Fri Jul 23 22:57:04 UTC 2021 I: starting to build mmseqs2/bullseye/arm64 on jenkins on '2021-07-23 22:56' Fri Jul 23 22:57:04 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/474/console.log Fri Jul 23 22:57:04 UTC 2021 I: Downloading source for bullseye/mmseqs2=12-113e3+ds-3 --2021-07-23 22:57:05-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mmseqs2/mmseqs2_12-113e3+ds-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2357 (2.3K) Saving to: ‘mmseqs2_12-113e3+ds-3.dsc’ 0K .. 100% 175M=0s 2021-07-23 22:57:05 (175 MB/s) - ‘mmseqs2_12-113e3+ds-3.dsc’ saved [2357/2357] Fri Jul 23 22:57:05 UTC 2021 I: mmseqs2_12-113e3+ds-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mmseqs2 Binary: mmseqs2, mmseqs2-examples Architecture: amd64 arm64 armel armhf i386 mips64el mipsel ppc64el alpha ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 sh4 x32 all Version: 12-113e3+ds-3 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Shayan Doust <hello@shayandoust.me> Homepage: https://github.com/soedinglab/MMseqs2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Arch: cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev Package-List: mmseqs2 deb science optional arch=amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,alpha,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,sh4,x32 mmseqs2-examples deb science optional arch=all Checksums-Sha1: 7b71b24b6e0e8bb82e5bdc228bd907b9ba202a5a 4503844 mmseqs2_12-113e3+ds.orig.tar.xz 41e7e2a497f61e278c4afffd1208c8804987097d 6552572 mmseqs2_12-113e3+ds-3.debian.tar.xz Checksums-Sha256: d4ade263b54c536a7770f260f6a87baecf6c7f4810672341c69e4a71e5dfef0e 4503844 mmseqs2_12-113e3+ds.orig.tar.xz 1fbbc6f718b74f909b0ba4bc7b50c3c00509ad177ad659a5064cd624048aeffc 6552572 mmseqs2_12-113e3+ds-3.debian.tar.xz Files: 6a947b808b8e0139b8c2b5025263893b 4503844 mmseqs2_12-113e3+ds.orig.tar.xz aad24227ae5fd65a79bd0d0fa089d2a4 6552572 mmseqs2_12-113e3+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAmkVoACgkQPCZ2P2xn 5uLxIg/9HO+JAomKGTYP72qltjN9X9bv6w2ZYr8aSoudvVlJBwe0PF2axLrDtpR6 TP6N6H6jebJxGmDJX0+ko48l2rfUnjwJDyxzChlWua/3nvntNVsBjVTk4pfOOJ4o fvnDJJTjFp4KrVnjyW3aSuCMRvB/AxEpKRaNJn64O4WyCHY5f15JGzZFvLbOoB33 6fAX5jHzcCQa/YGI2Fgq8nvNE4qUNqzuCQ0Nt1pjcjvbPrK+XKfPYJ/Oplqq5s4l EMsEqAfSGUbhX+SFXw5iKjzDPTqDvQCHmhC9yN0g05umLaS4XGBwFOmfav8ahYoG vk32EO6smSQCDoS6aiDgIKbEacaVq2i0b/ZEuiEKMW6z1ONN8+0iaEJAlGW3I+uC 5su9H9XU3NrALxZBzr2s28ekIFzLB9M+r/x4jkDc97viujMePv8mCal5JqE2Hfd1 4AgQ74SDCTHBCHq+ywt6XZvJEK49Kyjk8RiE3pfRc579xrmkU19ke2tEshf9QTvN XuDP6o/MD60QyoVrgDSlY3dn/nVctflxyXdWgEJ1wwdtESy6MqqbjpXZt6L5rZ/Y kWBgathtV+puaWCLoGlCUnWVIFVmyQxQMYlkOhp5Iv6gp6CIRxqGyxXL0ppDJF9T ngq9h/PqjOjF3JhEhfi98vvMFuy4n6c+q+tIjhLlLeOwyX0la08= =C2DD -----END PGP SIGNATURE----- Fri Jul 23 22:57:05 UTC 2021 I: Checking whether the package is not for us Fri Jul 23 22:57:05 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net. Fri Jul 23 22:57:05 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Fri Jul 23 23:03:47 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 25 17:20:09 -12 2022 I: pbuilder-time-stamp: 1661491209 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mmseqs2_12-113e3+ds-3.dsc] I: copying [./mmseqs2_12-113e3+ds.orig.tar.xz] I: copying [./mmseqs2_12-113e3+ds-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.vM0Nzp25/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 12 02:31:54 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmseqs2_12-113e3+ds-3.dsc dpkg-source: info: extracting mmseqs2 in mmseqs2-12-113e3+ds dpkg-source: info: unpacking mmseqs2_12-113e3+ds.orig.tar.xz dpkg-source: info: unpacking mmseqs2_12-113e3+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying simde_tweak dpkg-source: info: applying fix_tests.patch dpkg-source: info: applying fix_util_installation.patch dpkg-source: info: applying use_system_zstd.patch dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3082/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3082' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/pbuilderrc_BN3I --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/b1 --logfile b1/build.log mmseqs2_12-113e3+ds-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 24 03:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/3082/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbz2-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgzstream-dev{a} libgzstream0{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 26.9 MB of archives. After unpacking 110 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libgzstream0 arm64 1.5+dfsg-5 [6664 B] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libgzstream-dev arm64 1.5+dfsg-5 [7008 B] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libsimde-dev all 0.7.2-4 [259 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libzstd-dev arm64 1.4.8+dfsg-2.1 [358 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Fetched 26.9 MB in 1s (45.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../05-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../19-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../20-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../21-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../30-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../32-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:arm64. Preparing to unpack .../33-libjsoncpp24_1.9.4-4_arm64.deb ... Unpacking libjsoncpp24:arm64 (1.9.4-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../34-librhash0_1.4.1-2_arm64.deb ... Unpacking librhash0:arm64 (1.4.1-2) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../35-libuv1_1.40.0-2_arm64.deb ... Unpacking libuv1:arm64 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../36-cmake_3.18.4-2_arm64.