Sun Jan 7 04:23:08 UTC 2024 I: starting to build macs/bullseye/arm64 on jenkins on '2024-01-07 04:22' Sun Jan 7 04:23:08 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/18395/console.log Sun Jan 7 04:23:08 UTC 2024 I: Downloading source for bullseye/macs=2.2.7.1-3 --2024-01-07 04:23:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macs/macs_2.2.7.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) [text/prs.lines.tag] Saving to: ‘macs_2.2.7.1-3.dsc’ 0K .. 100% 304M=0s 2024-01-07 04:23:08 (304 MB/s) - ‘macs_2.2.7.1-3.dsc’ saved [2102/2102] Sun Jan 7 04:23:08 UTC 2024 I: macs_2.2.7.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 2.2.7.1-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps Package-List: macs deb science optional arch=any Checksums-Sha1: 403dd5bb27a43d23b047e13f1ca7b46e7260bc76 134872405 macs_2.2.7.1.orig.tar.gz 68332c8e20356ed0356364a6d105054abe97f324 1267660 macs_2.2.7.1-3.debian.tar.xz Checksums-Sha256: 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 134872405 macs_2.2.7.1.orig.tar.gz ec8667e7d3c85f3de72a87238266236470dd8c04a5631ad0f75f31545f5ee6f5 1267660 macs_2.2.7.1-3.debian.tar.xz Files: 3b669e6b847e5d2edd9b9ab4b58edae9 134872405 macs_2.2.7.1.orig.tar.gz c1b0b0f58baae3f2d4cf1221dc19e46f 1267660 macs_2.2.7.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8PecARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Lg//W9BV+5dYgxhbCdtHFfLHzUeiS4fiB7XG gcfgUkWAkJ1uJd10mCKguekUjY7n75vVGOrryQScD6UmUdP2YhPvG3KdsIUVbhwW joDbKeF0SfLT5LtyM1jNlXPsUxQ98ZOIs6xeKndDWp+SBLEzJO+Jdl3xOv2+oH00 O8W90gm4tNhTV0JWRqgFfz77AituqOSEyiTazkWD8fgsh36eDr9pq9Yo8V5ofoOq CFZ8VHubw+5T1k080CfEfQjvJDmWUZO1yTQV1l3pZyQgaY7kAzVZrrEEXfbHlMt4 WxPfNZGI+lD2JgYGBJTUP7UvEX5rJqyZ4lhY8zpSsjb2y402ZBiG9PV38LkLFa+c pxXF5GSPKOsCpcdy3iUX+QUeVLQf8YpQuqLfjBUuomsLSDEkVifPOweLVpJWn6v/ T+HewyFTHlCWiOA8wzVhSEX46d7x0qVdkI/uBg6CRzu+SaMX5924SRPUSRJhVzA+ UKYoIHdnLWsckfv3nytTGBNSixtleNLGwjE1Kzj3MUTPBd0lrmKjSJu4DqAGt09b JG+pwmw+cNK1QAoMk+GOzD7OH6KBsW7fT1BV9OlRYY944zw3pNpDBjYl6wuMvbBk rxn+Cf5M0q0w/XEw5tzNpoTvKKJuowEet2dh9XozrBu+X5AKF+Mr5Jxw0pNyK/ya Ud2TCytTlCA= =3Wug -----END PGP SIGNATURE----- Sun Jan 7 04:23:08 UTC 2024 I: Checking whether the package is not for us Sun Jan 7 04:23:08 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sun Jan 7 04:23:08 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sun Jan 7 04:27:47 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 7 22:46:13 -12 2025 I: pbuilder-time-stamp: 1739011573 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macs_2.2.7.1-3.dsc] I: copying [./macs_2.2.7.1.orig.tar.gz] I: copying [./macs_2.2.7.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.n05IvKu2/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 15 21:48:48 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macs_2.2.7.1-3.dsc dpkg-source: info: extracting macs in macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/904564/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a2714f0d2fc745718707daa181444ef7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='904564' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/pbuilderrc_9VMQ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/b1 --logfile b1/build.log macs_2.2.7.1-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink03-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 64856 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 10 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 7 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jan 20 2022 more -rwsr-xr-x 1 root root 51360 Jan 20 2022 mount -rwxr-xr-x 1 root root 14496 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 8 15:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jan 20 2022 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jan 20 2022 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/904564/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libpipeline1{a} libprocps8{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} procps{a} python-pip-whl{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx psmisc python3-pygments wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After unpacking 167 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8+deb11u1 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2+deb11u5 [84.1 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 tzdata all 2021a-1+deb11u10 [286 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2+deb11u2 [93.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1w-0+deb11u1 [837 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3+deb11u1 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3+deb11u1 [123 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3+deb11u1 [69.2 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 cython3 arm64 0.29.21-3+b1 [1239 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7+deb11u4 [629 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 help2man arm64 1.48.1 [190 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3+deb11u1 [100 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2+deb11u5 [128 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3+deb11u1 [1538 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libpython3-all-dev arm64 3.9.2-3 [1068 B] Get: 67 http://deb.debian.org/debian bullseye/main arm64 python-pip-whl all 20.3.4-4+deb11u1 [1948 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 69 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2+deb11u2 [189 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-all-dev arm64 3.9.2-3 [1064 B] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-attr all 20.3.0-1 [52.9 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 python3-zipp all 1.0.0-3 [6060 B] Get: 77 http://deb.debian.org/debian bullseye/main arm64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 79 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 python3-packaging all 20.9-2 [33.