Tue Aug 10 08:22:33 UTC 2021 I: starting to build dssp/bullseye/arm64 on jenkins on '2021-08-10 08:22' Tue Aug 10 08:22:33 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/13882/console.log Tue Aug 10 08:22:33 UTC 2021 I: Downloading source for bullseye/dssp=4.0.0-2 --2021-08-10 08:22:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dssp/dssp_4.0.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2077 (2.0K) Saving to: ‘dssp_4.0.0-2.dsc’ 0K .. 100% 144M=0s 2021-08-10 08:22:33 (144 MB/s) - ‘dssp_4.0.0-2.dsc’ saved [2077/2077] Tue Aug 10 08:22:33 UTC 2021 I: dssp_4.0.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 4.0.0-2 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/dssp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), autoconf-archive, pkg-config, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: 981260a2b8cd67ef536afac1bbc0ff53aca5db15 658085 dssp_4.0.0.orig.tar.gz 35dc8fb7435843bd0aa254359f8ae3b29d23b139 5440 dssp_4.0.0-2.debian.tar.xz Checksums-Sha256: b415b63c1985edb0d1359d08bd6a2d9bd8cb4fc4532ecdc805774d3c72a0de72 658085 dssp_4.0.0.orig.tar.gz 96471530d57b61cdfb2abaee49e10cfab954b30933e5cb17026e798ec0270ce1 5440 dssp_4.0.0-2.debian.tar.xz Files: 97b4188a632784d81c1f442d7ef59c7f 658085 dssp_4.0.0.orig.tar.gz 292af41637768273ebbf7a5de10a5cbd 5440 dssp_4.0.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/caQ0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEIxQ//fPdxBzknjsGEdOPhit8sofayYotL9Qky EkWbOsuCz3zMmnW0RdVg72lK1LOHuSh1a8Q2B9Sbbmw1kmKI60hlG4Txfmj9E/t5 5t5ZvuiG1OfPNBl08hzrVTH/CR6tw3LXKsOsvKkw3Z9pKz5tFDmR6WPQWkKdBjQx yAGKAHfafNMLW7VXR3ffzPdKXIOhesylkhej6RC0PZPzglJ+r3+kJMBzoYb5fUD5 4tqdvwbHXPf0gSvVQzwp0Ivt2wdfQgnkynHwOSRsmUJgor+hNPerrAIV8v/8on47 ZsH+3Sm4/X9BwLmkKseDeTVW6YloPdqtA0+dOeZFskTsj5cCPCBGumLQ2q3CCNac zBbUFcogPPE3VOVwM8buTGD53Th0pu918X1TCKqYOs+Ovy+mEmcEZQF/JNj0h6TZ IgxC7rMZstNxEH7dZMGH2pIt8LePASUEodNIxPZhoXn3ao2popX0Oeo1mT7FzaiJ 6WdS1PT2yV6stG9E3Iyj/jjx4Cm9f8jfYpQ3epYrqwBHGs2KPz0SVltBx+3VfIWQ X7k81M4Q2nDCrWAMKFMu2AAYhRfqQ8FYHc2tmXoADoGHK6ja8QbF0eVGrNI3ikrH UQ+pffhzdVrYPzMWy0sGqGFkCCMrT/HGVie+yYAXstVvhOG2848yG9Nf8RZ+j88A ljXjP4ImaKI= =oAmY -----END PGP SIGNATURE----- Tue Aug 10 08:22:33 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 08:22:33 UTC 2021 I: Starting 1st build on remote node codethink10-arm64.debian.net. Tue Aug 10 08:22:33 UTC 2021 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Tue Aug 10 08:24:48 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 9 20:22:37 -12 2021 I: pbuilder-time-stamp: 1628583757 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dssp_4.0.0-2.dsc] I: copying [./dssp_4.0.0.orig.tar.gz] I: copying [./dssp_4.0.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.AVbry15z/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 17 20:32:13 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dssp_4.0.0-2.dsc dpkg-source: info: extracting dssp in dssp-4.0.0 dpkg-source: info: unpacking dssp_4.0.0.orig.tar.gz dpkg-source: info: unpacking dssp_4.0.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-patch dpkg-source: info: applying makefile dpkg-source: info: applying configure-patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11988/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11988' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/pbuilderrc_h3hg --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/b1 --logfile b1/build.log dssp_4.0.0-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 23:21 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/11988/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), autoconf-archive, pkg-config, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev; however: Package libcifpp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libcifpp-dev{a} libcifpp1{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu-dev{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 43.2 MB of archives. After unpacking 289 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 autoconf-archive all 20190106-2.1 [746 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74.0 arm64 1.74.0-9 [473 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74-dev arm64 1.74.0-9 [549 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams1.74-dev arm64 1.74.0-9 [272 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams-dev arm64 1.74.0.3 [4316 B] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74.0 arm64 1.74.0-9 [344 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74-dev arm64 1.74.0-9 [382 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74.0 arm64 1.74.0-9 [242 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74-dev arm64 1.74.0-9 [243 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libboost-system-dev arm64 1.74.0.3 [4468 B] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libcifpp1 arm64 1.0.1-3 [1352 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libcifpp-dev arm64 1.0.1-3 [65.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Fetched 43.2 MB in 1s (34.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../05-autoconf-archive_20190106-2.1_all.deb ... Unpacking autoconf-archive (20190106-2.1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../08-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... 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Setting up libboost-system1.74.0:arm64 (1.74.0-9) ... Setting up libboost1.74-dev:arm64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:arm64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up autoconf-archive (20190106-2.1) ... Setting up file (1:5.39-3) ... Setting up libboost-program-options1.74-dev:arm64 (1.74.0-9) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libboost-program-options-dev:arm64 (1.74.0.3) ... Setting up libboost-system1.74-dev:arm64 (1.74.0-9) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libboost-regex1.74.0:arm64 (1.74.0-9) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up pkg-config (0.29.2-1) ... Setting up libcifpp1 (1.0.1-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libicu-dev:arm64 (67.1-7) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libboost-system-dev:arm64 (1.74.0.3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up libcifpp-dev (1.0.1-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:arm64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:arm64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:arm64 (1.74.0.3) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dssp-4.