Wed Aug 11 22:48:40 UTC 2021 I: starting to build parasail/bullseye/arm64 on jenkins on '2021-08-11 22:48'
Wed Aug 11 22:48:40 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/1898/console.log
Wed Aug 11 22:48:40 UTC 2021 I: Downloading source for bullseye/parasail=2.4.3+dfsg-2
--2021-08-11 22:48:40-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/parasail/parasail_2.4.3+dfsg-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2159 (2.1K)
Saving to: ‘parasail_2.4.3+dfsg-2.dsc’
0K .. 100% 174M=0s
2021-08-11 22:48:40 (174 MB/s) - ‘parasail_2.4.3+dfsg-2.dsc’ saved [2159/2159]
Wed Aug 11 22:48:40 UTC 2021 I: parasail_2.4.3+dfsg-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: parasail
Binary: libparasail-dev, libparasail3, parasail
Architecture: any
Version: 2.4.3+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <npatra974@gmail.com>
Homepage: https://github.com/jeffdaily/parasail
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/parasail
Vcs-Git: https://salsa.debian.org/med-team/parasail.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13), libhts-dev, libsimde-dev
Package-List:
libparasail-dev deb libdevel optional arch=any
libparasail3 deb libs optional arch=any
parasail deb libs optional arch=any
Checksums-Sha1:
1a745771840b6a8ae99de88ad3a2afcb06017d76 1029780 parasail_2.4.3+dfsg.orig.tar.xz
c4ec646db9333c8e1423e75dd719854fc56553ec 43900 parasail_2.4.3+dfsg-2.debian.tar.xz
Checksums-Sha256:
702d46c777a30b10c18a16011859273333213ac74795fe70a9ae8466a274c8c1 1029780 parasail_2.4.3+dfsg.orig.tar.xz
1e1a6a1d042fb1e2b0b181b9c8769cd8f90ef9f562c1a7bd0a159a9f58a7ea2f 43900 parasail_2.4.3+dfsg-2.debian.tar.xz
Files:
486942340b57d0fb4df3e9bf0aa8ac53 1029780 parasail_2.4.3+dfsg.orig.tar.xz
5197b12c10d1ee49bb646ee30a877bb0 43900 parasail_2.4.3+dfsg-2.debian.tar.xz
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Wed Aug 11 22:48:40 UTC 2021 I: Checking whether the package is not for us
Wed Aug 11 22:48:40 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net.
Wed Aug 11 22:48:40 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net.
Wed Aug 11 22:51:48 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Sep 13 17:11:44 -12 2022
I: pbuilder-time-stamp: 1663132304
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [parasail_2.4.3+dfsg-2.dsc]
I: copying [./parasail_2.4.3+dfsg.orig.tar.xz]
I: copying [./parasail_2.4.3+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.8o1Ix8L1/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 27 04:32:01 2021 -12
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parasail_2.4.3+dfsg-2.dsc
dpkg-source: info: extracting parasail in parasail-2.4.3+dfsg
dpkg-source: info: unpacking parasail_2.4.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking parasail_2.4.3+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Use-system-libs.patch
dpkg-source: info: applying nonx86
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/15114/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
DISTRIBUTION=''
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='15114'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/pbuilderrc_YDp4 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/b1 --logfile b1/build.log parasail_2.4.3+dfsg-2.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink9-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux
I: ls -l /bin
total 5252
-rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 39832 Sep 22 2020 cat
-rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 64528 Sep 22 2020 chown
-rwxr-xr-x 1 root root 138896 Sep 22 2020 cp
-rwxr-xr-x 1 root root 129544 Dec 10 2020 dash
-rwxr-xr-x 1 root root 101384 Sep 22 2020 date
-rwxr-xr-x 1 root root 80984 Sep 22 2020 dd
-rwxr-xr-x 1 root root 89824 Sep 22 2020 df
-rwxr-xr-x 1 root root 143088 Sep 22 2020 dir
-rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 35632 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 31512 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt
-rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount
-rwxr-xr-x 1 root root 178400 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe
-rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip
-rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 68720 Sep 22 2020 ln
-rwxr-xr-x 1 root root 52720 Feb 7 2020 login
-rwxr-xr-x 1 root root 143088 Sep 22 2020 ls
-rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk
-rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 51368 Jul 28 2021 more
-rwsr-xr-x 1 root root 51360 Jul 28 2021 mount
-rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint
-rwxr-xr-x 1 root root 134808 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash
-rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 68592 Sep 22 2020 rm
-rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 114016 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Sep 12 03:47 sh -> dash
-rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 72640 Sep 22 2020 stty
-rwsr-xr-x 1 root root 67776 Jul 28 2021 su
-rwxr-xr-x 1 root root 35672 Sep 22 2020 sync
-rwxr-xr-x 1 root root 535768 Feb 16 2021 tar
-rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 89120 Sep 22 2020 touch
-rwxr-xr-x 1 root root 31512 Sep 22 2020 true
-rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server
-rwsr-xr-x 1 root root 30880 Jul 28 2021 umount
-rwxr-xr-x 1 root root 35640 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress
-rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 2021 zless
-rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 2021 znew
I: user script /srv/workspace/pbuilder/15114/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libhts-dev, libsimde-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libhts-dev; however:
Package libhts-dev is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget
0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.6 MB of archives. After unpacking 83.9 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB]
Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB]
Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB]
Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB]
Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB]
Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB]
Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB]
Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB]
Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB]
Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB]
Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB]
Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB]
Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB]
Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB]
Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB]
Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB]
Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB]
Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB]
Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB]
Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB]
Get: 32 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB]
Get: 33 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB]
Get: 34 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB]
Get: 35 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB]
Get: 36 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB]
Get: 37 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB]
Get: 38 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 39 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB]
Get: 40 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB]
Get: 41 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB]
Get: 42 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB]
Get: 43 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB]
Get: 44 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB]
Get: 45 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB]
Get: 46 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB]
Get: 47 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB]
Get: 48 http://deb.debian.org/debian bullseye/main arm64 libsimde-dev all 0.7.2-4 [259 kB]
Fetched 24.6 MB in 1s (48.9 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ...
Unpacking bsdextrautils (2.36.1-8) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ...
