Wed Jul 7 00:40:17 UTC 2021 I: starting to build molmodel/bullseye/arm64 on jenkins on '2021-07-07 00:40' Wed Jul 7 00:40:17 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_29/7473/console.log Wed Jul 7 00:40:17 UTC 2021 I: Downloading source for bullseye/molmodel=3.0~svn842-2 --2021-07-07 00:40:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/molmodel/molmodel_3.0~svn842-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) Saving to: ‘molmodel_3.0~svn842-2.dsc’ 0K .. 100% 175M=0s 2021-07-07 00:40:17 (175 MB/s) - ‘molmodel_3.0~svn842-2.dsc’ saved [2102/2102] Wed Jul 7 00:40:17 UTC 2021 I: molmodel_3.0~svn842-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: molmodel Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.0 Architecture: any Version: 3.0~svn842-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/molmodel Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git Build-Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev Package-List: libsimtkmolmodel-dev deb libdevel optional arch=any libsimtkmolmodel3.0 deb libs optional arch=any Checksums-Sha1: 104f117c3346b127a5e82fb18402d040f683f28b 8559120 molmodel_3.0~svn842.orig.tar.xz 82df865b6fc9104a5dfc05a21fcfe0af142e9695 7784 molmodel_3.0~svn842-2.debian.tar.xz Checksums-Sha256: ae9a9a0528a3a0ba53f8fdd7b51f8e66e18ce7e2fdd1764e38764f813ad033b5 8559120 molmodel_3.0~svn842.orig.tar.xz 252308ff9362e589f65379d561aeaa43571da202069a8b320589938798e2a53e 7784 molmodel_3.0~svn842-2.debian.tar.xz Files: 6f64ededc4bc934a924c615fbe341ae6 8559120 molmodel_3.0~svn842.orig.tar.xz d73170b19b1c3f6b5203f9461bf96b3c 7784 molmodel_3.0~svn842-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl7q7SESHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHMe8QAKSkaKMVjkv2Qs5NlusAaAhN9NRYkd8W X3YZHfS7e+D1SA2ua0FDFyxfi1tICSPvZgQnTbPsRC0SUInNhfoWLDPqG+czHm/E Xhgvd2DqLos0aCaKOzzTRFJjDLVWkepAWbIHaWBN3XuD+AeXJP7O8WFpV5ntoE2C tT66CqiH9f7CWwGyw28s6BP6cMGxwaChxW+fMayT4tV8LgTYWFHdgHaqrJhrB9Wc GQGrxhYxGTRxL8r4JScFim5LvGO5sYXD/nDdJiWt3Vbb/dVb06+I3j/4jpMT85wx GAtxMcyAGGo+g2NCJLXcwpd+tbWr7cCfx/3FBgRNXmfVTaw79Ttz4hSp3/IPL+5x Y5Lape9ORgTdv0bOh6XHgmSWow5amDAwgGVfVHCDPB4YYStzD0Z6QPI/tTsEzPJg gn9XZl9q0JW7Wg3i9PYBrX5w4KCQkokjIcSfgeW5YmqOfEhGhBBpZV8xA7ilprIX v7ErhYsTamWwQW4J5xCUcDQMO2fjAs73dLLG4vkdNKG+rxZnvrsEcEbDYl3GUvTf Tihe9gHjgljiRH82eEFicdJ6Qeq0zyLWndP3MexP8AWvDltoYdEhE0HtV/6sutAo 2ZnCJCW8OY/L52BXTkuksCq9u2U2ffyy1o9et0UpwQq8FT3YaszQGB056sHSxc2k WMwMemTnu6ot =q6T0 -----END PGP SIGNATURE----- Wed Jul 7 00:40:17 UTC 2021 I: Checking whether the package is not for us Wed Jul 7 00:40:17 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Wed Jul 7 00:40:17 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Wed Jul 7 00:54:12 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 6 12:40:22 -12 2021 I: pbuilder-time-stamp: 1625618422 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [molmodel_3.0~svn842-2.dsc] I: copying [./molmodel_3.0~svn842.orig.tar.xz] I: copying [./molmodel_3.0~svn842-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Tld0NCh3/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 17 16:27:13 2020 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./molmodel_3.0~svn842-2.dsc dpkg-source: info: extracting molmodel in molmodel-3.0~svn842 dpkg-source: info: unpacking molmodel_3.0~svn842.orig.tar.xz dpkg-source: info: unpacking molmodel_3.0~svn842-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-failing-tests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28812/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28812' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/pbuilderrc_hCNj --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/b1 --logfile b1/build.log molmodel_3.0~svn842-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 5 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/28812/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libmmdb2-dev, libsimbody-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl4{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu67{a} libjsoncpp24{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmmdb2-0{a} libmmdb2-dev{a} libncurses6{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpthread-stubs0-dev{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsimbody-dev{a} libsimbody3.6{a} libsm-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} x11-common{a} x11proto-dev{a} x11proto-input-dev{a} x11proto-xext-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 72.1 MB of archives. After unpacking 309 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3 [320 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-1 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libglvnd0 arm64 1.3.2-1 [44.3 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libdrm-common all 2.4.104-1 [14.9 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libdrm2 arm64 2.4.104-1 [41.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libglapi-mesa arm64 20.3.4-1 [96.7 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libx11-xcb1 arm64 2:1.7.1-1 [203 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri2-0 arm64 1.14-3 [103 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri3-0 arm64 1.14-3 [102 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libxcb-glx0 arm64 1.14-3 [118 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libxcb-present0 arm64 1.14-3 [101 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libxcb-sync1 arm64 1.14-3 [105 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libxcb-xfixes0 arm64 1.14-3 [105 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libxdamage1 arm64 1:1.1.5-2 [15.7 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libxfixes3 arm64 1:5.0.3-2 [22.1 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libdrm-amdgpu1 arm64 2.4.104-1 [28.0 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libdrm-nouveau2 arm64 2.4.104-1 [26.1 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libdrm-radeon1 arm64 2.4.104-1 [29.3 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libsensors5 arm64 1:3.6.0-7 [51.2 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libvulkan1 arm64 1.2.162.0-1 [95.7 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libgl1-mesa-dri arm64 20.3.4-1 [6552 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libglx-mesa0 arm64 20.3.4-1 [186 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libglx0 