbflib_0.9.6+dfsg1.orig.tar.xz cfdeed14e5832c0ad313636a5956b5b514dd5c9e53b5e27759fb35f0bbb95864 24876 cbflib_0.9.6+dfsg1-2.debian.tar.xz Files: eda0eb5b995a3ea95e64c9bfd7612c25 5498744 cbflib_0.9.6+dfsg1.orig.tar.xz 65fd0dc90597e08b191999c564d636b0 24876 cbflib_0.9.6+dfsg1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE2bRTt5m4gw2UXmoKW/VOXhK5ALsFAl6d6MQRHHBpY2NhQGRl Ymlhbi5vcmcACgkQW/VOXhK5ALuuYg//c9wB/DHqjcj7VUP76her2+q7vTGMln0i 2A4P4wrRAbnrlbzbcvi84Lh2bkSwBCDZ/QDiNMJyg2+bKFRPaA/ArVkTBCiyqsEz 9UTCz68QdBkTiKiz2ARKjLqMyELPlwr1hOqmPjC+lwo/LqI6OlV0p22R5Jfsp+Bx YCw5sOlIjQD4ogqk2cmU00LoINEK1LWg4jE5CO1TQFSfbJK0MJpNy5sK3tp+INS3 qygDtEcETHcsiGzKrxMHqSLLM6mu/ImrBgcYmkih+eFIb4FwBeRnEXV6a3iTeNoZ tbJIhA0L9W4BUVzDNdlCQuBTmT8pA64bo/B+nKh6beS6Ggx8WEOv+KSl60SLMc2c d23ltFs2S0xjbJFbdJ6IB15l4M/zE5UFUwa4lfEg1IlgjXgqeAso78wjDrMIFGr7 mcrbkhLrvnCpUk6GAZJYYySLjSiOj2mtkiWR58hF+S8E7qxMisdHdIjaGnJIiUWt s0W3uhrdt9YA1319CH2KMkznFEog3EaSCOzDj7Fejpjc+bByVy1+4UVS0JDiEMBj WWpEo5OB71J/3wU8wVMF20KWReHQVyOrPOoMCVvOOJwPdEijY4QkgR8o2rFqxIbf DQe1n/+DQ5kDRVDeA5XwegoRAYa5v11qOPVKCLrA9eeHBVwN/Sb8X2oge36nr3OM PdOdb3BVR5I= =AhkU -----END PGP SIGNATURE----- Fri Jul 16 20:34:29 UTC 2021 I: Checking whether the package is not for us Fri Jul 16 20:34:30 UTC 2021 I: Starting 1st build on remote node codethink15-arm64.debian.net. Fri Jul 16 20:34:30 UTC 2021 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Fri Jul 16 20:41:18 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 18 14:57:33 -12 2022 I: pbuilder-time-stamp: 1660877853 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cbflib_0.9.6+dfsg1-2.dsc] I: copying [./cbflib_0.9.6+dfsg1.orig.tar.xz] I: copying [./cbflib_0.9.6+dfsg1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.El1DoAaK/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 20 06:24:04 2020 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cbflib_0.9.6+dfsg1-2.dsc dpkg-source: info: extracting cbflib in cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23637/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23637' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/pbuilderrc_tWXk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/b1 --logfile b1/build.log cbflib_0.9.6+dfsg1-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 18 03:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/23637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dbg; however: Package python3-all-dbg is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dbg{a} libpython3-all-dev{a} libpython3-dbg{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dbg{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} po-debconf{a} python3{a} python3-all{a} python3-all-dbg{a} python3-all-dev{a} python3-dbg{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dbg{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 71.1 MB of archives. After unpacking 271 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 hdf5-helpers arm64 1.10.6+repack-4 [40.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libsz2 arm64 1.0.4-1 [6736 B] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libaec-dev arm64 1.0.4-1 [18.2 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libhdf5-103-1 arm64 1.10.6+repack-4 [1032 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libhdf5-cpp-103-1 arm64 1.10.6+repack-4 [131 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libhdf5-fortran-102 arm64 1.10.6+repack-4 [103 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-100 arm64 1.10.6+repack-4 [78.6 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-fortran-100 arm64 1.10.6+repack-4 [55.0 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-cpp-100 arm64 1.10.6+repack-4 [37.6 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo-dev arm64 1:2.0.6-4 [255 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libjpeg-dev arm64 1:2.0.6-4 [67.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libhdf5-dev arm64 1.10.6+repack-4 [2535 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dbg arm64 3.9.2-1 [14.6 MB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libpython3-dbg arm64 3.9.2-3 [21.6 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dbg arm64 3.9.2-3 [1064 B] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 75 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 77 http://deb.debian.org/debian bullseye/main arm64 python3.9-dbg arm64 3.9.2-1 [19.8 MB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 python3-dbg arm64 3.9.2-3 [1224 B] Get: 79 http://deb.debian.org/debian bullseye/main arm64 python3-all-dbg arm64 3.9.2-3 [1064 B] Get: 80 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Fetched 71.1 MB in 6s (12.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:arm64. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20934 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. 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Selecting previously unselected package libicu67:arm64. Preparing to unpack .../21-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../30-hdf5-helpers_1.10.6+repack-4_arm64.deb ... Unpacking hdf5-helpers (1.10.6+repack-4) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../31-libaec0_1.0.4-1_arm64.deb ... Unpacking libaec0:arm64 (1.0.4-1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../32-libsz2_1.0.4-1_arm64.deb ... Unpacking libsz2:arm64 (1.0.4-1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../33-libaec-dev_1.0.4-1_arm64.deb ... Unpacking libaec-dev:arm64 (1.0.4-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../34-libexpat1-dev_2.2.10-2_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.2.10-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../35-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../36-libglib2.0-0_2.66.8-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.66.8-1) ... Selecting previously unselected package libhdf5-103-1:arm64. Preparing to unpack .../37-libhdf5-103-1_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-103-1:arm64 