Unpacking groff-base (1.22.4-6) ...
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update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up debhelper (13.3.4) ...
Processing triggers for libc-bin (2.31-13) ...
Reading package lists...
Building dependency tree...
Reading state information...
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Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/parasail-2.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../parasail_2.4.3+dfsg-2_source.changes
dpkg-buildpackage: info: source package parasail
dpkg-buildpackage: info: source version 2.4.3+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'.
libtoolize: copying file 'build-aux/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:115: installing 'build-aux/compile'
configure.ac:74: installing 'build-aux/config.guess'
configure.ac:74: installing 'build-aux/config.sub'
configure.ac:66: installing 'build-aux/install-sh'
configure.ac:66: installing 'build-aux/missing'
Makefile.am: installing 'build-aux/depcomp'
parallel-tests: installing 'build-aux/test-driver'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
dh_auto_configure -- \
--enable-shared \
--disable-static
./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-shared --disable-static
checking whether make supports nested variables... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... aarch64-unknown-linux-gnu
checking host system type... aarch64-unknown-linux-gnu
configure:
configure: C compiler
configure:
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for gcc option to accept ISO C99... none needed
checking for C compiler vendor... gnu
checking for a sed that does not truncate output... /bin/sed
checking for C compiler version... 10.2.1
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking for unistd.h... (cached) yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for C/C++ restrict keyword... __restrict
checking size of int... 4
checking for struct __stat64... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking for size_t... yes
checking for OpenMP flag of C compiler... -fopenmp
checking for SSE2 support... no
checking for SSE2 _mm_set1_epi64x... no
checking for SSE2 _mm_set_epi64x... no
checking for SSE4.1 support... no
checking for SSE4.1 _mm_insert_epi64... no
checking for SSE4.1 _mm_extract_epi64... no
checking for AVX2 support... no
checking for AVX2 _mm256_set1_epi64x... no
checking for AVX2 _mm256_set_epi64x... no
checking for AVX2 _mm256_insert_epi64... no
checking for AVX2 _mm256_insert_epi32... no
checking for AVX2 _mm256_insert_epi16... no
checking for AVX2 _mm256_insert_epi8... no
checking for AVX2 _mm256_extract_epi64... no
checking for AVX2 _mm256_extract_epi32... no
checking for AVX2 _mm256_extract_epi16... no
checking for AVX2 _mm256_extract_epi8... no
checking for AVX512F support... no
checking for AVX512BW support... no
checking for AVX512VBMI support... no
checking for xgetbv... no
checking for AltiVec support... no
checking for ARM NEON support... no
checking whether C compiler accepts -fopenmp-simd... yes
checking for _aligned_malloc... no
checking for aligned_alloc... yes
checking for filelength... no
checking for memalign... yes
checking for memset... yes
checking for poll... yes
checking for posix_memalign... yes
checking for getopt... yes
checking for SetUnhandledExceptionFilter... no
checking for _fstat64... no
checking for _stat64... no
checking for int64_t literal suffix... unknown
checking for GetSystemTimeAsFileTime... no
checking for clock_get_time... no
checking for library containing clock_gettime... none required
checking for clock_gettime CLOCK_MONOTONIC... no
checking for clock_gettime CLOCK_REALTIME... no
checking for library containing sqrt... -lm
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gzopen... -lz
checking for grep that handles long lines and -e... (cached) /bin/grep
checking whether C compiler supports visibility flag... -fvisibility=hidden
configure:
configure: C++ compiler
configure:
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for C++ compiler vendor... gnu
checking for C++ compiler version... 10.2.1
checking for OpenMP flag of C++ compiler... -fopenmp
checking for variadic macros... yes
configure:
configure: Libtool setup
configure:
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking our pkgconfig libname... parasail-1
checking our pkgconfig version... 2.4.3
checking our pkgconfig_libdir... ${libdir}/pkgconfig
expanded our pkgconfig_libdir... /usr/lib/aarch64-linux-gnu/pkgconfig
checking our pkgconfig_libfile... parasail-1.pc
checking our package / suffix... Pairwise Sequence Alignment Library /
checking our pkgconfig description... Pairwise Sequence Alignment Library
checking our pkgconfig requires...
checking our pkgconfig ext libs... -lparasail
checking our pkgconfig cppflags...
checking our pkgconfig ldflags...
noninstalled pkgconfig -L /build/parasail-2.4.3+dfsg/src/.libs
noninstalled pkgconfig -I /build/parasail-2.4.3+dfsg/.
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing parasail-1.pc commands
config.status: creating parasail-1.pc.in
config.status: creating parasail-1.pc
config.status: creating parasail-1-uninstalled.pc
config.status: creating parasail-1-uninstalled.sh
-=-=-=-=-=-=-=-=-=-= Configuration Complete =-=-=-=-=-=-=-=-=-=-=-
Configuration summary :
parasail version : .................... 2.4.3
Host CPU : ............................ aarch64
Host Vendor : ......................... unknown
Host OS : ............................. linux-gnu
Toolchain :
CC : .................................. gcc (gnu, 10.2.1)
CXX : ................................. g++ (gnu, 10.2.1)
Flags :
CFLAGS : .............................. -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic
CXXFLAGS : ............................ -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security
CPPFLAGS : ............................ -Wdate-time -D_FORTIFY_SOURCE=2
LDFLAGS : ............................. -Wl,-z,relro -Wl,-z,now -Wl,--as-needed
LIBS : ................................
Intrinsics :
SSE2 : ................................ auto (no)
SSE2_CFLAGS : ......................... not supported
SSE4.1 : .............................. auto (no)
SSE41_CFLAGS : ........................ not supported
AVX2 : ................................ auto (no)
AVX2_CFLAGS : ......................... not supported
AVX512 : .............................. auto (no)
AVX512F_CFLAGS : ...................... not supported
AVX512BW_CFLAGS : ..................... not supported
AVX512VBMI_CFLAGS : ................... not supported
Altivec : ............................. auto (no)
ALTIVEC_CFLAGS : ...................... not supported
ARM NEON : ............................ auto (no)
NEON_CFLAGS : ......................... not supported
EXTRA_NEON_CFLAGS : ................... -fopenmp-simd -DSIMDE_ENABLE_OPENMP
Dependencies :
OPENMP_CFLAGS : ....................... -fopenmp
OPENMP_CXXFLAGS : ..................... -fopenmp
CLOCK_LIBS : ..........................
