Sat Jan 6 13:04:57 UTC 2024 I: starting to build centrifuge/bullseye/arm64 on jenkins on '2024-01-06 13:04' Sat Jan 6 13:04:57 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_13/18325/console.log Sat Jan 6 13:04:57 UTC 2024 I: Downloading source for bullseye/centrifuge=1.0.3-8 --2024-01-06 13:04:57-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/centrifuge/centrifuge_1.0.3-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2033 (2.0K) [text/prs.lines.tag] Saving to: ‘centrifuge_1.0.3-8.dsc’ 0K . 100% 4.47M=0s 2024-01-06 13:04:57 (4.47 MB/s) - ‘centrifuge_1.0.3-8.dsc’ saved [2033/2033] Sat Jan 6 13:04:58 UTC 2024 I: centrifuge_1.0.3-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: centrifuge Binary: centrifuge Architecture: any Version: 1.0.3-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ccb.jhu.edu/software/centrifuge/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/centrifuge Vcs-Git: https://salsa.debian.org/med-team/centrifuge.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish Package-List: centrifuge deb science optional arch=any Checksums-Sha1: c31fc38298b74f5b81f1d3704f7c4311231d6bc0 701273 centrifuge_1.0.3.orig.tar.gz 3949da2c8f50a228eafc15d1dee2983907f708e3 12412 centrifuge_1.0.3-8.debian.tar.xz Checksums-Sha256: 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343 701273 centrifuge_1.0.3.orig.tar.gz 49fd44017d67d746ca8536b6c53b7151ede7edfcbde42238bf0261086d2991e9 12412 centrifuge_1.0.3-8.debian.tar.xz Files: 4ab20730ae43f26a98b754d83213e10c 701273 centrifuge_1.0.3.orig.tar.gz 64aec03e9a602fe1346f905b4b9b9012 12412 centrifuge_1.0.3-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+pdewRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjqw//S3kJbrDgzQ3Vu7VUrXhQy0gQW41Gsah6 MvmXljTnvzlxckGMw2hM0d59eGxoISZBdusFZ28fISxOy6lTgnITPt7f8zWky3t2 SrbZmpdszTIlLce+gYGdoKdx5C596yRXBsxJoAL6cJzf8ulDlTz/AGRQQKRC8bBN HHR3mTJ5ajUFwdfolPyse+LVPtEaEPapWI1Atl7q/1GkTPWiDmBklZwF0X2Byzvj Yl+t5uLbT3ZSzItvD0Hli5upfo1sKIjRcit0NRs0qOkMrET+lbDdc1aCzJlGFSH0 +ORr4xGMoFd9omQaM17wH1A75h+YxFLnv5MtFZJdUgMEbYLQ83u8ZIUVmw2fkqOh XBX1sBB7mt8cjl3QyCl0SWismCLBHJ8lGDZgd/s9A/ZFV6xtUlAjUBgiMcnTD9XR SfttDLygNegYpGcCdOEVTTPsjlqDT9MEWhCGotiL3jNCyuQWJ4eom79E6sxzkLO1 bFSpc7aCC2SHDzA+RwY9u922X6xzMeegk9eTdjKM6kr91UKBOH1LH97nqF+RKL4O Zbm/p+AtYP4m5dj4m1uBkLXUZuOD6h2D3K8Wuy9VT55UgDFzqHcqawz+nJSKLoiq dL0gnljsJtPLCmk7Oo8TTl9XhBsXB12lt5QegTA7ET8yI3W+IIcEQmd46M2l+2kF /vIxzx2atFs= =CmPY -----END PGP SIGNATURE----- Sat Jan 6 13:04:58 UTC 2024 I: Checking whether the package is not for us Sat Jan 6 13:04:58 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Sat Jan 6 13:04:58 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Sat Jan 6 13:06:19 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 7 07:28:00 -12 2025 I: pbuilder-time-stamp: 1738956480 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [centrifuge_1.0.3-8.dsc] I: copying [./centrifuge_1.0.3.orig.tar.gz] I: copying [./centrifuge_1.0.3-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.in4FRcSv/trustedkeys.kbx': General error gpgv: Signature made Mon Nov 9 17:01:32 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./centrifuge_1.0.3-8.dsc dpkg-source: info: extracting centrifuge in centrifuge-1.0.3 dpkg-source: info: unpacking centrifuge_1.0.3.orig.tar.gz dpkg-source: info: unpacking centrifuge_1.0.3-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_auto_ptr_usage_in_gcc-7.patch dpkg-source: info: applying 0002-Fix-build-with-rank.patch dpkg-source: info: applying 0003-Fix-make-install-DESTDIR.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying no_msse2.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_arm_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3672924/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e69c7bb962bc4f3db9b809508a64699c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3672924' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/pbuilderrc_BT1E --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/b1 --logfile b1/build.log centrifuge_1.0.3-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink01-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 64856 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 10 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 7 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jan 20 2022 more -rwsr-xr-x 1 root root 51360 Jan 20 2022 mount -rwxr-xr-x 1 root root 14496 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 8 15:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jan 20 2022 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/3672924/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, jellyfish dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on jellyfish; however: Package jellyfish is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} jellyfish{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libicu67{a} libjellyfish-2.0-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 26.4 MB of archives. After unpacking 99.