Sun Jul 25 04:32:49 UTC 2021 I: starting to build ngmlr/bullseye/arm64 on jenkins on '2021-07-25 04:32' Sun Jul 25 04:32:49 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/4/console.log Sun Jul 25 04:32:49 UTC 2021 I: Downloading source for bullseye/ngmlr=0.2.7+dfsg-4 --2021-07-25 04:32:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/n/ngmlr/ngmlr_0.2.7+dfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2119 (2.1K) Saving to: ‘ngmlr_0.2.7+dfsg-4.dsc’ 0K .. 100% 295M=0s 2021-07-25 04:32:50 (295 MB/s) - ‘ngmlr_0.2.7+dfsg-4.dsc’ saved [2119/2119] Sun Jul 25 04:32:50 UTC 2021 I: ngmlr_0.2.7+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ngmlr Binary: ngmlr Architecture: any Version: 0.2.7+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Pranav Ballaney Homepage: https://github.com/philres/ngmlr Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/ngmlr Vcs-Git: https://salsa.debian.org/med-team/ngmlr.git Testsuite: autopkgtest Testsuite-Triggers: bedtools, samtools Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev Package-List: ngmlr deb science optional arch=any Checksums-Sha1: 198e343fcb772ace326757696d6f70238e09b8b8 667520 ngmlr_0.2.7+dfsg.orig.tar.gz b58dd933530661ced28f851184d787f075630a28 6468 ngmlr_0.2.7+dfsg-4.debian.tar.xz Checksums-Sha256: fad2842fd0fb992fd86a44c258c97ac3cae62f3ad1480e834df21b416ae5cbf3 667520 ngmlr_0.2.7+dfsg.orig.tar.gz 9845c123026ce4491b80efc95d6cc8fae7b63dd1ae1f2bfa992ea4ca4f453007 6468 ngmlr_0.2.7+dfsg-4.debian.tar.xz Files: 685874d736f1f967b49f906d89b2d2cd 667520 ngmlr_0.2.7+dfsg.orig.tar.gz 17f56443b267f397df88a0b4781f20b8 6468 ngmlr_0.2.7+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/M2MkUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGJnBAAiIZYeuft3ur/kOtW7FmYKZ/RbrA+ OfpzbL1fZHmqgVIlbJPBHcH4pJtsCYtDrWmU9A1sXJ8RdBiX8EPQzf7P+6CZSLwV KFrdlQ0U3w30o1TdnBcwmDdLaKfs9B8gahJ/yQ/IbLX5zbTesM60OqkB7Yw334p3 g1oSUFUpvfo7GUsphF76o0MWRiUrQB3LIB3bpoYAk3pAQnKaRFlaiYf0ZJJ4kXrK EgQaY1wk7j9LMuG3+QAvqj7GgK3gqIlL6oC6JOK4ytooKIXHwP9312qhBV1sx4S0 u3yM0z8tjkEaM0QWPfciF9yW9GXKiSEo5Bhb66qUo7ChMvOx9i8PMtOwL/J4XzW4 gG/upCK/byABSU7g0X+3AJjbeACeDJ2CPVc7wg8tqwBEXR87F+Op9D+4SGvhpVph 6XiOpy2S3KlMKBVtm2qwHc1KGjLGDqnYYUPozlReu22+pyqAT1IydYQA07Wq8x9E 41BJDtdY56/L4DKLZ6fYibr+1icG7oJi2R1VyPLsDg4ZW5Hd85C4yjeD7WXtuSan MFAa90ldjo3tRf5v3Cw+sU16RvU5PkKislMLagrmyRf8mkPSaj+OJZGvqvaR46BD 3fcdNnsTEhEM3n7HsAvnhJAJbvDBX9tRsJYnFpwsFDsH9HKF4Qj0ZelP+m5FohCY JyvNxNpo5OEopfo= =6aNa -----END PGP SIGNATURE----- Sun Jul 25 04:32:50 UTC 2021 I: Checking whether the package is not for us Sun Jul 25 04:32:50 UTC 2021 I: Starting 1st build on remote node codethink13-arm64.debian.net. Sun Jul 25 04:32:50 UTC 2021 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Sun Jul 25 04:34:46 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 26 22:55:56 -12 2022 I: pbuilder-time-stamp: 1661597756 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngmlr_0.2.7+dfsg-4.dsc] I: copying [./ngmlr_0.2.7+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.OOBJvRNV/trustedkeys.kbx': General error gpgv: Signature made Sun Dec 6 01:12:41 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ngmlr_0.2.7+dfsg-4.dsc dpkg-source: info: extracting ngmlr in ngmlr-0.2.7+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying fix-type-incompatibilities.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32089/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32089' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/pbuilderrc_Og6q --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/b1 --logfile b1/build.log ngmlr_0.2.7+dfsg-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 25 03:49 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/32089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libssw-dev{a} libssw0{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 31.9 MB of archives. After unpacking 119 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libsimde-dev all 0.7.2-4 [259 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libssw0 arm64 1.1-13 [18.5 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libssw-dev arm64 1.1-13 [21.9 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libtclap-dev arm64 1.2.3-1 [143 kB] Fetched 31.9 MB in 1s (24.