MATH_LIBS : ........................... -lm
Z_CFLAGS : ............................
Z_LIBS : .............................. -lz
Installation directories :
Program directory : ................... /usr/bin
Library directory : ................... /usr/lib/aarch64-linux-gnu
Include directory : ................... /usr/include
Pkgconfig directory : ................. /usr/lib/aarch64-linux-gnu/pkgconfig
Compiling some other packages against parasail may require
the addition of '/usr/lib/aarch64-linux-gnu/pkgconfig' to the
PKG_CONFIG_PATH environment variable.
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
dh_auto_build
make -j8
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
make all-am
make[2]: Entering directory '/build/parasail-2.4.3+dfsg'
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o apps/parasail_stats.o apps/parasail_stats.c
g++ -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o apps/parasail_aligner-parasail_aligner.o `test -f 'apps/parasail_aligner.cpp' || echo './'`apps/parasail_aligner.cpp
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/getMemorySize.o contrib/getMemorySize.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cigar.lo `test -f 'src/cigar.c' || echo './'`src/cigar.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-cpuid_arm.lo `test -f 'src/cpuid_arm.c' || echo './'`src/cpuid_arm.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-function_lookup.lo `test -f 'src/function_lookup.c' || echo './'`src/function_lookup.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-io.lo `test -f 'src/io.c' || echo './'`src/io.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-isastubs.lo `test -f 'src/isastubs.c' || echo './'`src/isastubs.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-matrix_lookup.lo `test -f 'src/matrix_lookup.c' || echo './'`src/matrix_lookup.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cigar.c -fPIC -DPIC -o src/.libs/libparasail_la-cigar.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/function_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-function_lookup.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/cpuid_arm.c -fPIC -DPIC -o src/.libs/libparasail_la-cpuid_arm.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/isastubs.c -fPIC -DPIC -o src/.libs/libparasail_la-isastubs.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/io.c -fPIC -DPIC -o src/.libs/libparasail_la-io.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/matrix_lookup.c -fPIC -DPIC -o src/.libs/libparasail_la-matrix_lookup.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-memory.lo `test -f 'src/memory.c' || echo './'`src/memory.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/memory.c -fPIC -DPIC -o src/.libs/libparasail_la-memory.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-parser.lo `test -f 'src/parser.c' || echo './'`src/parser.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/parser.c -fPIC -DPIC -o src/.libs/libparasail_la-parser.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-pssw.lo `test -f 'src/pssw.c' || echo './'`src/pssw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/pssw.c -fPIC -DPIC -o src/.libs/libparasail_la-pssw.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-time.lo `test -f 'src/time.c' || echo './'`src/time.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/time.c -fPIC -DPIC -o src/.libs/libparasail_la-time.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-nw_dispatch.lo `test -f 'src/nw_dispatch.c' || echo './'`src/nw_dispatch.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dispatch.lo `test -f 'src/sg_dispatch.c' || echo './'`src/sg_dispatch.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sw_dispatch.lo `test -f 'src/sw_dispatch.c' || echo './'`src/sw_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-nw_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_dispatch.lo `test -f 'src/sg_qb_dispatch.c' || echo './'`src/sg_qb_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dispatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sw_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_dispatch.lo `test -f 'src/sg_qe_dispatch.c' || echo './'`src/sg_qe_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_dispatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qx_dispatch.lo `test -f 'src/sg_qx_dispatch.c' || echo './'`src/sg_qx_dispatch.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_db_dispatch.lo `test -f 'src/sg_db_dispatch.c' || echo './'`src/sg_db_dispatch.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_de_dispatch.lo `test -f 'src/sg_de_dispatch.c' || echo './'`src/sg_de_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qx_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qx_dispatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_db_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_dx_dispatch.lo `test -f 'src/sg_dx_dispatch.c' || echo './'`src/sg_dx_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_de_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qb_de_dispatch.lo `test -f 'src/sg_qb_de_dispatch.c' || echo './'`src/sg_qb_de_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qb_de_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qb_de_dispatch.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_dx_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_dx_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-sg_qe_db_dispatch.lo `test -f 'src/sg_qe_db_dispatch.c' || echo './'`src/sg_qe_db_dispatch.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_qe_db_dispatch.c -fPIC -DPIC -o src/.libs/libparasail_la-sg_qe_db_dispatch.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-dispatch_profile.lo `test -f 'src/dispatch_profile.c' || echo './'`src/dispatch_profile.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/dispatch_profile.c -fPIC -DPIC -o src/.libs/libparasail_la-dispatch_profile.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-satcheck.lo `test -f 'src/satcheck.c' || echo './'`src/satcheck.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-striped_unwind.lo `test -f 'src/striped_unwind.c' || echo './'`src/striped_unwind.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/striped_unwind.c -fPIC -DPIC -o src/.libs/libparasail_la-striped_unwind.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/satcheck.c -fPIC -DPIC -o src/.libs/libparasail_la-satcheck.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_la-traceback.lo `test -f 'src/traceback.c' || echo './'`src/traceback.