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../41-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../44-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../50-libbz2-dev_1.0.8-4_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-4) ... Selecting previously unselected package libgzstream0. Preparing to unpack .../51-libgzstream0_1.5+dfsg-5_arm64.deb ... Unpacking libgzstream0 (1.5+dfsg-5) ... Selecting previously unselected package libgzstream-dev. Preparing to unpack .../52-libgzstream-dev_1.5+dfsg-5_arm64.deb ... Unpacking libgzstream-dev (1.5+dfsg-5) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../53-libsimde-dev_0.7.2-4_all.deb ... Unpacking libsimde-dev (0.7.2-4) ... Selecting previously unselected package libzstd-dev:arm64. Preparing to unpack .../54-libzstd-dev_1.4.8+dfsg-2.1_arm64.deb ... Unpacking libzstd-dev:arm64 (1.4.8+dfsg-2.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../55-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libsimde-dev (0.7.2-4) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libzstd-dev:arm64 (1.4.8+dfsg-2.1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:arm64 (1.40.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libgzstream0 (1.5+dfsg-5) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:arm64 (1.4.1-2) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libbz2-dev:arm64 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2+b1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgzstream-dev (1.5+dfsg-5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_12-113e3+ds-3_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_auto_clean rm -Rf build-* make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_auto_configure -- -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 -- The C compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Source Directory: /build/mmseqs2-12-113e3+ds -- Project Directory: /build/mmseqs2-12-113e3+ds -- Compiler is GNU -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_LIBRARY_NATIVE -- Performing Test ATOMIC_LIBRARY_NATIVE - Failed -- Performing Test ATOMIC_LIBRARY_LIB -- Performing Test ATOMIC_LIBRARY_LIB - Success -- Found Atomic: atomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/cacode /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend Dependee "/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar/CMakeFiles/microtar.dir/depend.internal". 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/build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp [ 2%] 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/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h [ 2%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c [ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 3%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h [ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp [ 4%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h [ 4%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 [ 4%] Generating ../generated/nucleotide.out.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h [ 4%] Built target version /usr/bin/ranlib libmicrotar.a make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 4%] Built target microtar [ 5%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out [ 5%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp [ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h [ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated [ 8%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h [ 9%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h [ 10%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h [ 10%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp [ 11%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h [ 12%] Generating ../generated/easysearch.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh [ 12%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated [ 12%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp [ 13%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' [ 14%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh [ 14%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h [ 14%] Built target tinyexpr cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h [ 15%] Generating ../generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh [ 15%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh [ 16%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/map.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h [ 17%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h [ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp [ 18%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp [ 18%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h [ 18%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp [ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h [ 19%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h [ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h [ 21%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h [ 21%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated [ 21%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h [ 22%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp [ 22%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h [ 22%] Generating ../generated/taxonomy.sh.h [ 23%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h [ 23%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated [ 23%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h [ 24%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp [ 24%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h [ 25%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated [ 25%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h [ 26%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh [ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp [ 28%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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-fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/linclust/LinsearchIndexReader.