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8+deb11u1 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2+deb11u5 [84.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3+deb11u1 [273 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3+deb11u1 [123 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3+deb11u1 [69.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7+deb11u4 [629 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1+deb11u1 [69.4 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1+deb11u1 [105 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3+deb11u1 [222 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+deb11u9 [323 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libjellyfish-2.0-2 arm64 2.3.0-10 [61.0 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 jellyfish arm64 2.3.0-10 [705 kB] Fetched 26.4 MB in 0s (74.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_arm64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18601 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package tzdata. Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../3-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../5-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../7-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20884 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3+deb11u1_arm64.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../19-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../21-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7+deb11u4_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../30-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../31-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../32-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../33-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../34-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../35-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../36-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../37-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../38-libcurl3-gnutls_7.74.0-1.3+deb11u9_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.74.0-1.3+deb11u9) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../39-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libhts3:arm64. Preparing to unpack .../40-libhts3_1.11-4_arm64.deb ... Unpacking libhts3:arm64 (1.11-4) ... Selecting previously unselected package libjellyfish-2.0-2:arm64. Preparing to unpack .../41-libjellyfish-2.0-2_2.3.0-10_arm64.deb ... Unpacking libjellyfish-2.0-2:arm64 (2.3.0-10) ... Selecting previously unselected package jellyfish. Preparing to unpack .../42-jellyfish_2.3.0-10_arm64.deb ... Unpacking jellyfish (2.3.0-10) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 7 19:28:19 UTC 2025. Universal Time is now: Fri Feb 7 19:28:19 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjellyfish-2.0-2:arm64 (2.3.0-10) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+deb11u9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up jellyfish (2.3.0-10) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/centrifuge-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../centrifuge_1.0.3-8_source.changes dpkg-buildpackage: info: source package centrifuge dpkg-buildpackage: info: source version 1.0.3-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' rm -f centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge-build-bin-debug centrifuge-class-debug centrifuge-inspect-bin-debug \ centrifuge-build-bin.exe centrifuge-class.exe centrifuge-inspect-bin.exe centrifuge-build-bin-debug.exe centrifuge-class-debug.exe centrifuge-inspect-bin-debug.exe \ centrifuge-src.zip centrifuge-bin.zip rm -f core.* .tmp.head rm -rf *.dSYM make[1]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' dh_auto_build -- BITS=64 BITS_FLAG= make -j12 "INSTALL=install --strip-program=true" BITS=64 BITS_FLAG= make[2]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' /usr/bin/g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/build/reproducible-path/centrifuge-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-build-bin centrifuge_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp centrifuge_build_main.cpp \ -lpthread /usr/bin/g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/build/reproducible-path/centrifuge-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -DNDEBUG -Wall \ \ -o centrifuge-class centrifuge.