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/traceback.c -fPIC -DPIC -o src/.libs/libparasail_la-traceback.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_banded.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_stats.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_stats.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_stats.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace.lo `test -f 'src/nw_trace.c' || echo './'`src/nw_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace.lo `test -f 'src/sg_trace.c' || echo './'`src/sg_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace.lo `test -f 'src/sw_trace.c' || echo './'`src/sw_trace.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-nw_trace_scan.lo `test -f 'src/nw_trace_scan.c' || echo './'`src/nw_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-nw_trace_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sg_trace_scan.lo `test -f 'src/sg_trace_scan.c' || echo './'`src/sg_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sg_trace_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_la-sw_trace_scan.lo `test -f 'src/sw_trace_scan.c' || echo './'`src/sw_trace_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_trace_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_la-sw_trace_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_banded.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-nw_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_table_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw.lo `test -f 'src/nw.c' || echo './'`src/nw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sg_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg.lo `test -f 'src/sg.c' || echo './'`src/sg.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_TABLE=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_table_la-sw_stats_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw.lo `test -f 'src/sw.c' || echo './'`src/sw.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_scan.lo `test -f 'src/nw_scan.c' || echo './'`src/nw_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_scan.lo `test -f 'src/sg_scan.c' || echo './'`src/sg_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_scan.lo `test -f 'src/sw_scan.c' || echo './'`src/sw_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_banded.lo `test -f 'src/nw_banded.c' || echo './'`src/nw_banded.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_banded.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_banded.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats.lo `test -f 'src/nw_stats.c' || echo './'`src/nw_stats.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats.lo `test -f 'src/sg_stats.c' || echo './'`src/sg_stats.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats.lo `test -f 'src/sw_stats.c' || echo './'`src/sw_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-nw_stats_scan.lo `test -f 'src/nw_stats_scan.c' || echo './'`src/nw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/nw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sg_stats_scan.lo `test -f 'src/sg_stats_scan.c' || echo './'`src/sg_stats_scan.c
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o src/libparasail_novec_rowcol_la-sw_stats_scan.lo `test -f 'src/sw_stats_scan.c' || echo './'`src/sw_stats_scan.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sg_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -DPARASAIL_ROWCOL=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c src/sw_stats_scan.c -fPIC -DPIC -o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o
/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o contrib/sais-lite-lcp/sais.lo contrib/sais-lite-lcp/sais.c
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o libparasail_novec.la src/libparasail_novec_la-nw.lo src/libparasail_novec_la-sg.lo src/libparasail_novec_la-sw.lo src/libparasail_novec_la-nw_scan.lo src/libparasail_novec_la-sg_scan.lo src/libparasail_novec_la-sw_scan.lo src/libparasail_novec_la-nw_banded.lo src/libparasail_novec_la-nw_stats.lo src/libparasail_novec_la-sg_stats.lo src/libparasail_novec_la-sw_stats.lo src/libparasail_novec_la-nw_stats_scan.lo src/libparasail_novec_la-sg_stats_scan.lo src/libparasail_novec_la-sw_stats_scan.lo src/libparasail_novec_la-nw_trace.lo src/libparasail_novec_la-sg_trace.lo src/libparasail_novec_la-sw_trace.lo src/libparasail_novec_la-nw_trace_scan.lo src/libparasail_novec_la-sg_trace_scan.lo src/libparasail_novec_la-sw_trace_scan.lo
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c contrib/sais-lite-lcp/sais.c -fPIC -DPIC -o contrib/sais-lite-lcp/.libs/sais.o
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o libparasail_novec_table.la src/libparasail_novec_table_la-nw.lo src/libparasail_novec_table_la-sg.lo src/libparasail_novec_table_la-sw.lo src/libparasail_novec_table_la-nw_scan.lo src/libparasail_novec_table_la-sg_scan.lo src/libparasail_novec_table_la-sw_scan.lo src/libparasail_novec_table_la-nw_banded.lo src/libparasail_novec_table_la-nw_stats.lo src/libparasail_novec_table_la-sg_stats.lo src/libparasail_novec_table_la-sw_stats.lo src/libparasail_novec_table_la-nw_stats_scan.lo src/libparasail_novec_table_la-sg_stats_scan.lo src/libparasail_novec_table_la-sw_stats_scan.lo
libtool: link: ar cr .libs/libparasail_novec.a src/.libs/libparasail_novec_la-nw.o src/.libs/libparasail_novec_la-sg.o src/.libs/libparasail_novec_la-sw.o src/.libs/libparasail_novec_la-nw_scan.o src/.libs/libparasail_novec_la-sg_scan.o src/.libs/libparasail_novec_la-sw_scan.o src/.libs/libparasail_novec_la-nw_banded.o src/.libs/libparasail_novec_la-nw_stats.o src/.libs/libparasail_novec_la-sg_stats.o src/.libs/libparasail_novec_la-sw_stats.o src/.libs/libparasail_novec_la-nw_stats_scan.o src/.libs/libparasail_novec_la-sg_stats_scan.o src/.libs/libparasail_novec_la-sw_stats_scan.o src/.libs/libparasail_novec_la-nw_trace.o src/.libs/libparasail_novec_la-sg_trace.o src/.libs/libparasail_novec_la-sw_trace.o src/.libs/libparasail_novec_la-nw_trace_scan.o src/.libs/libparasail_novec_la-sg_trace_scan.o src/.libs/libparasail_novec_la-sw_trace_scan.o
libtool: link: ranlib .libs/libparasail_novec.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec.la" && ln -s "../libparasail_novec.la" "libparasail_novec.la" )