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dssp_4.0.0-2_source.changes dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.0.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dssp-4.0.0' dh_auto_configure -- --disable-resources --disable-revision ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-resources --disable-revision checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ supports C++17 features with -std=c++17... yes checking whether C++ compiler accepts -fstandalone-debug... no checking for a BSD-compatible install... /usr/bin/install -c checking for mrc... no configure: WARNING: The mrc application was not found, not using resources. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for a sed that does not truncate output... /bin/sed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking how to run the C++ preprocessor... g++ -std=c++17 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking filesystem usability... yes checking filesystem presence... yes checking for filesystem... yes checking for boostlib >= 1.65.1 (106501)... yes checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Program_Options library is available... yes checking for exit in -lboost_program_options... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for pkg-config... /usr/bin/pkg-config checking for libcifpp ... yes configure: creating ./config.status config.status: creating GNUmakefile config.status: creating src/config.hpp make[1]: Leaving directory '/build/dssp-4.0.0' dh_auto_build make -j8 make[1]: Entering directory '/build/dssp-4.0.0' mkdir -p obj >> src/dssp.cpp -> mkdssp make[1]: Leaving directory '/build/dssp-4.0.0' dh_auto_test make -j8 test VERBOSE=1 make[1]: Entering directory '/build/dssp-4.0.0' obj/dssp.o make[1]: Leaving directory '/build/dssp-4.0.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j8 install DESTDIR=/build/dssp-4.0.0/debian/dssp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/dssp-4.0.0' install -d /build/dssp-4.0.0/debian/dssp/usr/bin install mkdssp /build/dssp-4.0.0/debian/dssp/usr/bin/mkdssp install -d /build/dssp-4.0.0/debian/dssp/usr/share/man/man1 install -m 644 mkdssp.1 /build/dssp-4.0.0/debian/dssp/usr/share/man/man1/mkdssp.1; gzip /build/dssp-4.0.0/debian/dssp/usr/share/man/man1/mkdssp.1; make[1]: Leaving directory '/build/dssp-4.0.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp' in '../dssp_4.0.0-2_arm64.deb'. dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_4.0.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dssp_4.0.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11988 and its subdirectories I: Current time: Mon Aug 9 20:24:47 -12 2021 I: pbuilder-time-stamp: 1628583887 Tue Aug 10 08:24:49 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Tue Aug 10 08:24:49 UTC 2021 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Tue Aug 10 08:27:33 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Tue Aug 10 08:27:34 UTC 2021 I: dssp_4.0.0-2_arm64.changes: Format: 1.8 Date: Fri, 18 Dec 2020 07:42:13 +0100 Source: dssp Binary: dssp dssp-dbgsym Architecture: arm64 Version: 4.0.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: dssp - protein secondary structure assignment based on 3D structure Closes: 977618 Changes: dssp (4.0.0-2) unstable; urgency=medium . * Make build reproducible, Closes: #977618 Checksums-Sha1: fa228ffeea34adade54afc6502599af0bd4b3307 1649084 dssp-dbgsym_4.0.0-2_arm64.deb 3f6f65bb09f8b07a418696662c3f0fa80c6b9be7 5483 dssp_4.0.0-2_arm64.buildinfo 6a4bf1dfb213eb5d0b6785c1ba9f67fcb0f18631 118400 dssp_4.0.0-2_arm64.deb Checksums-Sha256: e7bfcdc4216bfc6e96f7fc20720597545c0ad06945a49abe9bb11d0e12189a48 1649084 dssp-dbgsym_4.0.0-2_arm64.deb 337048607ef6ca422bac172ec1a5390400f6102d49910c997646e3552096864f 5483 dssp_4.0.0-2_arm64.buildinfo 2d7c78734cb9af695848abdeae6e4d124259eb71b1559dbd29ccd457a2299962 118400 dssp_4.0.0-2_arm64.deb Files: 486626ad1f4937e7bc931fa9720fbf1f 1649084 debug optional dssp-dbgsym_4.0.0-2_arm64.deb 21dac415e3c35a3fc4fe1d42dc9d25de 5483 science optional dssp_4.0.0-2_arm64.buildinfo b0948165d091bfc2383fcf0df99fa4d4 118400 science optional dssp_4.0.0-2_arm64.deb Tue Aug 10 08:27:36 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/dssp_4.0.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/dssp_4.0.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/dssp_4.0.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/b1/dssp_4.0.0-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.cEJSORBnC4/b2/dssp_4.0.0-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.473s) 0.472s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.063s) 0.062s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 08:27:40 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 08:27:40 UTC 2021 I: dssp from bullseye built successfully and reproducibly on arm64. Tue Aug 10 08:27:42 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 08:27:42 UTC 2021 I: Submitting 8.0K b1/dssp_4.0.0-2_arm64.buildinfo.asc Tue Aug 10 08:27:43 UTC 2021 I: Submitting 8.0K b2/dssp_4.0.0-2_arm64.buildinfo.asc Tue Aug 10 08:27:44 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 08:27:44 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 08:27:44 UTC 2021 I: Removing signed dssp_4.0.0-2_arm64.buildinfo.asc files: removed './b1/dssp_4.0.0-2_arm64.buildinfo.asc' removed './b2/dssp_4.0.0-2_arm64.buildinfo.asc'