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../30-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../32-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... 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Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../50-libcurl3-gnutls_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... 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Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:arm64 (1.40.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libtclap-dev (1.2.3-1) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up liblzma-dev:arm64 (5.2.5-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:arm64 (1.4.1-2) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libdeflate-dev:arm64 (1.7-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libssw0:arm64 (1.1-13) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libssw-dev:arm64 (1.1-13) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2+b1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:arm64 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:arm64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ngmlr-0.2.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+dfsg-4_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-0.2.7+dfsg -B/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+dfsg /build/ngmlr-0.2.7+dfsg/src /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color= make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ngmlr-0.2.7+dfsg /build/ngmlr-0.2.7+dfsg/src /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color= Dependee "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/depend.internal". Dependee "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/depend.internal". Scanning dependencies of target recompile_always make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && touch /build/ngmlr-0.2.7+dfsg/src/main.cpp Dependee "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/depend.internal". Dependee "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/depend.internal". make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target recompile_always Scanning dependencies of target ngmlr make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o [ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o [ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ArgParser.cpp cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentMatrix.cpp cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentMatrixFast.cpp [ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/CS.cpp [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ConvexAlignFast.cpp [ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ConvexAlign.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/LinearRegression.cpp [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/Logging.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/MappedRead.cpp cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/NGM.cpp /build/ngmlr-0.2.7+dfsg/src/main.cpp:56:146: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ In file included from /build/ngmlr-0.2.7+dfsg/src/Log.h:8, from /build/ngmlr-0.2.7+dfsg/src/NGM.h:11, from /build/ngmlr-0.2.7+dfsg/src/main.cpp:5: /build/ngmlr-0.2.7+dfsg/src/main.cpp:56:101: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ /build/ngmlr-0.2.7+dfsg/src/ILog.h:44:56: note: in definition of macro ‘Message’ 44 | #define Message(s, ...) _Message(0, module_name, s , ##__VA_ARGS__) | ^~~~~~~~~~~ /build/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘void __Log::LogToConsole(bool, int, const char*, const char*, ...)’: /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:100:2: warning: second parameter of ‘va_start’ not last named argument [-Wvarargs] 100 | va_start(args, count); | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/NGMTask.cpp /build/ngmlr-0.2.7+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:125:27: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 125 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:125:22: note: directive argument in the range [-2147483647, 2147483647] 125 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /build/ngmlr-0.2.7+dfsg/src/Logging.cpp:7: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/SamParser.