libtool: link: ar cr .libs/libparasail_novec_table.a src/.libs/libparasail_novec_table_la-nw.o src/.libs/libparasail_novec_table_la-sg.o src/.libs/libparasail_novec_table_la-sw.o src/.libs/libparasail_novec_table_la-nw_scan.o src/.libs/libparasail_novec_table_la-sg_scan.o src/.libs/libparasail_novec_table_la-sw_scan.o src/.libs/libparasail_novec_table_la-nw_banded.o src/.libs/libparasail_novec_table_la-nw_stats.o src/.libs/libparasail_novec_table_la-sg_stats.o src/.libs/libparasail_novec_table_la-sw_stats.o src/.libs/libparasail_novec_table_la-nw_stats_scan.o src/.libs/libparasail_novec_table_la-sg_stats_scan.o src/.libs/libparasail_novec_table_la-sw_stats_scan.o
libtool: link: ranlib .libs/libparasail_novec_table.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec_table.la" && ln -s "../libparasail_novec_table.la" "libparasail_novec_table.la" )
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o libparasail_novec_rowcol.la src/libparasail_novec_rowcol_la-nw.lo src/libparasail_novec_rowcol_la-sg.lo src/libparasail_novec_rowcol_la-sw.lo src/libparasail_novec_rowcol_la-nw_scan.lo src/libparasail_novec_rowcol_la-sg_scan.lo src/libparasail_novec_rowcol_la-sw_scan.lo src/libparasail_novec_rowcol_la-nw_banded.lo src/libparasail_novec_rowcol_la-nw_stats.lo src/libparasail_novec_rowcol_la-sg_stats.lo src/libparasail_novec_rowcol_la-sw_stats.lo src/libparasail_novec_rowcol_la-nw_stats_scan.lo src/libparasail_novec_rowcol_la-sg_stats_scan.lo src/libparasail_novec_rowcol_la-sw_stats_scan.lo
libtool: link: ar cr .libs/libparasail_novec_rowcol.a src/.libs/libparasail_novec_rowcol_la-nw.o src/.libs/libparasail_novec_rowcol_la-sg.o src/.libs/libparasail_novec_rowcol_la-sw.o src/.libs/libparasail_novec_rowcol_la-nw_scan.o src/.libs/libparasail_novec_rowcol_la-sg_scan.o src/.libs/libparasail_novec_rowcol_la-sw_scan.o src/.libs/libparasail_novec_rowcol_la-nw_banded.o src/.libs/libparasail_novec_rowcol_la-nw_stats.o src/.libs/libparasail_novec_rowcol_la-sg_stats.o src/.libs/libparasail_novec_rowcol_la-sw_stats.o src/.libs/libparasail_novec_rowcol_la-nw_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sg_stats_scan.o src/.libs/libparasail_novec_rowcol_la-sw_stats_scan.o
libtool: link: ranlib .libs/libparasail_novec_rowcol.a
libtool: link: ( cd ".libs" && rm -f "libparasail_novec_rowcol.la" && ln -s "../libparasail_novec_rowcol.la" "libparasail_novec_rowcol.la" )
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/libsais.la contrib/sais-lite-lcp/sais.lo
libtool: link: ar cr tests/.libs/libsais.a contrib/sais-lite-lcp/.libs/sais.o
libtool: link: ranlib tests/.libs/libsais.a
libtool: link: ( cd "tests/.libs" && rm -f "libsais.la" && ln -s "../libsais.la" "libsais.la" )
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -version-info 7:2:4 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o libparasail.la -rpath /usr/lib/aarch64-linux-gnu src/libparasail_la-cigar.lo src/libparasail_la-cpuid_arm.lo src/libparasail_la-function_lookup.lo src/libparasail_la-io.lo src/libparasail_la-isastubs.lo src/libparasail_la-matrix_lookup.lo src/libparasail_la-memory.lo src/libparasail_la-parser.lo src/libparasail_la-pssw.lo src/libparasail_la-time.lo src/libparasail_la-nw_dispatch.lo src/libparasail_la-sg_dispatch.lo src/libparasail_la-sw_dispatch.lo src/libparasail_la-sg_qb_dispatch.lo src/libparasail_la-sg_qe_dispatch.lo src/libparasail_la-sg_qx_dispatch.lo src/libparasail_la-sg_db_dispatch.lo src/libparasail_la-sg_de_dispatch.lo src/libparasail_la-sg_dx_dispatch.lo src/libparasail_la-sg_qb_de_dispatch.lo src/libparasail_la-sg_qe_db_dispatch.lo src/libparasail_la-dispatch_profile.lo src/libparasail_la-satcheck.lo src/libparasail_la-striped_unwind.lo src/libparasail_la-traceback.lo libparasail_novec.la libparasail_novec_table.la libparasail_novec_rowcol.la -lm -lz
libtool: link: gcc -shared -fPIC -DPIC src/.libs/libparasail_la-cigar.o src/.libs/libparasail_la-cpuid_arm.o src/.libs/libparasail_la-function_lookup.o src/.libs/libparasail_la-io.o src/.libs/libparasail_la-isastubs.o src/.libs/libparasail_la-matrix_lookup.o src/.libs/libparasail_la-memory.o src/.libs/libparasail_la-parser.o src/.libs/libparasail_la-pssw.o src/.libs/libparasail_la-time.o src/.libs/libparasail_la-nw_dispatch.o src/.libs/libparasail_la-sg_dispatch.o src/.libs/libparasail_la-sw_dispatch.o src/.libs/libparasail_la-sg_qb_dispatch.o src/.libs/libparasail_la-sg_qe_dispatch.o src/.libs/libparasail_la-sg_qx_dispatch.o src/.libs/libparasail_la-sg_db_dispatch.o src/.libs/libparasail_la-sg_de_dispatch.o src/.libs/libparasail_la-sg_dx_dispatch.o src/.libs/libparasail_la-sg_qb_de_dispatch.o src/.libs/libparasail_la-sg_qe_db_dispatch.o src/.libs/libparasail_la-dispatch_profile.o src/.libs/libparasail_la-satcheck.o src/.libs/libparasail_la-striped_unwind.o src/.libs/libparasail_la-traceback.o -Wl,--whole-archive ./.libs/libparasail_novec.a ./.libs/libparasail_novec_table.a ./.libs/libparasail_novec_rowcol.a -Wl,--no-whole-archive -lm -lz -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-soname -Wl,libparasail.so.3 -o .libs/libparasail.so.3.4.2
libtool: link: (cd ".libs" && rm -f "libparasail.so.3" && ln -s "libparasail.so.3.4.2" "libparasail.so.3")
libtool: link: (cd ".libs" && rm -f "libparasail.so" && ln -s "libparasail.so.3.4.2" "libparasail.so")
libtool: link: ( cd ".libs" && rm -f "libparasail.la" && ln -s "../libparasail.la" "libparasail.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o apps/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o libparasail.la tests/libsais.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o apps/parasail_stats apps/parasail_stats.o libparasail.la
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o apps/.libs/parasail_stats apps/parasail_stats.o ./.libs/libparasail.so -lm -lz
libtool: link: g++ -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o apps/.libs/parasail_aligner apps/parasail_aligner-parasail_aligner.o contrib/getMemorySize.o ./.libs/libparasail.so -lm -lz tests/.libs/libsais.a -fopenmp
make[2]: Leaving directory '/build/parasail-2.4.3+dfsg'
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
dh_auto_test
make -j8 test VERBOSE=1
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
make tests/traceback tests/test_align tests/test_gcups tests/test_io tests/test_isa tests/test_matrix tests/test_query tests/test_sw_dispatch tests/test_verify tests/test_verify_tables tests/test_verify_rowcols tests/test_verify_traces tests/test_verify_cigars tests/test_12 tests/test_64 tests/test_p29 tests/libsais.la
make[2]: Entering directory '/build/parasail-2.4.3+dfsg'
make[2]: 'tests/libsais.la' is up to date.