arm64 1.3.2-1 [32.0 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libgl1 arm64 1.3.2-1 [91.4 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libxi6 arm64 2:1.7.10-1 [81.7 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 freeglut3 arm64 2.8.1-6 [119 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 x11proto-dev all 2020.1-1 [594 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libxcb1-dev arm64 1.14-3 [177 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libx11-dev arm64 2:1.7.1-1 [832 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libglx-dev arm64 1.3.2-1 [16.3 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libgl-dev arm64 1.3.2-1 [100 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libwayland-server0 arm64 1.18.0-2~exp1.1 [33.7 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 libgbm1 arm64 20.3.4-1 [72.4 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libwayland-client0 arm64 1.18.0-2~exp1.1 [26.5 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libegl-mesa0 arm64 20.3.4-1 [134 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libegl1 arm64 1.3.2-1 [34.4 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libegl-dev arm64 1.3.2-1 [19.6 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libgles1 arm64 1.3.2-1 [13.0 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libgles2 arm64 1.3.2-1 [18.4 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libgles-dev arm64 1.3.2-1 [50.3 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libopengl0 arm64 1.3.2-1 [32.4 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libopengl-dev arm64 1.3.2-1 [5872 B] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libglvnd-dev arm64 1.3.2-1 [13.9 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libgl1-mesa-dev arm64 20.3.4-1 [51.1 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libglu1-mesa arm64 9.0.1-1 [146 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libglu1-mesa-dev arm64 9.0.1-1 [186 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 x11proto-xext-dev all 2020.1-1 [3404 B] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libxext-dev arm64 2:1.3.3-1.1 [107 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 libice-dev arm64 2:1.0.10-1 [66.0 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 libsm-dev arm64 2:1.2.3-1 [37.4 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libxt-dev arm64 1:1.2.0-1 [406 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 freeglut3-dev arm64 2.8.1-6 [176 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-0 arm64 2.0.5-1 [315 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-dev arm64 2.0.5-1 [91.9 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 libxfixes-dev arm64 1:5.0.3-2 [24.3 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 x11proto-input-dev all 2020.1-1 [3412 B] Get: 134 http://deb.debian.org/debian bullseye/main arm64 libxi-dev arm64 2:1.7.10-1 [240 kB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 libxmu-dev arm64 2:1.1.2-2+b3 [65.5 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 libsimbody3.6 arm64 3.6.1+dfsg-7 [2721 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 libsimbody-dev arm64 3.6.1+dfsg-7 [2726 kB] Fetched 72.1 MB in 2s (31.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../005-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../006-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../010-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../013-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../019-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../020-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../021-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../022-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../023-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../024-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../025-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../026-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../027-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../028-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../029-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../030-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../031-libcurl4_7.74.0-1.3_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../032-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:arm64. Preparing to unpack .../033-libjsoncpp24_1.9.4-4_arm64.deb ... Unpacking libjsoncpp24:arm64 (1.9.4-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../034-librhash0_1.4.1-2_arm64.deb ... Unpacking librhash0:arm64 (1.4.1-2) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../035-libuv1_1.40.0-1_arm64.deb ... Unpacking libuv1:arm64 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../036-cmake_3.18.4-2_arm64.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../044-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../046-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../047-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../048-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../049-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libglvnd0:arm64. Preparing to unpack .../050-libglvnd0_1.3.2-1_arm64.deb ... Unpacking libglvnd0:arm64 (1.3.2-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../052-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../053-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../055-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../057-libx11-6_2%3a1.7.1-1_arm64.deb ... 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Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmmdb2-0:arm64 (2.0.5-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:arm64 (1.3.2-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up libopengl0:arm64 (1.3.2-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:arm64 (4.8.10-1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libuv1:arm64 (1.40.0-1) ... Setting up libgles2:arm64 (1.3.2-1) ... Setting up libx11-data (2:1.7.1-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libgles1:arm64 (1.3.2-1) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libmmdb2-dev (2.0.5-1) ... Setting up autopoint (0.21-4) ... Setting up libsensors5:arm64 (1:3.6.0-7) ... Setting up libglapi-mesa:arm64 (20.3.4-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libvulkan1:arm64 (1.2.162.0-1) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.0~svn842-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find OpenMM (missing: OpenMM_INCLUDE_DIR OpenMM_LIBRARY OpenMM_LIBRARIES) -- Could not find 'svnversion' executable; 'about' will be wrong. (Cygwin provides one on Windows.) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/molmodel-3.0~svn842/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/CMakeFiles" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/sharedTarget" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget/CMakeFiles/SimTKmolmodel.dir/depend.internal". Scanning dependencies of target SimTKmolmodel make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 1%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o [ 1%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c "/build/molmodel-3.0~svn842/src/About.cpp" [ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/AtomSubsystem.cpp" [ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. 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-fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/build/molmodel-3.0~svn842/src/BondGeometry.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/CompoundSystem.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/build/molmodel-3.0~svn842/src/Compound.cpp" [ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" [ 6%] Building CXX object 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sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/build/molmodel-3.0~svn842/src/Element.cpp" [ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/MolecularMechanicsSystem.cpp" [ 8%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c "/build/molmodel-3.0~svn842/src/PDBReader.cpp" [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c "/build/molmodel-3.0~svn842/src/Pdb.cpp" [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c "/build/molmodel-3.0~svn842/src/PeriodicVmdReporter.cpp" [ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/src/RiboseMobilizer.cpp" [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c "/build/molmodel-3.0~svn842/src/TinkerAmber99.cpp" [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o -c "/build/molmodel-3.0~svn842/src/VanderWallSphere.cpp" [ 12%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/src/VelocityRescalingThermostat.cpp" [ 13%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o -c "/build/molmodel-3.0~svn842/src/VmdConnection.cpp" [ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/CpuImplicitSolvent.cpp" [ 14%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/CpuObc.cpp" [ 15%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/ImplicitSolventParameters.cpp" [ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/ObcParameters.cpp" [ 16%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/SimTKOpenMMCommon.cpp" [ 17%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/SimTKOpenMMLog.cpp" [ 18%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/SimTKOpenMMUtilities.cpp" [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o -c "/build/molmodel-3.0~svn842/src/gbsa/cpuObcInterface.cpp" [ 19%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c "/build/molmodel-3.0~svn842/src/imd.cpp" [ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o -c "/build/molmodel-3.0~svn842/src/mol.cpp" [ 21%] Building C object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/cc -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -c "/build/molmodel-3.0~svn842/src/vmdsock.c" /build/molmodel-3.0~svn842/src/mol.cpp: In function 'void mol_DbGromacsRead(MolModel*, FILE*)': /build/molmodel-3.0~svn842/src/mol.cpp:1326:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1326 | sprintf (atom_name, " %s", s); | ^ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from /build/molmodel-3.0~svn842/src/mol.h:14, from /build/molmodel-3.0~svn842/src/mol.cpp:15: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Linking CXX shared library ../libSimTKmolmodel.so cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 -lmmdb2 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/sharedTarget" && /usr/bin/cmake -E cmake_symlink_library ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so.3.0 ../libSimTKmolmodel.so make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 21%] Built target SimTKmolmodel make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" --color= make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" --color= make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make 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"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" --color= make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" --color= make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" --color= make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleProtein.dir/depend.internal". 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Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". 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Scanning dependencies of target ExampleSimpleProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/build Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". [ 21%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleProtein.cpp" Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". Scanning dependencies of target ExampleFoldPolyalanine make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Scanning dependencies of target ExampleRigidProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/build [ 22%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" Scanning dependencies of target ExampleCreatePropane Scanning dependencies of target ExampleLoadPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/build Scanning dependencies of target ExampleAdenylateMobilitiesVMD make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 23%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o Scanning dependencies of target ExampleLoadPdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleRigidProtein.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build [ 24%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb.cpp" Scanning dependencies of target MolmodelInstallTestNoViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 25%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" [ 25%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesVMD.cpp" [ 25%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o [ 25%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb2.cpp" cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTestNoViz.cpp" [ 26%] Linking CXX executable ../ExampleLoadPdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 26%] Built target ExampleLoadPdb make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleRNA.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleSimpleRNA.dir/depend.internal". Scanning dependencies of target ExampleSimpleRNA make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 27%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleRNA.cpp" [ 28%] Linking CXX executable ../ExampleLoadPdb2 cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 29%] Linking CXX executable ../ExampleCreatePropane cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 29%] Built target ExampleLoadPdb2 make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Scanning dependencies of target ExampleTwoArgonAtoms make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 30%] Building CXX object examples/CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoArgonAtoms.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 30%] Built target ExampleCreatePropane make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleTwoEthanes.dir/depend.internal". Scanning dependencies of target ExampleTwoEthanes make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 31%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoEthanes.cpp" [ 32%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 32%] Built target ExampleAdenylateMobilitiesVMD make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". Scanning dependencies of target ExampleAdenylateMobilitiesViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 33%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesViz.cpp" [ 34%] Linking CXX executable ../ExampleSimpleProtein cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 35%] Linking CXX executable ../MolmodelInstallTestNoViz cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 35%] Built target ExampleSimpleProtein make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". Scanning dependencies of target MolmodelInstallTest make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 36%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" [ 36%] Linking CXX executable ../ExampleFoldPolyalanine cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 36%] Built target MolmodelInstallTestNoViz make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteSimtimePdb.dir/depend.internal". Scanning dependencies of target TestWriteSimtimePdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 37%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteSimtimePdb.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 37%] Built target ExampleFoldPolyalanine make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". [ 38%] Linking CXX executable ../ExampleRigidProtein cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestTorsionPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 39%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTorsionPartitioner.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 39%] Built target ExampleRigidProtein make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestTinkerAmber.dir/depend.internal". Scanning dependencies of target TestTinkerAmber make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 40%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTinkerAmber.cpp" [ 41%] Linking CXX executable ../ExampleTwoArgonAtoms cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 41%] Linking CXX executable ../ExampleTwoEthanes cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 41%] Built target ExampleTwoArgonAtoms make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestWriteDefaultPdb.dir/depend.internal". Scanning dependencies of target TestWriteDefaultPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteDefaultPdb.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Built target ExampleTwoEthanes make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestShortPdbLines.dir/depend.internal". Scanning dependencies of target TestShortPdbLines make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestShortPdbLines.cpp" [ 42%] Linking CXX executable ../ExampleSimpleRNA cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 42%] Built target ExampleSimpleRNA make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGetAtomName.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGetAtomName.dir/depend.internal". Scanning dependencies of target TestGetAtomName make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 43%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGetAtomName.cpp" [ 43%] Linking CXX executable ../TestTinkerAmber cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 43%] Built target TestTinkerAmber make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNoseHooverThermostat.dir/depend.internal". [ 44%] Linking CXX executable ../MolmodelInstallTest cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 Scanning dependencies of target TestNoseHooverThermostat make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 44%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNoseHooverThermostat.cpp" [ 44%] Linking CXX executable ../ExampleAdenylateMobilitiesViz cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu:" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Built target MolmodelInstallTest make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGbsa.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestGbsa.dir/depend.internal". Scanning dependencies of target TestGbsa make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGbsa.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Built target ExampleAdenylateMobilitiesViz make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend.internal". Scanning dependencies of target TestLoadVariantRnaAtomNames make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 44%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoadVariantRnaAtomNames.cpp" [ 45%] Linking CXX executable ../TestWriteSimtimePdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 46%] Linking CXX executable ../TestTorsionPartitioner cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 46%] Built target TestWriteSimtimePdb make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPositiveControl.dir/depend.internal". Scanning dependencies of target TestPositiveControl make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 47%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPositiveControl.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 47%] Built target TestTorsionPartitioner make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Scanning dependencies of target TestBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 47%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBodyIds.cpp" [ 47%] Linking CXX executable ../TestPositiveControl cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 47%] Built target TestPositiveControl make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestEthane.dir/depend.internal". Scanning dependencies of target TestEthane make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 48%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestEthane.cpp" [ 49%] Linking CXX executable ../TestShortPdbLines cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 49%] Built target TestShortPdbLines make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiopolymer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiopolymer.dir/depend.internal". Scanning dependencies of target TestBiopolymer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 50%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiopolymer.cpp" [ 51%] Linking CXX executable ../TestWriteDefaultPdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 51%] Built target TestWriteDefaultPdb make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProteinDihedrals.dir/depend.internal". [ 52%] Linking CXX executable ../TestGetAtomName cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestProteinDihedrals make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 52%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProteinDihedrals.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 52%] Built target TestGetAtomName make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestBiotypeSelfCode.dir/depend.internal". Scanning dependencies of target TestBiotypeSelfCode make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 53%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiotypeSelfCode.cpp" [ 54%] Linking CXX executable ../TestGbsa cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 55%] Linking CXX executable ../TestNoseHooverThermostat cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 55%] Built target TestGbsa make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". Scanning dependencies of target TestForeignBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 56%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestForeignBodyIds.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 56%] Built target TestNoseHooverThermostat make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" --color= [ 57%] Linking CXX executable ../TestLoadVariantRnaAtomNames cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestAtomTargetLocations.dir/depend.internal". Scanning dependencies of target TestAtomTargetLocations make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 58%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestAtomTargetLocations.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 58%] Built target TestLoadVariantRnaAtomNames make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSetTorsion.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSetTorsion.dir/depend.internal". Scanning dependencies of target TestSetTorsion make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 59%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSetTorsion.cpp" [ 60%] Linking CXX executable ../TestBodyIds cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 60%] Built target TestBodyIds make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". Scanning dependencies of target TestMethaneCartesian make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 61%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethaneCartesian.cpp" [ 62%] Linking CXX executable ../TestBiotypeSelfCode cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 62%] Linking CXX executable ../TestEthane cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 [ 62%] Built target TestBiotypeSelfCode /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMgSolvationEnergy.dir/depend.internal". Scanning dependencies of target TestMgSolvationEnergy make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 63%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMgSolvationEnergy.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 63%] Built target TestEthane make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend.internal". Scanning dependencies of target TestLoneAtomCoordinates make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 64%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoneAtomCoordinates.cpp" [ 65%] Linking CXX executable ../TestProteinDihedrals cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 65%] Built target TestProteinDihedrals make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" --color= [ 65%] Linking CXX executable ../TestBiopolymer cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestMethanol.dir/depend.internal". /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestMethanol make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 66%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethanol.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 66%] Built target TestBiopolymer make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNucleotide2.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestNucleotide2.dir/depend.internal". Scanning dependencies of target TestNucleotide2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 67%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNucleotide2.cpp" [ 68%] Linking CXX executable ../TestAtomTargetLocations cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 69%] Linking CXX executable ../TestForeignBodyIds cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 69%] Built target TestAtomTargetLocations make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". Scanning dependencies of target TestOxygenMolecule make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 69%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestOxygenMolecule.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 69%] Built target TestForeignBodyIds make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend.internal". Scanning dependencies of target TestVelocityRescalingThermostat make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 70%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestVelocityRescalingThermostat.cpp" [ 71%] Linking CXX executable ../TestSetTorsion cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 71%] Built target TestSetTorsion make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestCompoundTransforms.dir/depend.internal". Scanning dependencies of target TestCompoundTransforms make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 72%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestCompoundTransforms.cpp" [ 73%] Linking CXX executable ../TestMethaneCartesian cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 73%] Built target TestMethaneCartesian make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitionerDihedrals.dir/depend.internal". Scanning dependencies of target TestPartitionerDihedrals make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 74%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitionerDihedrals.cpp" [ 75%] Linking CXX executable ../TestMgSolvationEnergy cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 75%] Built target TestMgSolvationEnergy make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSerine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSerine.dir/depend.internal". Scanning dependencies of target TestSerine make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 76%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSerine.cpp" [ 76%] Linking CXX executable ../TestLoneAtomCoordinates cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 76%] Built target TestLoneAtomCoordinates make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestPartitioner.dir/depend.internal". Scanning dependencies of target TestPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 77%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitioner.cpp" [ 77%] Linking CXX executable ../TestMethanol cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 77%] Built target TestMethanol make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestProtein.dir/depend.internal". Scanning dependencies of target TestProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 78%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProtein.cpp" [ 79%] Linking CXX executable ../TestNucleotide2 cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 79%] Built target TestNucleotide2 make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRiboseMobilizer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRiboseMobilizer.dir/depend.internal". Scanning dependencies of target TestRiboseMobilizer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 80%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRiboseMobilizer.cpp" [ 80%] Linking CXX executable ../TestVelocityRescalingThermostat cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 80%] Built target TestVelocityRescalingThermostat make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestRna.dir/depend.internal". Scanning dependencies of target TestRna make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 80%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRna.cpp" [ 81%] Linking CXX executable ../TestOxygenMolecule cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 81%] Built target TestOxygenMolecule make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestFitMagnesiums.dir/depend.internal". Scanning dependencies of target TestFitMagnesiums make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 82%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestFitMagnesiums.cpp" [ 83%] Linking CXX executable ../TestCompoundTransforms cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 84%] Linking CXX executable ../TestPartitionerDihedrals cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 84%] Built target TestCompoundTransforms make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestDuMMForces.dir/depend.internal". Scanning dependencies of target TestDuMMForces make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 84%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestDuMMForces.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 84%] Built target TestPartitionerDihedrals make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSanityDuMM.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/CMakeFiles/TestSanityDuMM.dir/depend.internal". Scanning dependencies of target TestSanityDuMM make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 85%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSanityDuMM.cpp" [ 86%] Linking CXX executable ../TestSerine cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 86%] Built target TestSerine make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend.internal". Scanning dependencies of target RemoveMassCenterDriftWithOptimizer make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 86%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp" [ 87%] Linking CXX executable ../TestRiboseMobilizer cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 87%] Built target TestRiboseMobilizer make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" --color= [ 88%] Linking CXX executable ../TestProtein cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend.internal". /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestEthaneFromSimbody make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 89%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestEthaneFromSimbody.cpp" make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 89%] Built target TestProtein make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend.internal". Scanning dependencies of target TestSerineWithViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 90%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSerineWithViz.cpp" [ 90%] Linking CXX executable ../TestPartitioner cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 90%] Built target TestPartitioner