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 python3-wheel all 0.34.2-1 [24.0 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 python3-pip all 20.3.4-4+deb11u1 [337 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 python3-py all 1.10.0-1 [94.2 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 python3-toml all 0.10.1-1 [15.9 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 python3-pytest all 6.0.2-2 [211 kB] Fetched 42.4 MB in 0s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17734 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_arm64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../57-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../58-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../59-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../60-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../61-python3-numpy_1%3a1.19.5-1_arm64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pyparsing. 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Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 8 10:46:42 UTC 2025. Universal Time is now: Sat Feb 8 10:46:42 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.10-2+deb11u5) ... Setting up libncurses6:arm64 (6.2+20201114-2+deb11u2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... 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Setting up python3-toml (0.10.1-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up libpython3-all-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-pip (20.3.4-4+deb11u1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/macs-2.2.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_2.2.7.1-3_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-3* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/MACS2 aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Prob.c -o build/temp.linux-arm64-3.9/MACS2/Prob.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/Prob.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-arm64-3.9/MACS2/IO aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/Parser.c -o build/temp.linux-arm64-3.9/MACS2/IO/Parser.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/Parser.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-aarch64-linux-gnu.so building 'MACS2.Pileup' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Pileup.c -o build/temp.linux-arm64-3.9/MACS2/Pileup.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/cPosValCalculation.c -o build/temp.linux-arm64-3.9/MACS2/cPosValCalculation.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/Pileup.o build/temp.linux-arm64-3.9/MACS2/cPosValCalculation.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-aarch64-linux-gnu.so building 'MACS2.PeakModel' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/PeakModel.c -o build/temp.linux-arm64-3.9/MACS2/PeakModel.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/PeakModel.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-aarch64-linux-gnu.so building 'MACS2.PeakDetect' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/PeakDetect.c -o build/temp.linux-arm64-3.9/MACS2/PeakDetect.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/PeakDetect.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-aarch64-linux-gnu.so building 'MACS2.Signal' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Signal.c -o build/temp.linux-arm64-3.9/MACS2/Signal.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/Signal.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.PeakIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/PeakIO.c -o build/temp.linux-arm64-3.9/MACS2/IO/PeakIO.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/PeakIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-arm64-3.9/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/BedGraphIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-arm64-3.9/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/FixWidthTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-arm64-3.9/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/PairedEndTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.BedGraph' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraph.c -o build/temp.linux-arm64-3.9/MACS2/IO/BedGraph.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/BedGraph.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-arm64-3.9/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/ScoreTrack.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-aarch64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension aarch64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-PN012d/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-arm64-3.9/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/MACS2/IO/CallPeakUnit.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/macs2 -> build/scripts-3.9 changing mode of build/scripts-3.9/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_test I: pybuild base:232: cd /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/reproducible-path/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ======================== 41 passed, 1 skipped in 0.29s ========================= make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/macs-2.2.7.1/debian/macs running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/Constants.