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/traceback.o tests/traceback.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_align.o tests/test_align.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_gcups.o tests/test_gcups.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_io.o tests/test_io.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_isa.o tests/test_isa.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_matrix.o tests/test_matrix.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_query-test_query.o `test -f 'tests/test_query.c' || echo './'`tests/test_query.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_sw_dispatch.o tests/test_sw_dispatch.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify-test_verify.o `test -f 'tests/test_verify.c' || echo './'`tests/test_verify.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_tables-test_verify_tables.o `test -f 'tests/test_verify_tables.c' || echo './'`tests/test_verify_tables.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_rowcols-test_verify_rowcols.o `test -f 'tests/test_verify_rowcols.c' || echo './'`tests/test_verify_rowcols.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_traces-test_verify_traces.o `test -f 'tests/test_verify_traces.c' || echo './'`tests/test_verify_traces.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_verify_cigars-test_verify_cigars.o `test -f 'tests/test_verify_cigars.c' || echo './'`tests/test_verify_cigars.c
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_12.o tests/test_12.c
tests/test_verify_tables.c: In function 'main':
tests/test_verify_tables.c:328:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
328 | int do_neon = 1;
| ^~~~~~~
tests/test_verify_tables.c:327:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable]
327 | int do_altivec = 1;
| ^~~~~~~~~~
tests/test_verify_tables.c:326:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable]
326 | int do_avx2 = 1;
| ^~~~~~~
tests/test_verify_tables.c:325:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable]
325 | int do_sse41 = 1;
| ^~~~~~~~
tests/test_verify_tables.c:324:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
324 | int do_sse2 = 1;
| ^~~~~~~
tests/test_verify.c: In function 'main':
tests/test_verify.c:310:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
310 | int do_neon = 1;
| ^~~~~~~
tests/test_verify.c:309:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable]
309 | int do_altivec = 1;
| ^~~~~~~~~~
tests/test_verify.c:308:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable]
308 | int do_avx2 = 1;
| ^~~~~~~
tests/test_verify.c:307:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable]
307 | int do_sse41 = 1;
| ^~~~~~~~
tests/test_verify.c:306:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
306 | int do_sse2 = 1;
| ^~~~~~~
tests/test_verify_cigars.c: In function 'main':
tests/test_verify_cigars.c:311:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
311 | int do_neon = 1;
| ^~~~~~~
tests/test_verify_cigars.c:310:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable]
310 | int do_altivec = 1;
| ^~~~~~~~~~
tests/test_verify_cigars.c:309:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable]
309 | int do_avx2 = 1;
| ^~~~~~~
tests/test_verify_cigars.c:308:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable]
308 | int do_sse41 = 1;
| ^~~~~~~~
tests/test_verify_cigars.c:307:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
307 | int do_sse2 = 1;
| ^~~~~~~
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_64.o tests/test_64.c
tests/test_verify_traces.c: In function 'check_functions':
tests/test_verify_traces.c:180:37: warning: assignment to 'int8_t *' {aka 'signed char *'} from incompatible pointer type 'int *' [-Wincompatible-pointer-types]
180 | ref_trace_table = parasail_result_get_trace_table(reference_result);
| ^
tests/test_verify_traces.c:193:69: warning: passing argument 4 of 'diff_array' from incompatible pointer type [-Wincompatible-pointer-types]
193 | if (diff_array(size_a, size_b, ref_trace_table, trace_table, result)) {
| ^~~~~~~~~~~
| |
| int *
tests/test_verify_traces.c:83:17: note: expected 'int8_t *' {aka 'signed char *'} but argument is of type 'int *'
83 | int8_t *b_,
| ~~~~~~~~^~
tests/test_verify_traces.c: In function 'main':
tests/test_verify_traces.c:239:9: warning: variable 'do_neon' set but not used [-Wunused-but-set-variable]
239 | int do_neon = 1;
| ^~~~~~~
tests/test_verify_traces.c:238:9: warning: variable 'do_altivec' set but not used [-Wunused-but-set-variable]
238 | int do_altivec = 1;
| ^~~~~~~~~~
tests/test_verify_traces.c:237:9: warning: variable 'do_avx2' set but not used [-Wunused-but-set-variable]
237 | int do_avx2 = 1;
| ^~~~~~~
tests/test_verify_traces.c:236:9: warning: variable 'do_sse41' set but not used [-Wunused-but-set-variable]
236 | int do_sse41 = 1;
| ^~~~~~~~
tests/test_verify_traces.c:235:9: warning: variable 'do_sse2' set but not used [-Wunused-but-set-variable]
235 | int do_sse2 = 1;
| ^~~~~~~
gcc -DHAVE_CONFIG_H -I. -I./contrib -I./contrib/sais-lite-lcp -I./src -I/usr/include/htslib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c -o tests/test_p29.o tests/test_p29.c
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/traceback tests/traceback.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_gcups tests/test_gcups.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_io tests/test_io.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_isa tests/test_isa.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_matrix tests/test_matrix.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_query tests/test_query-test_query.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_sw_dispatch tests/test_sw_dispatch.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_verify tests/test_verify-test_verify.o libparasail.la
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_gcups tests/test_gcups.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_io tests/test_io.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/traceback tests/traceback.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_isa tests/test_isa.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_matrix tests/test_matrix.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_sw_dispatch tests/test_sw_dispatch.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_query tests/test_query-test_query.o ./.libs/libparasail.so -lm -lz -fopenmp
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_verify tests/test_verify-test_verify.o ./.libs/libparasail.so -lm -lz -fopenmp