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp qual.cpp pat.cpp read_qseq.cpp ref_coord.cpp mask.cpp pe.cpp aligner_seed_policy.cpp scoring.cpp presets.cpp simple_func.cpp random_util.cpp outq.cpp centrifuge_main.cpp \ -lpthread /usr/bin/g++ -O3 -funroll-loops -g3 \ -DCOMPILER_OPTIONS="\"-O3 -funroll-loops -g3 \"" \ -fno-strict-aliasing -DCENTRIFUGE_VERSION="\"1.0.3-beta\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -g -O2 -fdebug-prefix-map=/build/reproducible-path/centrifuge-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -DBOWTIE_MM -Wl,-z,relro -Wl,-z,now -DCENTRIFUGE -DBOWTIE2 -DBOWTIE_64BIT_INDEX -Wall \ -I . \ -o centrifuge-inspect-bin centrifuge_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp reference.cpp ds.cpp limit.cpp random_source.cpp tinythread.cpp \ -lpthread In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge_build.cpp:27: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from hier_idx.h:24, from centrifuge_inspect.cpp:28: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from centrifuge.cpp:34: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from centrifuge_build.cpp:27: bt2_idx.h: In instantiation of 'void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = SString; index_t = long unsigned int; std::ostream = std::basic_ostream]': bt2_idx.h:1492:16: required from 'void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = SString; index_t = long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' bt2_idx.h:881:23: required from 'Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = SString; index_t = long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' centrifuge_build.cpp:472:19: required from 'void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = SString; std::string = std::__cxx11::basic_string]' centrifuge_build.cpp:686:60: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h: In instantiation of 'void Ebwt::buildToDisk(InorderBlockwiseSA&, const TStr&, std::ostream&, std::ostream&, std::ostream*, std::ostream*, const EList&, int) [with TStr = S2bDnaString; index_t = long unsigned int; std::ostream = std::basic_ostream]': bt2_idx.h:1492:16: required from 'void Ebwt::initFromVector(TStr&, EList&, EList&, index_t, const RefReadInParams&, std::ofstream&, std::ofstream&, std::ofstream*, std::ofstream*, int, const string&, const string&, const string&, const string&, const string&, bool, index_t, index_t, index_t, int, int, uint32_t, bool) [with TStr = S2bDnaString; index_t = long unsigned int; std::ofstream = std::basic_ofstream; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' bt2_idx.h:881:23: required from 'Ebwt::Ebwt(TStr&, bool, int, int, int32_t, int32_t, int32_t, const string&, bool, bool, index_t, index_t, index_t, int, int, EList&, EList&, index_t, const string&, const string&, const string&, const string&, const RefReadInParams&, uint32_t, int32_t, bool, bool, int, bool, bool, bool) [with TStr = S2bDnaString; index_t = long unsigned int; int32_t = int; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' centrifuge_build.cpp:472:19: required from 'void driver(const string&, EList >&, const string&, const string&, const string&, const string&, const string&, bool, int) [with TStr = S2bDnaString; std::string = std::__cxx11::basic_string]' centrifuge_build.cpp:706:54: required from here bt2_idx.h:3452:41: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3452 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ bt2_idx.h:3641:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 3641 | for(size_t k = 0; k < kmer_size; k++) { | ~~^~~~~~~~~~~ In file included from centrifuge.cpp:47: classifier.h: In instantiation of 'int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long unsigned int; local_index_t = short unsigned int]': centrifuge.cpp:2660:94: required from here classifier.h:299:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const THitInt' {aka 'const long int'} [-Wsign-compare] 299 | if(coords.size() > rp.ihits) { | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from centrifuge.cpp:47: classifier.h:411:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 411 | if(i + 1 < _hitMap.size()) { | ~~~~~~^~~~~~~~~~~~~~~~ classifier.h:432:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 432 | if(_hitMap[i].rank + 1 >= _hitMap[i].path.size()) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:442:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 442 | uint64_t parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h:475:63: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 475 | uint64_t cur_parent_taxID = (rank + 1 >= _hitMap[i].path.size() ? 