Sat Aug 14 05:04:14 UTC 2021 I: starting to build libtabixpp/bullseye/arm64 on jenkins on '2021-08-14 05:04'
Sat Aug 14 05:04:14 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/34846/console.log
Sat Aug 14 05:04:14 UTC 2021 I: Downloading source for bullseye/libtabixpp=1.1.0-4
--2021-08-14 05:04:14-- http://cdn-fastly.deb.debian.org/debian/pool/main/libt/libtabixpp/libtabixpp_1.1.0-4.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2137 (2.1K)
Saving to: ‘libtabixpp_1.1.0-4.dsc’
0K .. 100% 10.8M=0s
2021-08-14 05:04:14 (10.8 MB/s) - ‘libtabixpp_1.1.0-4.dsc’ saved [2137/2137]
Sat Aug 14 05:04:14 UTC 2021 I: libtabixpp_1.1.0-4.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libtabixpp
Binary: libtabixpp0, libtabixpp-dev
Architecture: any
Version: 1.1.0-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Sascha Steinbiss <satta@debian.org>
Homepage: https://github.com/ekg/tabixpp
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/libtabixpp
Vcs-Git: https://salsa.debian.org/med-team/libtabixpp.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential, tabix
Build-Depends: debhelper-compat (= 13), libhts-dev, zlib1g-dev, libbz2-dev, d-shlibs
Package-List:
libtabixpp-dev deb libdevel optional arch=any
libtabixpp0 deb libs optional arch=any
Checksums-Sha1:
c0865cc97055335ff0cd8ce07b8cb625b27de2fe 3741 libtabixpp_1.1.0.orig.tar.gz
c040496743865d069c87ca81c130188acfaa2798 47600 libtabixpp_1.1.0-4.debian.tar.xz
Checksums-Sha256:
56c8f1b07190aba5e1d0b738e380e726d380f0ad8b2d0df133200b0ab1f8ed88 3741 libtabixpp_1.1.0.orig.tar.gz
32d294442d8b990ac50c420e503f6e359fb08b5afeaa055513122f279256680d 47600 libtabixpp_1.1.0-4.debian.tar.xz
Files:
fc2f1a32854e74a0500604bd14beb6f2 3741 libtabixpp_1.1.0.orig.tar.gz
b5e8861411c37bcac91912c419cffee4 47600 libtabixpp_1.1.0-4.debian.tar.xz
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Sat Aug 14 05:04:15 UTC 2021 I: Checking whether the package is not for us
Sat Aug 14 05:04:15 UTC 2021 I: Starting 1st build on remote node codethink10-arm64.debian.net.
Sat Aug 14 05:04:15 UTC 2021 I: Preparing to do remote build '1' on codethink10-arm64.debian.net.
Sat Aug 14 05:05:11 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Aug 13 17:04:18 -12 2021
I: pbuilder-time-stamp: 1628917458
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libtabixpp_1.1.0-4.dsc]
I: copying [./libtabixpp_1.1.0.orig.tar.gz]
I: copying [./libtabixpp_1.1.0-4.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.IDX6bOK2/trustedkeys.kbx': General error
gpgv: Signature made Thu Jan 28 00:00:11 2021 -12
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libtabixpp_1.1.0-4.dsc
dpkg-source: info: extracting libtabixpp in libtabixpp-1.1.0
dpkg-source: info: unpacking libtabixpp_1.1.0.orig.tar.gz
dpkg-source: info: unpacking libtabixpp_1.1.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying build_shared_lib_with_debian_htslib.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/9485/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
DISTRIBUTION=''
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='9485'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/pbuilderrc_Ppjq --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/b1 --logfile b1/build.log libtabixpp_1.1.0-4.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink10-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux
I: ls -l /bin
total 5252
-rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 39832 Sep 22 2020 cat
-rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 64528 Sep 22 2020 chown
-rwxr-xr-x 1 root root 138896 Sep 22 2020 cp
-rwxr-xr-x 1 root root 129544 Dec 10 2020 dash
-rwxr-xr-x 1 root root 101384 Sep 22 2020 date
-rwxr-xr-x 1 root root 80984 Sep 22 2020 dd
-rwxr-xr-x 1 root root 89824 Sep 22 2020 df
-rwxr-xr-x 1 root root 143088 Sep 22 2020 dir
-rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 35632 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 31512 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt
-rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 178400 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 68720 Sep 22 2020 ln
-rwxr-xr-x 1 root root 52720 Feb 7 2020 login
-rwxr-xr-x 1 root root 143088 Sep 22 2020 ls
-rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk
-rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 51368 Jul 28 07:09 more
-rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount
-rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint
-rwxr-xr-x 1 root root 134808 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash
-rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 68592 Sep 22 2020 rm
-rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 114016 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Aug 12 21:25 sh -> dash
-rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 72640 Sep 22 2020 stty
-rwsr-xr-x 1 root root 67776 Jul 28 07:09 su
-rwxr-xr-x 1 root root 35672 Sep 22 2020 sync
-rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 89120 Sep 22 2020 touch
-rwxr-xr-x 1 root root 31512 Sep 22 2020 true
-rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount
-rwxr-xr-x 1 root root 35640 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/9485/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libhts-dev, zlib1g-dev, libbz2-dev, d-shlibs
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libhts-dev; however:
Package libhts-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget
0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.4 MB of archives. After unpacking 79.7 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB]
Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB]
Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB]
Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB]
Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB]
Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB]
Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB]
Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB]
Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB]
Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB]
Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB]
Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB]
Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB]
Get: 17 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB]
Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB]
Get: 19 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB]
Get: 20 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 21 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 22 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 23 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 24 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 25 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB]
Get: 26 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB]
Get: 27 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get: 28 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB]
Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB]
Get: 30 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 31 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 32 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB]
Get: 33 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB]
Get: 34 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB]
Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB]
Get: 36 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB]
Get: 37 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB]
Get: 38 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB]
Get: 39 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB]
Get: 40 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 41 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB]
Get: 42 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB]
Get: 43 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB]
Get: 44 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB]
Get: 45 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB]
Get: 46 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB]
Get: 47 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB]
Get: 48 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB]
Get: 49 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB]
Fetched 24.4 MB in 1s (24.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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(Reading database ... 19646 files and directories currently installed.)
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.31-13) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/libtabixpp-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtabixpp_1.1.0-4_source.changes
dpkg-buildpackage: info: source package libtabixpp
dpkg-buildpackage: info: source version 1.1.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/libtabixpp-1.1.0'
dh_auto_clean || /bin/true
make -j8 clean
make[2]: Entering directory '/build/libtabixpp-1.1.0'
rm -fr gmon.out *.o a.out *.dSYM tabix++ *~ *.a tabix.aux tabix.log \
tabix.pdf *.class libtabix*.dylib libtabix*so*
make[2]: Leaving directory '/build/libtabixpp-1.1.0'
make[1]: Leaving directory '/build/libtabixpp-1.1.0'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j8 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/libtabixpp-1.1.0'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libtabixpp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c tabix.cpp -Ihtslib
tabix.cpp: In constructor 'Tabix::Tabix(std::string&)':
tabix.cpp:15:32: warning: 'int bgzf_is_bgzf(const char*)' is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations]
15 | if ( bgzf_is_bgzf(cfilename)!=1 )
| ^
In file included from tabix.hpp:4,
from tabix.cpp:1:
/usr/include/htslib/bgzf.h:263:9: note: declared here
263 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead");
| ^~~~~~~~~~~~
g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libtabixpp-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o tabix++ main.cpp tabix.o -Ihtslib -L. -Lhtslib -lhts -lpthread -lm -lbz2 -llzma -lz
g++ -shared -o libtabixpp.so.0 tabix.o -fPIC -Wl,-soname,libtabixpp.so.0 -Wl,-z,relro -Wl,-z,now -lhts
ar rcs libtabixpp.a tabix.o
make[1]: Leaving directory '/build/libtabixpp-1.1.0'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/libtabixpp-1.1.0'
ln -s libtabixpp.so.* libtabixpp.so
d-shlibmove --commit \
--multiarch \
--devunversioned \
--override s/libhts[12]-dev/libhts-dev/ \
--movedev "*.hpp" usr/include/ \
libtabixpp.so
Library package automatic movement utility
--> libhts-dev package exists.
set -e
install -d -m 755 debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libtabixpp0/usr/lib/aarch64-linux-gnu
mv ./libtabixpp.a debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu
mv ./libtabixpp.la debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu || true
mv ./libtabixpp.so debian/libtabixpp-dev/usr/lib/aarch64-linux-gnu
mv /build/libtabixpp-1.1.0/libtabixpp.so.0 debian/libtabixpp0/usr/lib/aarch64-linux-gnu
PKGDEV=libtabixpp-dev
PKGSHL=libtabixpp0
install -d -m 755 debian/libtabixpp-dev/usr/include/
mv *.hpp debian/libtabixpp-dev/usr/include/
mv: cannot stat './libtabixpp.la': No such file or directory
make[1]: Leaving directory '/build/libtabixpp-1.1.0'
dh_installdocs
dh_installchangelogs
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libtabixpp0/DEBIAN/symbols doesn't match completely debian/libtabixpp0.symbols
--- debian/libtabixpp0.symbols (libtabixpp0_1.1.0-4_arm64)
+++ dpkg-gensymbolsWsAt9b 2021-08-13 17:05:02.015446232 -1200
@@ -11,4 +11,5 @@
_ZN5TabixC2Ev@Base 1.0.0
_ZN5TabixD1Ev@Base 1.0.0
_ZN5TabixD2Ev@Base 1.0.0
+ _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.0-4
_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.0.0
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libtabixpp-dev' in '../libtabixpp-dev_1.1.0-4_arm64.deb'.