make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend.internal". Scanning dependencies of target TestSimpleProtein make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 91%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSimpleProtein.cpp" [ 91%] Linking CXX executable ../TestSanityDuMM cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 91%] Built target TestSanityDuMM make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend.internal". Scanning dependencies of target TestWriteLargerPdb make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 91%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestWriteLargerPdb.cpp" [ 92%] Linking CXX executable ../TestRna cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 92%] Built target TestRna make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend.internal". Scanning dependencies of target RemoveMassCenterDrift make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 93%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDrift.cpp" [ 93%] Linking CXX executable ../TestFitMagnesiums cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 93%] Built target TestFitMagnesiums make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend.internal". Scanning dependencies of target TestSodiumWithViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 93%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSodiumWithViz.cpp" [ 94%] Linking CXX executable ../TestDuMMForces cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 94%] Linking CXX executable ../../TestSerineWithViz cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 94%] Built target TestDuMMForces /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 95%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 95%] Built target TestSerineWithViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 95%] Built target RemoveMassCenterDriftWithOptimizer [ 96%] Linking CXX executable ../../TestEthaneFromSimbody cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthaneFromSimbody.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -o ../../TestEthaneFromSimbody -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 96%] Built target TestEthaneFromSimbody [ 97%] Linking CXX executable ../../TestSimpleProtein cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 97%] Built target TestSimpleProtein [ 98%] Linking CXX executable ../../TestSodiumWithViz cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSodiumWithViz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -o ../../TestSodiumWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 98%] Built target TestSodiumWithViz [ 99%] Linking CXX executable ../../TestWriteLargerPdb cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [ 99%] Built target TestWriteLargerPdb [100%] Linking CXX executable ../../RemoveMassCenterDrift cd "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" ../../libSimTKmolmodel.so.3.0 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.6 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' [100%] Built target RemoveMassCenterDrift make[2]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/molmodel-3.0\~svn842/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/api/Molmodel/html -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/MolmodelAPI.html -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/Molmodel.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/SimTKmolmodel.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/AtomSubsystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Biotype.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Clonable.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Compound.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/CompoundModeler.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/CompoundSystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/DNA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/DuMMForceFieldSubsystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Element.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/GrinPointer.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Ions.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Ligands.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/MassCenterMotionRemover.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/MolecularMechanicsSystem.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/NA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/NoseHooverThermostat.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PDBReader.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Pdb.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PeriodicPdbWriter.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/PeriodicVmdReporter.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Protein.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/RNA.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/RiboseMobilizer.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Superpose.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VanDerWaalsForce.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VanderWallSphere.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VelocityRescalingThermostat.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VmdConnection.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/VoxelHash.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/Water.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/bondGeometry.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/common.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/include/molmodel/internal/units.h -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/doc/MolmodelUsersGuide.pdf -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/lib/libSimTKmolmodel.so.3.0 -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/lib/libSimTKmolmodel.so -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesVMD" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleAdenylateMobilitiesViz" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleCreatePropane" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleFoldPolyalanine" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2 -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleLoadPdb2" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleRigidProtein" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleProtein" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleSimpleRNA" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoArgonAtoms" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ExampleTwoEthanes" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTest" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz -- Set runtime path of "/build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/MolmodelInstallTestNoViz" to "" -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/1AKG.