1 : _hitMap[i].path[rank + 1]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ classifier.h: In instantiation of 'void Classifier::searchForwardAndReverse(index_t, const Ebwt&, const Scoring&, RandomSource&, const ReportingParams&, index_t) [with index_t = long unsigned int; local_index_t = short unsigned int]': classifier.h:238:13: required from 'int Classifier::go(const Scoring&, const Ebwt&, const Ebwt&, const BitPairReference&, WalkMetrics&, PerReadMetrics&, HIMetrics&, SpeciesMetrics&, RandomSource&, AlnSinkWrap&) [with index_t = long unsigned int; local_index_t = short unsigned int]' centrifuge.cpp:2660:94: required from here classifier.h:850:50: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'const THitInt' {aka 'const long int'} [-Wsign-compare] 850 | hit.size() + rchit.size() > rp.ihits) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ classifier.h:647:16: warning: variable 'cur' set but not used [-Wunused-but-set-variable] 647 | size_t cur[2] = {0, 0} ; | ^~~ In file included from centrifuge.cpp:41: aln_sink.h: In instantiation of 'void AlnSinkSam::appendMate(Ebwt&, BTString&, const Read&, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, size_t) [with index_t = long unsigned int; BTString = SStringExpandable; TReadId = long unsigned int; size_t = long unsigned int]': aln_sink.h:1407:9: required from 'void AlnSinkSam::append(BTString&, size_t, const Read*, const Read*, TReadId, AlnRes*, AlnRes*, const AlnSetSumm&, const PerReadMetrics&, SpeciesMetrics&, bool, size_t) [with index_t = long unsigned int; BTString = SStringExpandable; size_t = long unsigned int; TReadId = long unsigned int]' aln_sink.h:1392:15: required from here aln_sink.h:2302:18: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2302 | for (int i=0; i < this->tab_fmt_cols_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from blockwise_sa.h:29, from bt2_idx.h:44, from bt2_idx.cpp:25: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from diff_sample.cpp:20: diff_sample.h: In function 'void calcExhaustiveDC(T, bool, bool)': diff_sample.h:175:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ diff_sample.h:175:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 175 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ diff_sample.h:176:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ diff_sample.h:176:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 176 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ make[2]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' make[1]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' dh_auto_install -- prefix=/usr/lib/centrifuge make -j12 install DESTDIR=/build/reproducible-path/centrifuge-1.0.3/debian/centrifuge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr/lib/centrifuge make[2]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' mkdir -p /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/bin mkdir -p /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -m 0644 indices/Makefile /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/indices install -d -m 0755 /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc install -m 0644 doc/* /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc for file in centrifuge-build-bin centrifuge-class centrifuge-inspect-bin centrifuge centrifuge-build centrifuge-inspect centrifuge-download centrifuge-kreport centrifuge-BuildSharedSequence.pl centrifuge-RemoveEmptySequence.pl centrifuge-RemoveN.pl centrifuge-compress.pl centrifuge-sort-nt.pl; do \ install -m 0755 $file /build/reproducible-path/centrifuge-1.0.3/debian/centrifuge/usr/lib/centrifuge/bin ; \ done make[2]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' mv debian/centrifuge/usr/lib/centrifuge/bin/* debian/centrifuge/usr/lib/centrifuge/ rmdir debian/centrifuge/usr/lib/centrifuge/bin # move documentation to correct location mkdir -p debian/centrifuge/usr/share/doc/centrifuge/html mv debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*html \ debian/centrifuge/usr/lib/centrifuge/share/centrifuge/doc/*css \ debian/centrifuge/usr/share/doc/centrifuge/html # remove useless stuff in documentation dir rm -rf debian/centrifuge/usr/lib/centrifuge/share/doc/ make[1]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/centrifuge-1.0.3' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done rm -rf debian/*/usr/lib/centrifuge/share/centrifuge/doc find debian -name manual.inc.html | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/centrifuge-1.0.3' dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package centrifuge: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package centrifuge: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'centrifuge' in '../centrifuge_1.0.3-8_arm64.deb'. dpkg-deb: building package 'centrifuge-dbgsym' in '../centrifuge-dbgsym_1.0.3-8_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../centrifuge_1.0.3-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3672924 and its subdirectories I: Current time: Fri Feb 7 07:29:17 -12 2025 I: pbuilder-time-stamp: 1738956557 Sat Jan 6 13:06:20 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Sat Jan 6 13:06:20 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Sat Jan 6 13:07:42 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Sat Jan 6 13:07:43 UTC 2024 I: centrifuge_1.0.3-8_arm64.changes: Format: 1.8 Date: Mon, 09 Nov 2020 17:36:30 +0100 Source: centrifuge Binary: centrifuge centrifuge-dbgsym Architecture: arm64 Version: 