dpkg-deb: building package 'libtabixpp0' in '../libtabixpp0_1.1.0-4_arm64.deb'.
dpkg-deb: building package 'libtabixpp0-dbgsym' in '../libtabixpp0-dbgsym_1.1.0-4_arm64.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../libtabixpp_1.1.0-4_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/9485 and its subdirectories
I: Current time: Fri Aug 13 17:05:10 -12 2021
I: pbuilder-time-stamp: 1628917510
Sat Aug 14 05:05:12 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net.
Sat Aug 14 05:05:12 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net.
Sat Aug 14 05:06:06 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net.
Sat Aug 14 05:06:06 UTC 2021 I: libtabixpp_1.1.0-4_arm64.changes:
Format: 1.8
Date: Thu, 28 Jan 2021 12:53:36 +0100
Source: libtabixpp
Binary: libtabixpp-dev libtabixpp0 libtabixpp0-dbgsym
Architecture: arm64
Version: 1.1.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
libtabixpp-dev - C++ wrapper to tabix indexer (development files)
libtabixpp0 - C++ wrapper to tabix indexer
Changes:
libtabixpp (1.1.0-4) unstable; urgency=medium
.
* Team upload.
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Update watch file format version to 4.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
Checksums-Sha1:
422ceb390cae3f810483c34538570dc7353ac6fa 8108 libtabixpp-dev_1.1.0-4_arm64.deb
351b4128066484a1eae1a64790e680957befe1b8 58724 libtabixpp0-dbgsym_1.1.0-4_arm64.deb
e7f3d8031444e848e5996670e5880cd1475d95e2 8788 libtabixpp0_1.1.0-4_arm64.deb
9a31795bd09aa599e63e2cd18ee218b008d4b1a2 6085 libtabixpp_1.1.0-4_arm64.buildinfo
Checksums-Sha256:
6dc994d073debd19c424d546640409c887d4f573cf4a8de8f006977e1cb82349 8108 libtabixpp-dev_1.1.0-4_arm64.deb
b3cb42de5875091c36ada9fc863d52e67bbaf2e7539212003e2d8ba4a2a5e574 58724 libtabixpp0-dbgsym_1.1.0-4_arm64.deb
15653fa3693a3dc2743146a167d1836f981c2051ca7bc9cc9110afb0d7026903 8788 libtabixpp0_1.1.0-4_arm64.deb
45188450119cc3dddc71b1c8665f72fd9867ebac8baede292fca8c32cf9bbca9 6085 libtabixpp_1.1.0-4_arm64.buildinfo
Files:
34985db995f70eb15fca615def4535bc 8108 libdevel optional libtabixpp-dev_1.1.0-4_arm64.deb
b5dc3b22af40861d1df133cec8a53ed3 58724 debug optional libtabixpp0-dbgsym_1.1.0-4_arm64.deb
a560c07a5cf68e2900547a66da64b4ca 8788 libs optional libtabixpp0_1.1.0-4_arm64.deb
e2a61eade46dd54ef6c492cfb55b7037 6085 science optional libtabixpp_1.1.0-4_arm64.buildinfo
Sat Aug 14 05:06:08 UTC 2021 I: diffoscope 177 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/libtabixpp_1.1.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/libtabixpp_1.1.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/libtabixpp_1.1.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/b1/libtabixpp_1.1.0-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.7Wp3ilHjTv/b2/libtabixpp_1.1.0-4_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.273s)
0.273s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.022s)
0.021s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Sat Aug 14 05:06:09 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists.
Sat Aug 14 05:06:09 UTC 2021 I: libtabixpp from bullseye built successfully and reproducibly on arm64.
Sat Aug 14 05:06:11 UTC 2021 I: Submitting .buildinfo files to external archives:
Sat Aug 14 05:06:11 UTC 2021 I: Submitting 8.0K b1/libtabixpp_1.1.0-4_arm64.buildinfo.asc
Sat Aug 14 05:06:12 UTC 2021 I: Submitting 8.0K b2/libtabixpp_1.1.0-4_arm64.buildinfo.asc
Sat Aug 14 05:06:12 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Aug 14 05:06:12 UTC 2021 I: Done submitting .buildinfo files.
Sat Aug 14 05:06:12 UTC 2021 I: Removing signed libtabixpp_1.1.0-4_arm64.buildinfo.asc files:
removed './b1/libtabixpp_1.1.0-4_arm64.buildinfo.asc'
removed './b2/libtabixpp_1.1.0-4_arm64.buildinfo.asc'