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/ScoreBuffer.cpp [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/unix.cpp /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ngmlr-0.2.7+dfsg/src/OutputReadBuffer.cpp:17:3: note: in C++11 destructors default to ‘noexcept’ [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/ngmlr-0.2.7+dfsg/src/../lib -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/ngmlr-0.2.7+dfsg/src/unix_threads.cpp [100%] Linking CXX executable ../../bin/ngmlr-0.2.7/ngmlr cd /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/ngmlr-0.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o ../../bin/ngmlr-0.2.7/ngmlr -lz -lpthread -lssw make[3]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' [100%] Built target ngmlr make[2]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/ngmlr-0.2.7\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/ngmlr-0.2.7+dfsg -B/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/ngmlr-0.2.7+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/ngmlr-0.2.7+dfsg/obj-aarch64-linux-gnu' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+dfsg-4_arm64.deb'. dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ngmlr_0.2.7+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32089 and its subdirectories I: Current time: Fri Aug 26 22:57:43 -12 2022 I: pbuilder-time-stamp: 1661597863 Sun Jul 25 04:34:46 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Sun Jul 25 04:34:46 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Sun Jul 25 04:36:47 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Sun Jul 25 04:36:48 UTC 2021 I: ngmlr_0.2.7+dfsg-4_arm64.changes: Format: 1.8 Date: Sun, 06 Dec 2020 18:38:52 +0530 Source: ngmlr Binary: ngmlr ngmlr-dbgsym Architecture: arm64 Version: 0.2.7+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: ngmlr - CoNvex Gap-cost alignMents for Long Reads Changes: ngmlr (0.2.7+dfsg-4) unstable; urgency=medium . * Update Build-Deps * Attempt using simde to make portable across other arches * Add simde flags * Arch:any * Fix va_list incompatibilities Checksums-Sha1: 982e847b26de2206ac1b0b4a6e7197333d28428d 1284536 ngmlr-dbgsym_0.2.7+dfsg-4_arm64.deb 42738112488fc9e6e925db9c736fd616d0da89eb 5935 ngmlr_0.2.7+dfsg-4_arm64.buildinfo 8ff95248bfd8c282b29b35101ec4a640a457d1a9 662632 ngmlr_0.2.7+dfsg-4_arm64.deb Checksums-Sha256: 43ee41a4d2fdf85f2b576da64f2957020ed0a5743350b05fb1ebfc8354a65b0a 1284536 ngmlr-dbgsym_0.2.7+dfsg-4_arm64.deb 8ea1ef9a831d1e305e8133daead5388eb52eab18b5fe40159be5f90d95984883 5935 ngmlr_0.2.7+dfsg-4_arm64.buildinfo 09e44b562c8d81291acbb5977dccae9c14251c9f1653562b97561934b2cbd7ad 662632 ngmlr_0.2.7+dfsg-4_arm64.deb Files: ab6ac5c6228c1ba8cd660e8510552f4a 1284536 debug optional ngmlr-dbgsym_0.2.7+dfsg-4_arm64.deb 981382f32fed2e0b5f89012b175e7722 5935 science optional ngmlr_0.2.7+dfsg-4_arm64.buildinfo 02bd086a2e7fbb0757d4b5fa4321fb33 662632 science optional ngmlr_0.2.7+dfsg-4_arm64.deb Sun Jul 25 04:36:49 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/ngmlr_0.2.7+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/ngmlr_0.2.7+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/ngmlr_0.2.7+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/b1/ngmlr_0.2.7+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.JXnSgE94ko/b2/ngmlr_0.2.7+dfsg-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.251s) 0.251s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Jul 25 04:36:51 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 25 04:36:51 UTC 2021 I: ngmlr from bullseye built successfully and reproducibly on arm64. Sun Jul 25 04:36:52 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Jul 25 04:36:52 UTC 2021 I: Submitting 8.0K b1/ngmlr_0.2.7+dfsg-4_arm64.buildinfo.asc Sun Jul 25 04:36:52 UTC 2021 I: Submitting 8.0K b2/ngmlr_0.2.7+dfsg-4_arm64.buildinfo.asc Sun Jul 25 04:36:53 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 25 04:36:53 UTC 2021 I: Done submitting .buildinfo files. Sun Jul 25 04:36:53 UTC 2021 I: Removing signed ngmlr_0.2.7+dfsg-4_arm64.buildinfo.asc files: removed './b1/ngmlr_0.2.7+dfsg-4_arm64.buildinfo.asc' removed './b2/ngmlr_0.2.7+dfsg-4_arm64.buildinfo.asc'