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o ../lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o ../lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o ../lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o ../lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o /usr/bin/ranlib libmmseqs-framework.a make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' [ 99%] Built target mmseqs-framework make -f src/CMakeFiles/mmseqs.dir/build.make src/CMakeFiles/mmseqs.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src/CMakeFiles/mmseqs.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src/CMakeFiles/mmseqs.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src/CMakeFiles/mmseqs.dir/depend.internal". 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Scanning dependencies of target mmseqs make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/mmseqs.dir/build.make src/CMakeFiles/mmseqs.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' [100%] Building CXX object src/CMakeFiles/mmseqs.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs cd /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs.dir/mmseqs.cpp.o -o mmseqs libmmseqs-framework.a version/libversion.a -latomic ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' [100%] Built target mmseqs make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-aarch64-linux-gnu' dh_install -pmmseqs2 usr/bin/mmseqs usr/bin/ make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' debian/rules override_dh_install-arch make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataGap debian/mmseqs2/usr/lib/mmseqs2/test/ cp src/test/dataLinear debian/mmseqs2/usr/lib/mmseqs2/test/ #cp -r obj-aarch64-linux-gnu/src/test debian/mmseqs2/usr/lib/mmseqs2/ # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' debian/rules override_dh_install-indep make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' dh_md5sums dh_builddeb dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_arm64.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_arm64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_12-113e3+ds-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmseqs2_12-113e3+ds-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3082 and its subdirectories I: Current time: Thu Aug 25 17:26:43 -12 2022 I: pbuilder-time-stamp: 1661491603 Fri Jul 23 23:03:48 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Fri Jul 23 23:03:48 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Fri Jul 23 23:23:09 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Fri Jul 23 23:23:09 UTC 2021 I: mmseqs2_12-113e3+ds-3_arm64.changes: Format: 1.8 Date: Fri, 12 Feb 2021 15:31:20 +0100 Source: mmseqs2 Binary: mmseqs2 mmseqs2-dbgsym mmseqs2-examples Architecture: arm64 all Version: 12-113e3+ds-3 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <crusoe@debian.org> Description: mmseqs2 - ultra fast and sensitive protein search and clustering mmseqs2-examples - optional resources for the mmseqs2 package Changes: mmseqs2 (12-113e3+ds-3) unstable; urgency=high . * Team upload. * debian/control: disable building on big-endian at the request of upstream. Checksums-Sha1: 1fce14cda49550647d5e93f1d4ccde97cee9e119 19725140 mmseqs2-dbgsym_12-113e3+ds-3_arm64.deb 9797306d6bbbbe2a85d96866a90ad438f29de73e 6963708 mmseqs2-examples_12-113e3+ds-3_all.deb 62b12d385f1b8ebe598825668e3ba8f82760217c 6124 mmseqs2_12-113e3+ds-3_arm64.buildinfo 6dae3b1999d9f37279d8462ec0deec9f9f8ab305 4497544 mmseqs2_12-113e3+ds-3_arm64.deb Checksums-Sha256: 6e09f1ae8921c08aca2373452f110d2a1bfaef2fb35c07d9db80c6535f156bf9 19725140 mmseqs2-dbgsym_12-113e3+ds-3_arm64.deb 4bff4d03986ff8ca98c214d06c15c48a11386e36d7f4b03eca30ccd762f562e0 6963708 mmseqs2-examples_12-113e3+ds-3_all.deb 2c78364587c55c12ea96cccd97a48a454ffaafa52bc4f312259670843a5d001c 6124 mmseqs2_12-113e3+ds-3_arm64.buildinfo e07ceb709b7e4739a72388e1385b5c05e7cec87c75b5e71b368bd2ae4c5c915d 4497544 mmseqs2_12-113e3+ds-3_arm64.deb Files: 48a68488082f3328723af99637fcdf13 19725140 debug optional mmseqs2-dbgsym_12-113e3+ds-3_arm64.deb 60cbf35e21a4474bc31d11f71d8e460f 6963708 science optional mmseqs2-examples_12-113e3+ds-3_all.deb aac124796c1da5248bc82a1430767876 6124 science optional mmseqs2_12-113e3+ds-3_arm64.buildinfo 5413df3aa1560d43f4275d34cfafdd61 4497544 science optional mmseqs2_12-113e3+ds-3_arm64.deb Fri Jul 23 23:23:11 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/mmseqs2_12-113e3+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/mmseqs2_12-113e3+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/mmseqs2_12-113e3+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/b1/mmseqs2_12-113e3+ds-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.UDLEsY64l2/b2/mmseqs2_12-113e3+ds-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.587s) 0.587s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.331s) 0.331s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 23 23:23:13 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 23 23:23:13 UTC 2021 I: mmseqs2 from bullseye built successfully and reproducibly on arm64. Fri Jul 23 23:23:14 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 23 23:23:14 UTC 2021 I: Submitting 8.0K b1/mmseqs2_12-113e3+ds-3_arm64.buildinfo.asc Fri Jul 23 23:23:16 UTC 2021 I: Submitting 8.0K b2/mmseqs2_12-113e3+ds-3_arm64.buildinfo.asc Fri Jul 23 23:23:18 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 23 23:23:18 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 23 23:23:18 UTC 2021 I: Removing signed mmseqs2_12-113e3+ds-3_arm64.buildinfo.asc files: removed './b1/mmseqs2_12-113e3+ds-3_arm64.buildinfo.asc' removed './b2/mmseqs2_12-113e3+ds-3_arm64.buildinfo.asc'