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/1AKG.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/1AKGtrim.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/1AKGtrim.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ThreeAdenylates.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/ThreeAdenylates.pdb -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/adenylates.vmd -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/bin/adenylates.vmd -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesViz.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleCreatePropane.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleFoldPolyalanine.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleLoadPdb2.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleRigidProtein.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleSimpleProtein.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleSimpleRNA.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleTwoArgonAtoms.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleTwoEthanes.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTest.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/MolmodelInstallTestNoViz.cpp -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/ExampleAdenylateMobilitiesVMD_Notes.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README_Makefile.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/README_VisualStudio.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/CMakeLists.txt -- Installing: /build/molmodel-3.0~svn842/debian/tmp/usr/examples/molmodel/src/Makefile make[1]: Leaving directory '/build/molmodel-3.0~svn842/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/molmodel-3.0~svn842' dh_install dh_install -plibsimtkmolmodel3.0 debian/tmp/usr/lib/libSimTKmolmodel.so.* usr/lib/aarch64-linux-gnu dh_install -plibsimtkmolmodel-dev debian/tmp/usr/lib/libSimTKmolmodel.so usr/lib/aarch64-linux-gnu rm -rf debian/tmp/usr/examples # not installing examples for now make[1]: Leaving directory '/build/molmodel-3.0~svn842' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0~svn842-2_arm64.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_arm64.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../molmodel_3.0~svn842-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28812 and its subdirectories I: Current time: Tue Jul 6 12:54:09 -12 2021 I: pbuilder-time-stamp: 1625619249 Wed Jul 7 00:54:12 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Wed Jul 7 00:54:12 UTC 2021 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Wed Jul 7 01:00:55 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Wed Jul 7 01:00:56 UTC 2021 I: molmodel_3.0~svn842-2_arm64.changes: Format: 1.8 Date: Wed, 17 Jun 2020 07:21:24 -0400 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel3.0 libsimtkmolmodel3.0-dbgsym Architecture: arm64 Version: 3.0~svn842-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file libsimtkmolmodel3.0 - C++ API for creating molecular models for SimTK Changes: molmodel (3.0~svn842-2) unstable; urgency=medium . * Adding 'Rules-Requires-Root: no'. * Bumping debhelper-compat. * Not installing examples for now. * Installing docs. Checksums-Sha1: e1ff95efe545dbaa9203f0247feaa78c0b8c56a3 1858500 libsimtkmolmodel-dev_3.0~svn842-2_arm64.deb 3f9366b6c472accd734d15c5029c9f06ca292367 9566308 libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_arm64.deb d058b559f74fea4bbee53bfc003f316e868b14fe 460660 libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb 08b27bd132addef50bbf425d28474a6e372b6bec 8484 molmodel_3.0~svn842-2_arm64.buildinfo Checksums-Sha256: 6099d6418c07091bc9c4e35a7c616d73f6dacbd0f8b551d01647c3bdb4300acb 1858500 libsimtkmolmodel-dev_3.0~svn842-2_arm64.deb 9e90f2c46034723b81af0fb6d6c83db70fce4e6c91fa7dab6ee06e6aa33ef535 9566308 libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_arm64.deb 9f04e9ee071ce5f3d2d6893b12037358d6686e0b58c9b3536e325c2c5ba7b601 460660 libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb 5a059e627d46546df9e75e42d75811fe0b4ccfdd677d9c3fa1ca1245c5667b80 8484 molmodel_3.0~svn842-2_arm64.buildinfo Files: eed22d66f260009fd4c64ae2275e85fe 1858500 libdevel optional libsimtkmolmodel-dev_3.0~svn842-2_arm64.deb 930958d2d73d3bc6d12fd0ccf2cf37d7 9566308 debug optional libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_arm64.deb a4716c0288eb2c3a3d7209ab681baa06 460660 libs optional libsimtkmolmodel3.0_3.0~svn842-2_arm64.deb 03550a92be16daea52baae9b5f160171 8484 libs optional molmodel_3.0~svn842-2_arm64.buildinfo Wed Jul 7 01:00:57 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/molmodel_3.0~svn842-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/molmodel_3.0~svn842-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/molmodel_3.0~svn842-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/b1/molmodel_3.0~svn842-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.rbpgXTzRUD/b2/molmodel_3.0~svn842-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.419s) 0.419s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.152s) 0.152s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 7 01:01:01 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 7 01:01:01 UTC 2021 I: molmodel from bullseye built successfully and reproducibly on arm64. Wed Jul 7 01:01:02 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 7 01:01:02 UTC 2021 I: Submitting 12K b1/molmodel_3.0~svn842-2_arm64.buildinfo.asc Wed Jul 7 01:01:03 UTC 2021 I: Submitting 12K b2/molmodel_3.0~svn842-2_arm64.buildinfo.asc Wed Jul 7 01:01:04 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 7 01:01:04 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 7 01:01:04 UTC 2021 I: Removing signed molmodel_3.0~svn842-2_arm64.buildinfo.asc files: removed './b1/molmodel_3.0~svn842-2_arm64.buildinfo.asc' removed './b2/molmodel_3.0~svn842-2_arm64.buildinfo.asc'