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_verify_tables tests/test_verify_tables-test_verify_tables.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_verify_traces tests/test_verify_traces-test_verify_traces.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_12 tests/test_12.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_64 tests/test_64.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_p29 tests/test_p29.o libparasail.la
/bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o tests/test_align tests/test_align.o libparasail.la
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_verify_rowcols tests/test_verify_rowcols-test_verify_rowcols.o ./.libs/libparasail.so -lm -lz -fopenmp
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_verify_tables tests/test_verify_tables-test_verify_tables.o ./.libs/libparasail.so -lm -lz -fopenmp
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_12 tests/test_12.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_verify_cigars tests/test_verify_cigars-test_verify_cigars.o ./.libs/libparasail.so -lm -lz -fopenmp
libtool: link: gcc -fopenmp -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_verify_traces tests/test_verify_traces-test_verify_traces.o ./.libs/libparasail.so -lm -lz -fopenmp
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_64 tests/test_64.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_p29 tests/test_p29.o ./.libs/libparasail.so -lm -lz
libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/parasail-2.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o tests/.libs/test_align tests/test_align.o ./.libs/libparasail.so -lm -lz
make[2]: Leaving directory '/build/parasail-2.4.3+dfsg'
make check-TESTS
make[2]: Entering directory '/build/parasail-2.4.3+dfsg'
make[3]: Entering directory '/build/parasail-2.4.3+dfsg'
PASS: tests/test_isa
============================================================================
Testsuite summary for Pairwise Sequence Alignment Library 2.4.3
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[3]: Leaving directory '/build/parasail-2.4.3+dfsg'
make[2]: Leaving directory '/build/parasail-2.4.3+dfsg'
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_installdirs
dh_auto_install
make -j1 install DESTDIR=/build/parasail-2.4.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
make[2]: Entering directory '/build/parasail-2.4.3+dfsg'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu'
/bin/bash ./libtool --mode=install /usr/bin/install -c libparasail.la '/build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/libparasail.so.3.4.2 /build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.so.3.4.2
libtool: install: (cd /build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libparasail.so.3.4.2 libparasail.so.3 || { rm -f libparasail.so.3 && ln -s libparasail.so.3.4.2 libparasail.so.3; }; })
libtool: install: (cd /build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libparasail.so.3.4.2 libparasail.so || { rm -f libparasail.so && ln -s libparasail.so.3.4.2 libparasail.so; }; })
libtool: install: /usr/bin/install -c .libs/libparasail.lai /build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libparasail.la
libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c apps/parasail_aligner apps/parasail_stats '/build/parasail-2.4.3+dfsg/debian/tmp/usr/bin'
libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/aarch64-linux-gnu'
libtool: install: /usr/bin/install -c apps/.libs/parasail_aligner /build/parasail-2.4.3+dfsg/debian/tmp/usr/bin/parasail_aligner
libtool: warning: 'libparasail.la' has not been installed in '/usr/lib/aarch64-linux-gnu'
libtool: install: /usr/bin/install -c apps/.libs/parasail_stats /build/parasail-2.4.3+dfsg/debian/tmp/usr/bin/parasail_stats
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include'
/usr/bin/install -c -m 644 parasail.h '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail/matrices'
/usr/bin/install -c -m 644 parasail/matrices/blosum100.h parasail/matrices/blosum30.h parasail/matrices/blosum35.h parasail/matrices/blosum40.h parasail/matrices/blosum45.h parasail/matrices/blosum50.h parasail/matrices/blosum55.h parasail/matrices/blosum60.h parasail/matrices/blosum62.h parasail/matrices/blosum65.h parasail/matrices/blosum70.h parasail/matrices/blosum75.h parasail/matrices/blosum80.h parasail/matrices/blosum85.h parasail/matrices/blosum90.h parasail/matrices/blosum_map.h parasail/matrices/blosumn.h parasail/matrices/dnafull.h parasail/matrices/nuc44.h parasail/matrices/pam10.h parasail/matrices/pam100.h parasail/matrices/pam110.h parasail/matrices/pam120.h parasail/matrices/pam130.h parasail/matrices/pam140.h parasail/matrices/pam150.h parasail/matrices/pam160.h parasail/matrices/pam170.h parasail/matrices/pam180.h parasail/matrices/pam190.h parasail/matrices/pam20.h parasail/matrices/pam200.h parasail/matrices/pam210.h parasail/matrices/pam220.h parasail/matrices/pam230.h parasail/matrices/pam240.h parasail/matrices/pam250.h parasail/matrices/pam260.h parasail/matrices/pam270.h parasail/matrices/pam280.h '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail/matrices'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail'
/usr/bin/install -c -m 644 parasail/cpuid.h parasail/io.h parasail/function_lookup.h parasail/matrix_lookup.h '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail/matrices'
/usr/bin/install -c -m 644 parasail/matrices/pam290.h parasail/matrices/pam30.h parasail/matrices/pam300.h parasail/matrices/pam310.h parasail/matrices/pam320.h parasail/matrices/pam330.h parasail/matrices/pam340.h parasail/matrices/pam350.h parasail/matrices/pam360.h parasail/matrices/pam370.h parasail/matrices/pam380.h parasail/matrices/pam390.h parasail/matrices/pam40.h parasail/matrices/pam400.h parasail/matrices/pam410.h parasail/matrices/pam420.h parasail/matrices/pam430.h parasail/matrices/pam440.h parasail/matrices/pam450.h parasail/matrices/pam460.h parasail/matrices/pam470.h parasail/matrices/pam480.h parasail/matrices/pam490.h parasail/matrices/pam50.h parasail/matrices/pam500.h parasail/matrices/pam60.h parasail/matrices/pam70.h parasail/matrices/pam80.h parasail/matrices/pam90.h parasail/matrices/pam_map.h '/build/parasail-2.4.3+dfsg/debian/tmp/usr/include/parasail/matrices'
/bin/mkdir -p '/build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig'
/usr/bin/install -c -m 644 parasail-1.pc '/build/parasail-2.4.3+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig'
make[2]: Leaving directory '/build/parasail-2.4.3+dfsg'
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
dh_fixperms
find debian -name "*.c" -exec chmod -x \{\} \;
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
debian/rules override_dh_missing
make[1]: Entering directory '/build/parasail-2.4.3+dfsg'
find debian -name '*.la' | xargs rm -rf
dh_missing
make[1]: Leaving directory '/build/parasail-2.4.3+dfsg'
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libparasail3' in '../libparasail3_2.4.3+dfsg-2_arm64.deb'.