1.0.3-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: centrifuge - rapid and memory-efficient system for classification of DNA seque Closes: 973977 Changes: centrifuge (1.0.3-8) unstable; urgency=medium . [ Helmut Grohne ] * Improve cross building: Don't detect -m64 from uname. Closes: #973977 . [ Andreas Tille ] * Revert the patch from 1.0.3-6 in favour of above change Checksums-Sha1: 974e09ad8e018e2c365c9698a1026b3ef0538466 3412208 centrifuge-dbgsym_1.0.3-8_arm64.deb 166eec26db50fa219c825a4466039db9258a5699 6409 centrifuge_1.0.3-8_arm64.buildinfo 2337ace893a7fca9e3a71562fbc826dbfcf57567 504100 centrifuge_1.0.3-8_arm64.deb Checksums-Sha256: 9523fe1e4e46a488e01dbb2b09923323133a2b7a70c359b7cbfa9f5a80cb104c 3412208 centrifuge-dbgsym_1.0.3-8_arm64.deb 7b97c1aef193d8d22f33e545a105afe25e6b19690b1a895e068f1d209d14b6c4 6409 centrifuge_1.0.3-8_arm64.buildinfo 62ebfc0ab064006acacd613d256912a64dbd1397ef17223e48f831fab57e7b2d 504100 centrifuge_1.0.3-8_arm64.deb Files: 28074b81ac23d3f62c6aeec4da37fee9 3412208 debug optional centrifuge-dbgsym_1.0.3-8_arm64.deb 45c6f1be1c97e9ce5a00e7d3a7150899 6409 science optional centrifuge_1.0.3-8_arm64.buildinfo bae5f8c2ac3672ade0c3422a58c39587 504100 science optional centrifuge_1.0.3-8_arm64.deb Sat Jan 6 13:07:44 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/centrifuge_1.0.3-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/centrifuge_1.0.3-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/centrifuge_1.0.3-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/b1/centrifuge_1.0.3-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2a646Iym/b2/centrifuge_1.0.3-8_arm64.changes ## close_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 257.574s) 114.068s 3398 calls readelf 102.709s 365 calls diff 37.263s 528 calls objdump 1.784s 6 calls objcopy 1.454s 22 calls xz 0.295s 77 calls strings 0.002s 23 calls cmp (internal) ## compare_files (cumulative) (total time: 704.383s) 132.933s 1 call abc.DotChangesFile 132.916s 2 calls abc.DebFile 132.854s 4 calls abc.XzFile 132.317s 2 calls abc.DebDataTarFile 131.856s 7 calls abc.ElfFile 38.584s 24 calls diffoscope.comparators.elf.ElfCodeSection 2.035s 112 calls diffoscope.comparators.elf.ElfSection 0.753s 7 calls diffoscope.comparators.elf.ElfStringSection 0.064s 2 calls abc.TarFile 0.048s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.013s 1 call abc.TextFile 0.011s 2 calls abc.Md5sumsFile ## container_extract (total time: 1.621s) 1.455s 22 calls diffoscope.comparators.xz.XzContainer 0.110s 74 calls diffoscope.comparators.deb.DebTarContainer 0.045s 26 calls diffoscope.comparators.deb.DebContainer 0.011s 16 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.063s) 1.063s 502 calls linediff ## has_same_content_as (total time: 0.004s) 0.001s 7 calls abc.ElfFile 0.001s 112 calls diffoscope.comparators.elf.ElfSection 0.001s 5 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 4 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.DebDataTarFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.DebFile 0.000s 24 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call abc.DotChangesFile 0.000s 7 calls diffoscope.comparators.elf.ElfStringSection 0.000s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 137.197s) 137.196s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.deb.DebTarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer ## output (total time: 3.896s) 2.996s 1 call html 0.470s 1 call json 0.430s 1 call text ## recognizes (total time: 1.819s) 1.052s 808 calls diffoscope.comparators.utils.archive.ArchiveMember 0.343s 2464 calls diffoscope.comparators.elf.ElfSection 0.246s 2280 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.069s 528 calls diffoscope.comparators.elf.ElfCodeSection 0.064s 12 calls diffoscope.comparators.binary.FilesystemFile 0.022s 154 calls diffoscope.comparators.elf.ElfStringSection 0.017s 216 calls diffoscope.comparators.debian.DebControlMember 0.005s 66 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 20 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.570s) 0.570s 177 calls specialize Sat Jan 6 13:10:01 UTC 2024 E: centrifuge failed to build reproducibly in bullseye on arm64. Sat Jan 6 13:10:01 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/arm64/centrifuge_1.0.3-8.diffoscope.html Sat Jan 6 13:10:14 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Jan 6 13:10:14 UTC 2024 I: Submitting 8.0K b1/centrifuge_1.0.3-8_arm64.buildinfo.asc Sat Jan 6 13:10:16 UTC 2024 I: Submitting 8.0K b2/centrifuge_1.0.3-8_arm64.buildinfo.asc Sat Jan 6 13:10:17 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jan 6 13:10:17 UTC 2024 I: Done submitting .buildinfo files. Sat Jan 6 13:10:17 UTC 2024 I: Removing signed centrifuge_1.0.3-8_arm64.buildinfo.asc files: removed './b1/centrifuge_1.0.3-8_arm64.buildinfo.asc' removed './b2/centrifuge_1.0.3-8_arm64.buildinfo.asc'