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-aarch64-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/Constants.py to Constants.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-39.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.9/macs2 -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs' in '../macs_2.2.7.1-3_arm64.deb'. dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../macs_2.2.7.1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/904564 and its subdirectories I: Current time: Fri Feb 7 22:50:45 -12 2025 I: pbuilder-time-stamp: 1739011845 Sun Jan 7 04:27:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Sun Jan 7 04:27:48 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Sun Jan 7 04:32:14 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Sun Jan 7 04:32:15 UTC 2024 I: macs_2.2.7.1-3_arm64.changes: Format: 1.8 Date: Wed, 15 Jul 2020 23:27:39 +0200 Source: macs Binary: macs macs-dbgsym Architecture: arm64 Version: 2.2.7.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Closes: 965073 Changes: macs (2.2.7.1-3) unstable; urgency=medium . * Link properly with libm Closes: #965073 * debhelper-compat 13 (routine-update) Checksums-Sha1: 92fa221c208dccd9fb2e0ae0ad9a0b31469bda8b 6906260 macs-dbgsym_2.2.7.1-3_arm64.deb 32a4bf1478953ea197c93b9988e90068f4643b47 7087 macs_2.2.7.1-3_arm64.buildinfo 5005cd219bd42edee16c459b74dd5fb5afe2861d 2352744 macs_2.2.7.1-3_arm64.deb Checksums-Sha256: 7fb5aff1a1d06c7b8ef809442f51cd640028e1ae5a749655a48a03431b30ef2c 6906260 macs-dbgsym_2.2.7.1-3_arm64.deb c7c3a20be54092098d70894b5339e21b0c56d4840db0502915d6f65e4cf2ed96 7087 macs_2.2.7.1-3_arm64.buildinfo 39af221c6ec67c4ce339ff8581e3d4946e5b06d3e02f32093390d5a72bed255a 2352744 macs_2.2.7.1-3_arm64.deb Files: 9e0ebeae0c871c2dd754685e1a78a8dd 6906260 debug optional macs-dbgsym_2.2.7.1-3_arm64.deb e5e8da6a838a7ecdeb9693864a0281c7 7087 science optional macs_2.2.7.1-3_arm64.buildinfo eee4a8677dcbf7c043cced1371343d35 2352744 science optional macs_2.2.7.1-3_arm64.deb Sun Jan 7 04:32:16 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/macs_2.2.7.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/macs_2.2.7.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/macs_2.2.7.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/b1/macs_2.2.7.1-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1wKDfIi9/b2/macs_2.2.7.1-3_arm64.changes ## close_archive (total time: 0.001s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer ## command (total time: 255.641s) 110.451s 3836 calls readelf 97.248s 426 calls diff 38.218s 704 calls objdump 4.674s 8 calls objcopy 4.569s 24 calls xz 0.471s 88 calls strings 0.003s 1 call cmp 0.003s 1 call cmp (external) 0.002s 25 calls cmp (internal) ## compare_files (cumulative) (total time: 689.616s) 130.045s 1 call abc.DotChangesFile 130.001s 2 calls abc.DebFile 129.875s 4 calls abc.XzFile 128.461s 2 calls abc.DebDataTarFile 127.867s 8 calls abc.ElfFile 40.319s 32 calls diffoscope.comparators.elf.ElfCodeSection 2.666s 124 calls diffoscope.comparators.elf.ElfSection 0.189s 8 calls diffoscope.comparators.elf.ElfStringSection 0.104s 2 calls abc.TarFile 0.058s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.017s 1 call abc.TextFile 0.015s 2 calls abc.Md5sumsFile ## container_extract (total time: 5.159s) 4.571s 24 calls diffoscope.comparators.xz.XzContainer 0.430s 156 calls diffoscope.comparators.deb.DebTarContainer 0.141s 28 calls diffoscope.comparators.deb.DebContainer 0.017s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.656s) 0.656s 110 calls linediff ## has_same_content_as (total time: 0.010s) 0.004s 2 calls abc.DebDataTarFile 0.002s 8 calls abc.ElfFile 0.001s 124 calls diffoscope.comparators.elf.ElfSection 0.001s 6 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.TarFile 0.000s 32 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 2 calls abc.DebFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls diffoscope.comparators.elf.ElfStringSection 0.000s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 132.553s) 132.552s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 1.476s) 1.472s 1 call html 0.002s 1 call text 0.002s 1 call json ## recognizes (total time: 5.421s) 3.477s 828 calls diffoscope.comparators.utils.archive.ArchiveMember 0.663s 2616 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.663s 12 calls diffoscope.comparators.binary.FilesystemFile 0.408s 2728 calls diffoscope.comparators.elf.ElfSection 0.114s 704 calls diffoscope.comparators.elf.ElfCodeSection 0.066s 216 calls diffoscope.comparators.debian.DebControlMember 0.024s 176 calls diffoscope.comparators.elf.ElfStringSection 0.005s 88 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.813s) 0.813s 198 calls specialize Sun Jan 7 04:34:29 UTC 2024 E: macs failed to build reproducibly in bullseye on arm64. Sun Jan 7 04:34:29 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/arm64/macs_2.2.7.1-3.diffoscope.html Sun Jan 7 04:34:35 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jan 7 04:34:35 UTC 2024 I: Submitting 8.0K b1/macs_2.2.7.1-3_arm64.buildinfo.asc Sun Jan 7 04:34:36 UTC 2024 I: Submitting 8.0K b2/macs_2.2.7.1-3_arm64.buildinfo.asc Sun Jan 7 04:34:37 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 7 04:34:37 UTC 2024 I: Done submitting .buildinfo files. Sun Jan 7 04:34:37 UTC 2024 I: Removing signed macs_2.2.7.1-3_arm64.buildinfo.asc files: removed './b1/macs_2.2.7.1-3_arm64.buildinfo.asc' removed './b2/macs_2.2.7.1-3_arm64.buildinfo.asc'