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-cpp-103-1:arm64. Preparing to unpack .../38-libhdf5-cpp-103-1_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-cpp-103-1:arm64 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-fortran-102:arm64. Preparing to unpack .../39-libhdf5-fortran-102_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-fortran-102:arm64 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-100:arm64. Preparing to unpack .../40-libhdf5-hl-100_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-hl-100:arm64 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-fortran-100:arm64. Preparing to unpack .../41-libhdf5-hl-fortran-100_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-hl-fortran-100:arm64 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-cpp-100:arm64. Preparing to unpack .../42-libhdf5-hl-cpp-100_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-hl-cpp-100:arm64 (1.10.6+repack-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../43-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../44-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../45-libjpeg62-turbo-dev_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.0.6-4) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../46-libjpeg-dev_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg-dev:arm64 (1:2.0.6-4) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../47-libhdf5-dev_1.10.6+repack-4_arm64.deb ... Unpacking libhdf5-dev (1.10.6+repack-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../48-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../49-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../50-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package libpython3.9-dbg:arm64. Preparing to unpack .../51-libpython3.9-dbg_3.9.2-1_arm64.deb ... Unpacking libpython3.9-dbg:arm64 (3.9.2-1) ... Selecting previously unselected package libpython3-dbg:arm64. Preparing to unpack .../52-libpython3-dbg_3.9.2-3_arm64.deb ... Unpacking libpython3-dbg:arm64 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dbg:arm64. Preparing to unpack .../53-libpython3-all-dbg_3.9.2-3_arm64.deb ... Unpacking libpython3-all-dbg:arm64 (3.9.2-3) ... Selecting previously unselected package libpython3.9:arm64. Preparing to unpack .../54-libpython3.9_3.9.2-1_arm64.deb ... Unpacking libpython3.9:arm64 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:arm64. Preparing to unpack .../55-libpython3.9-dev_3.9.2-1_arm64.deb ... Unpacking libpython3.9-dev:arm64 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../56-libpython3-dev_3.9.2-3_arm64.deb ... Unpacking libpython3-dev:arm64 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../57-libpython3-all-dev_3.9.2-3_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.9.2-3) ... Selecting previously unselected package pkg-config. Preparing to unpack .../58-pkg-config_0.29.2-1_arm64.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../59-python3-all_3.9.2-3_arm64.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3.9-dbg. Preparing to unpack .../60-python3.9-dbg_3.9.2-1_arm64.deb ... Unpacking python3.9-dbg (3.9.2-1) ... Selecting previously unselected package python3-dbg. Preparing to unpack .../61-python3-dbg_3.9.2-3_arm64.deb ... Unpacking python3-dbg (3.9.2-3) ... Selecting previously unselected package python3-all-dbg. Preparing to unpack .../62-python3-all-dbg_3.9.2-3_arm64.deb ... Unpacking python3-all-dbg (3.9.2-3) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../63-python3.9-dev_3.9.2-1_arm64.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../64-python3-dev_3.9.2-3_arm64.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../65-python3-all-dev_3.9.2-3_arm64.deb ... Unpacking python3-all-dev (3.9.2-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-4) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libaec0:arm64 (1.0.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:arm64 (2.2.10-2) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.0.6-4) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libsz2:arm64 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up libjpeg-dev:arm64 (1:2.0.6-4) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:arm64 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.6+repack-4) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up libhdf5-hl-100:arm64 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.9-dbg:arm64 (3.9.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3-dbg:arm64 (3.9.2-3) ... Setting up libpython3-all-dbg:arm64 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.6+repack-4) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up libhdf5-fortran-102:arm64 (1.10.6+repack-4) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.6+repack-4) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dbg (3.9.2-1) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-dbg (3.9.2-3) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-all (3.9.2-3) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-all-dbg (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/cbflib-0.9.6+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cbflib_0.9.6+dfsg1-2_source.changes dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:232: python3.9-dbg setup.py clean running clean removing '/build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --with python3 --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py config running config I: pybuild base:232: python3.9-dbg setup.py config running config make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /build/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c /build/cbflib-0.9.6+dfsg1/src/cbf.c: In function 'cbf_convert_dictionary_definition': /build/cbflib-0.9.6+dfsg1/src/cbf.c:5474:22: warning: 'itemname' may be used uninitialized in this function [-Wmaybe-uninitialized] 5474 | cbf_failnez( cbf_set_hashedvalue (cbfdictionary, itemname, "name", -1)) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfcat_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function 'cbf_read_h5file_group'; did you mean 'cbf_read_h5file'? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable 'indent' [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfdb_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable 'indent' [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable 'indent' [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable 'equipment_component' [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable 'close' [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable 'open' [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable 'type_order' set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable 'byte_order' [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable 'buffer' [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable 'atcbf' set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable 'atnexus' [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable 'errorcode' [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable 'node' [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: 'cbf_write_nx2cbf__cbfdb_op' defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: 'cbf_write_nx2cbf__cbfcat_op' defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2.isra': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: 'offset[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: 'offset[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string.part.0' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from 'cbf_set_minicbf_header' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function 'cbf_set_reference_beam_center': /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function 'cbf_lex_wrapper': /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/img.c:12: In function 'memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from 'img_free_handle' at /build/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:34:10: warning: '__builtin___memcpy_chk' writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_free_handle': /build/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by 'malloc' here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /build/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/aarch64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:10: warning: unused variable 'thickness' [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:7: warning: variable 'cbf_status' set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function 'strncpy', inlined from 'gethd.constprop' at /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function 'gethd.constprop': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of 'convertroi' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected 'char *' but argument is of type 'const char *' 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of 'cbf_free_text' from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /build/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected 'const char **' but argument is of type 'char **' 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable 'valmax' set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable 'valnew' set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable 'kjcm' [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable 'kicm' [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:28: warning: variable 'smv_bin_type' set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of 'adscimg2cbf_sub2' makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected 'size_t' {aka 'long unsigned int'} but argument is of type 'void *' 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function 'strncpy', inlined from 'gethd.constprop' at /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'gethd.constprop': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:29: warning: '; ' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 1027) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: 'smooth_data_as_int' may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/aarch64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function 'strncpy', inlined from 'gethd' at /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function 'gethd': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function 'padhd': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function 'cbfhandle2img_sub': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:57: warning: variable 'dirinc' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable 'dirend' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:35: warning: variable 'dirsta' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:28: warning: variable 'second' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:21: warning: variable 'first' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:13: warning: variable 'colrow' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /build/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2c bash: line 1: g: command not found make[2]: [Makefile:1771: /build/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /build/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfcat_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function 'cbf_read_h5file_group'; did you mean 'cbf_read_h5file'? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable 'indent' [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfdb_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable 'indent' [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable 'indent' [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable 'equipment_component' [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable 'close' [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable 'open' [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable 'type_order' set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable 'byte_order' [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable 'buffer' [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable 'atcbf' set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable 'atnexus' [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable 'errorcode' [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable 'node' [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: 'cbf_write_nx2cbf__cbfdb_op' defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: 'cbf_write_nx2cbf__cbfcat_op' defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2.isra': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string.part.0' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from 'cbf_set_minicbf_header' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function 'cbf_set_reference_beam_center': /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function 'cbf_lex_wrapper': /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /build/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function 'strncpy', inlined from 'main' at /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /build/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/convert_image.c /build/cbflib-0.9.6+dfsg1/src/img.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable 'transpose' set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/img.c:12: In function 'memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from 'img_free_handle' at /build/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:34:10: warning: '__builtin___memcpy_chk' writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_free_handle': /build/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by 'malloc' here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/cc6C97XZ.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /build/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /build/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /build/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testcell bash: line 1: g: command not found make[2]: [Makefile:1762: /build/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /build/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /build/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testreals.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testflat.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /build/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /build/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-arm64-3.9 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c ../src/cbf_simple.c -o build/temp.linux-arm64-3.9/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ../src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c pycbf_wrap.c -o build/temp.linux-arm64-3.9/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function 'cbf_handle_struct_set_image': pycbf_wrap.c:4074:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims': pycbf_wrap.c:4289:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_fs': pycbf_wrap.c:4383:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_sf': pycbf_wrap.c:4418:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_fs': pycbf_wrap.c:4460:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image': pycbf_wrap.c:4611:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_sf': pycbf_wrap.c:4634:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image': pycbf_wrap.c:4782:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims': pycbf_wrap.c:4832:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_fs': pycbf_wrap.c:4908:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_sf': pycbf_wrap.c:5004:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_sf': pycbf_wrap.c:5060:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image': pycbf_wrap.c:5091:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_sf': pycbf_wrap.c:5147:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray': pycbf_wrap.c:5223:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray': pycbf_wrap.c:5295:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_fs': pycbf_wrap.c:5380:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_fs': pycbf_wrap.c:5422:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_fs': pycbf_wrap.c:5447:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_sf': pycbf_wrap.c:5468:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: 'convert_iarray' defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: 'convert_larray' defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function 'get_error_message': pycbf_wrap.c:3510:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: '%s' directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:4980:9, inlined from '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:16981:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf': pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:4366:9, inlined from '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:12615:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf': pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'SWIG_Python_FixMethods' at pycbf_wrap.c:29493:15, inlined from 'PyInit__pycbf' at pycbf_wrap.c:29593:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/../src/cbf_simple.o build/temp.linux-arm64-3.9/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-aarch64-linux-gnu.so I: pybuild base:232: /usr/bin/python3-dbg setup.py build running build running build_py copying pycbf.py -> /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-arm64-3.9-pydebug aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9d -c ../src/cbf_simple.c -o build/temp.linux-arm64-3.9-pydebug/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ../src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -Og -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9d -c pycbf_wrap.c -o build/temp.linux-arm64-3.9-pydebug/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function 'cbf_handle_struct_set_image': pycbf_wrap.c:4074:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims': pycbf_wrap.c:4289:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_fs': pycbf_wrap.c:4383:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_sf': pycbf_wrap.c:4418:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_fs': pycbf_wrap.c:4460:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image': pycbf_wrap.c:4611:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_sf': pycbf_wrap.c:4634:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image': pycbf_wrap.c:4782:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims': pycbf_wrap.c:4832:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_fs': pycbf_wrap.c:4908:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_sf': pycbf_wrap.c:5004:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_sf': pycbf_wrap.c:5060:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image': pycbf_wrap.c:5091:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_sf': pycbf_wrap.c:5147:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray': pycbf_wrap.c:5223:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray': pycbf_wrap.c:5295:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_fs': pycbf_wrap.c:5380:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_fs': pycbf_wrap.c:5422:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_fs': pycbf_wrap.c:5447:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_sf': pycbf_wrap.c:5468:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: 'convert_iarray' defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: 'convert_larray' defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function 'get_error_message': pycbf_wrap.c:3510:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: '%s' directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:4980:9, inlined from '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:16981:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf': pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:4366:9, inlined from '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:12615:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf': pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'SWIG_Python_FixMethods' at pycbf_wrap.c:29493:15, inlined from 'PyInit__pycbf' at pycbf_wrap.c:29593:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9-pydebug/../src/cbf_simple.o build/temp.linux-arm64-3.9-pydebug/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-aarch64-linux-gnu.so make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/build/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' mkdir -p /build/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function 'strncpy', inlined from 'main' at /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/lib/libcbf.a /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a #-chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so #-cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf_old.so cp /build/cbflib-0.9.6+dfsg1/solib/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so.1 ln -s -r -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so #ln -s -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/lib_cbf.so chmod 644 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.a chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/aarch64-linux-gnu/libcbf.so # # includes # chmod -R 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /build/cbflib-0.9.6+dfsg1/include /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/convert_minicbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/makecbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/img2cif /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cif2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/nexus2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/sequence_match /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testalloc /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/arvai_test /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cif2c /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testreals /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testflat /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testflatpacked /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /build/cbflib-0.9.6+dfsg1/bin/tiff2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testhdf5 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9 creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-aarch64-linux-gnu.so -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/pycbf.py -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:232: /usr/bin/python3-dbg setup.py install --root /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg running install running build running build_py running build_ext running install_lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9 creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-aarch64-linux-gnu.so -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/pycbf.py -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_installchangelogs -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_python3 -O--no-parallel dh_installinit -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (5), cbflib-doc (230), libcbf-dev (37), libcbf1 (2), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (1), libcbf-dev (1), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installman: cbflib-bin (4), cbflib-doc (0), libcbf-dev (0), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-39-aarch64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf-dbg/usr/lib/python3/dist-packages/_pycbf.cpython-39d-aarch64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'python3-pycbf-dbgsym' in '../python3-pycbf-dbgsym_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'libcbf1-dbgsym' in '../libcbf1-dbgsym_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'cbflib-bin-dbgsym' in '../cbflib-bin-dbgsym_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.6+dfsg1-2_all.deb'. dpkg-deb: building package 'python3-pycbf-dbg' in '../python3-pycbf-dbg_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.6+dfsg1-2_arm64.deb'. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.6+dfsg1-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cbflib_0.9.6+dfsg1-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23637 and its subdirectories I: Current time: Thu Aug 18 15:04:17 -12 2022 I: pbuilder-time-stamp: 1660878257 Fri Jul 16 20:41:19 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink14-arm64.debian.net. Fri Jul 16 20:41:19 UTC 2021 I: Preparing to do remote build '2' on codethink14-arm64.debian.net. Fri Jul 16 20:49:27 UTC 2021 I: Deleting $TMPDIR on codethink14-arm64.debian.net. Fri Jul 16 20:49:28 UTC 2021 I: cbflib_0.9.6+dfsg1-2_arm64.changes: Format: 1.8 Date: Mon, 20 Apr 2020 20:16:03 +0200 Source: cbflib Binary: cbflib-bin cbflib-bin-dbgsym cbflib-doc libcbf-dev libcbf1 libcbf1-dbgsym python3-pycbf python3-pycbf-dbg python3-pycbf-dbgsym Architecture: arm64 all Version: 0.9.6+dfsg1-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Picca Frédéric-Emmanuel Description: cbflib-bin - utilities to manipulate CBF files cbflib-doc - documentation for CBFlib libcbf-dev - development files for CBFlib libcbf1 - shared library supporting CBFlib python3-pycbf - Python modules for CBFLib -- Python3 python3-pycbf-dbg - Python modules for CBFLib -- Python3 (Debug) Changes: cbflib (0.9.6+dfsg1-2) unstable; urgency=medium . * d/pathes: + 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch (Added) Checksums-Sha1: 9fa65d9d4b56dfe2b67113a126fb45bfaa7bf303 3579332 cbflib-bin-dbgsym_0.9.6+dfsg1-2_arm64.deb 7cc28e1bcf6a8781848a9069caff24088a1dd4a9 470280 cbflib-bin_0.9.6+dfsg1-2_arm64.deb 6475671c152e0dedff510123b0f1d4cf52f38751 319572 cbflib-doc_0.9.6+dfsg1-2_all.deb 7571aa904c7520aeb384c1ab5a73b013036d2816 8594 cbflib_0.9.6+dfsg1-2_arm64.buildinfo 135968eef7b633add988b1614eaf5cbef02f0bef 419636 libcbf-dev_0.9.6+dfsg1-2_arm64.deb af5da4586b13b5ab556a85aa84c10edef4043c9a 957160 libcbf1-dbgsym_0.9.6+dfsg1-2_arm64.deb b1f3a247869c52c59048af2d76ba2b601879d354 317272 libcbf1_0.9.6+dfsg1-2_arm64.deb 9aeb1fc22deecffb3bebfe4cb9a201335877ba46 149976 python3-pycbf-dbg_0.9.6+dfsg1-2_arm64.deb 2d41926066decc9c3c1d2d3eac5bbd0fb3bed4a4 453284 python3-pycbf-dbgsym_0.9.6+dfsg1-2_arm64.deb a310d31f9010e46754b4be7cf8fbb93947dc6898 163620 python3-pycbf_0.9.6+dfsg1-2_arm64.deb Checksums-Sha256: db1a7f9756c4e6a42440d90417454e714cf5a91ff26e040841859060a0f67538 3579332 cbflib-bin-dbgsym_0.9.6+dfsg1-2_arm64.deb 94e36fcbe273f1206b70a4429314e2cc2871be60cafc6333999fdba2d7878152 470280 cbflib-bin_0.9.6+dfsg1-2_arm64.deb cf7ef8864350d2641e8b790aed3bb2a02c958e68eeaefaadd6624fdcb64a297d 319572 cbflib-doc_0.9.6+dfsg1-2_all.deb 5c611cbba7c38bc40d817077dde889b3b9c6cde9c9afbacb18f2d471412e355d 8594 cbflib_0.9.6+dfsg1-2_arm64.buildinfo 83bcd947754e0ea7c2f920fda2bbdb963eeac88f0e4b77536d4831a7babce1ae 419636 libcbf-dev_0.9.6+dfsg1-2_arm64.deb 80f010e49cd19a436e493ba08d8f675e1d5464406811f6034cc4f88c56f49819 957160 libcbf1-dbgsym_0.9.6+dfsg1-2_arm64.deb a9901542bbebf71b76218a1c3f3234ea4101680ca8c0c8c72a8b7c482d1d6015 317272 libcbf1_0.9.6+dfsg1-2_arm64.deb 7dd688a26f789a3b11979e57eaa3d1a4ddad397161d927db907c154b0e3508eb 149976 python3-pycbf-dbg_0.9.6+dfsg1-2_arm64.deb 06ed8d3d311c9bef272c4127325412feea6b4e8aa59bb8e70308b5db7d486c6e 453284 python3-pycbf-dbgsym_0.9.6+dfsg1-2_arm64.deb 71781d11841da9a9156b2665d208f67148b6fc04ff7a22a2eb49b0d728185ceb 163620 python3-pycbf_0.9.6+dfsg1-2_arm64.deb Files: 8ed3938ce79ceb43816b5438601032e6 3579332 debug optional cbflib-bin-dbgsym_0.9.6+dfsg1-2_arm64.deb 42fc9dc9be0b95f1593a809652cedf96 470280 science optional cbflib-bin_0.9.6+dfsg1-2_arm64.deb 5746a3bec799096b6bc90bd83af9b838 319572 doc optional cbflib-doc_0.9.6+dfsg1-2_all.deb 8fd7bb03f295df7cc58017e11b2dd893 8594 science optional cbflib_0.9.6+dfsg1-2_arm64.buildinfo b31847c6bd5ae38e685e7c00fc0cdffd 419636 libdevel optional libcbf-dev_0.9.6+dfsg1-2_arm64.deb 40e348b652924f3dfd09175cf09b50aa 957160 debug optional libcbf1-dbgsym_0.9.6+dfsg1-2_arm64.deb d154c58fdd7f8dbcae19db8da6e20c9b 317272 libs optional libcbf1_0.9.6+dfsg1-2_arm64.deb d504a9b8dc8ba709ec3ba95516ec0e7c 149976 debug optional python3-pycbf-dbg_0.9.6+dfsg1-2_arm64.deb 4a7bfe0ccab26985b58e3bba0c4d08ab 453284 debug optional python3-pycbf-dbgsym_0.9.6+dfsg1-2_arm64.deb 47e2f2cd56e3948095309593e7fc98dc 163620 python optional python3-pycbf_0.9.6+dfsg1-2_arm64.deb Fri Jul 16 20:49:29 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/cbflib_0.9.6+dfsg1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/cbflib_0.9.6+dfsg1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/cbflib_0.9.6+dfsg1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/b1/cbflib_0.9.6+dfsg1-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.Q6whefG0Ev/b2/cbflib_0.9.6+dfsg1-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.315s) 0.315s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.083s) 0.082s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 16 20:49:31 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 16 20:49:31 UTC 2021 I: cbflib from bullseye built successfully and reproducibly on arm64. Fri Jul 16 20:49:33 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 16 20:49:33 UTC 2021 I: Submitting 12K b1/cbflib_0.9.6+dfsg1-2_arm64.buildinfo.asc Fri Jul 16 20:49:33 UTC 2021 I: Submitting 12K b2/cbflib_0.9.6+dfsg1-2_arm64.buildinfo.asc Fri Jul 16 20:49:35 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 16 20:49:35 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 16 20:49:35 UTC 2021 I: Removing signed cbflib_0.9.6+dfsg1-2_arm64.buildinfo.asc files: removed './b1/cbflib_0.9.6+dfsg1-2_arm64.buildinfo.asc' removed './b2/cbflib_0.9.6+dfsg1-2_arm64.buildinfo.asc'