dpkg-deb: building package 'libparasail-dev' in '../libparasail-dev_2.4.3+dfsg-2_arm64.deb'.
dpkg-deb: building package 'libparasail3-dbgsym' in '../libparasail3-dbgsym_2.4.3+dfsg-2_arm64.deb'.
dpkg-deb: building package 'parasail' in '../parasail_2.4.3+dfsg-2_arm64.deb'.
dpkg-deb: building package 'parasail-dbgsym' in '../parasail-dbgsym_2.4.3+dfsg-2_arm64.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../parasail_2.4.3+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/15114 and its subdirectories
I: Current time: Tue Sep 13 17:14:46 -12 2022
I: pbuilder-time-stamp: 1663132486
Wed Aug 11 22:51:48 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net.
Wed Aug 11 22:51:48 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net.
Wed Aug 11 22:56:00 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net.
Wed Aug 11 22:56:01 UTC 2021 I: parasail_2.4.3+dfsg-2_arm64.changes:
Format: 1.8
Date: Wed, 27 Jan 2021 17:29:31 +0100
Source: parasail
Binary: libparasail-dev libparasail3 libparasail3-dbgsym parasail parasail-dbgsym
Architecture: arm64
Version: 2.4.3+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
libparasail-dev - Development heaaders and static libraries for parasail
libparasail3 - Lib with various pairwise sequence alignment algorithms
parasail - Aligner based on libparasail3
Changes:
parasail (2.4.3+dfsg-2) unstable; urgency=medium
.
* Team upload.
* debian/patches/nonx86: fix compilation on non-x86, non-arm, non-powerpc
* No tab in license text (routine-update)
Checksums-Sha1:
86a3f814e903c7843b2c71c33236708b96667fa4 130948 libparasail-dev_2.4.3+dfsg-2_arm64.deb
cb43b6b435eabf16fbf7ccc3353d3db5f696e4c7 888920 libparasail3-dbgsym_2.4.3+dfsg-2_arm64.deb
17f3bd707ba6b9c2a205d9d378753f307a384685 347232 libparasail3_2.4.3+dfsg-2_arm64.deb
45649545dca657a0df26ba4002b2e71b2447e545 299872 parasail-dbgsym_2.4.3+dfsg-2_arm64.deb
273a8cb7b004d9ff811ff158492c385f7aeaaf6c 6457 parasail_2.4.3+dfsg-2_arm64.buildinfo
2561a9d194a0c46dc0fbf1737251e5a6e707716a 57332 parasail_2.4.3+dfsg-2_arm64.deb
Checksums-Sha256:
355ee87398b8dd8354969658841e2bcfce2a78d5b15b537d6a3f91c31d35458e 130948 libparasail-dev_2.4.3+dfsg-2_arm64.deb
bf64e11dbea9c15bab7d0581d5c0899d3db1fe5c372da46c386ca50ee1db5170 888920 libparasail3-dbgsym_2.4.3+dfsg-2_arm64.deb
1a1f689502684925254a5427d30855b95c46b2079ef77edac88c67b5a4a01603 347232 libparasail3_2.4.3+dfsg-2_arm64.deb
89a18c64c423ec10117cc02670f6f5f75ffbdf4b752aae26fd97004730fe8e0f 299872 parasail-dbgsym_2.4.3+dfsg-2_arm64.deb
5f55dac85d0b4d71d5e43a019ce06b50aa127a51687d384c2818fb9fe04e2150 6457 parasail_2.4.3+dfsg-2_arm64.buildinfo
081973db59d54218e41bf9fe409303c70389596990c6c78f02b6d55fd525c7d6 57332 parasail_2.4.3+dfsg-2_arm64.deb
Files:
707aba2fd8ca2dd0ac6d3f7f7b88ac3b 130948 libdevel optional libparasail-dev_2.4.3+dfsg-2_arm64.deb
28534644394e669b161b0527ca7542e3 888920 debug optional libparasail3-dbgsym_2.4.3+dfsg-2_arm64.deb
ace4c9faf190d191bd0990d860c1563a 347232 libs optional libparasail3_2.4.3+dfsg-2_arm64.deb
ef6b4af96bf263ce520892b3fa6730cc 299872 debug optional parasail-dbgsym_2.4.3+dfsg-2_arm64.deb
1f65b75b4c33430de1875618d189cceb 6457 libs optional parasail_2.4.3+dfsg-2_arm64.buildinfo
d4b5dc95e4fe7c23a9c61152c223b798 57332 libs optional parasail_2.4.3+dfsg-2_arm64.deb
Wed Aug 11 22:56:02 UTC 2021 I: diffoscope 177 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/parasail_2.4.3+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/parasail_2.4.3+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/parasail_2.4.3+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/b1/parasail_2.4.3+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.h1HvxUP7dE/b2/parasail_2.4.3+dfsg-2_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.257s)
0.257s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.034s)
0.034s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Wed Aug 11 22:56:04 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists.
Wed Aug 11 22:56:04 UTC 2021 I: parasail from bullseye built successfully and reproducibly on arm64.
Wed Aug 11 22:56:05 UTC 2021 I: Submitting .buildinfo files to external archives:
Wed Aug 11 22:56:05 UTC 2021 I: Submitting 8.0K b1/parasail_2.4.3+dfsg-2_arm64.buildinfo.asc
Wed Aug 11 22:56:06 UTC 2021 I: Submitting 8.0K b2/parasail_2.4.3+dfsg-2_arm64.buildinfo.asc
Wed Aug 11 22:56:07 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Aug 11 22:56:07 UTC 2021 I: Done submitting .buildinfo files.
Wed Aug 11 22:56:07 UTC 2021 I: Removing signed parasail_2.4.3+dfsg-2_arm64.buildinfo.asc files:
removed './b1/parasail_2.4.3+dfsg-2_arm64.buildinfo.asc'
removed './b2/parasail_2.4.3+dfsg-2_arm64.buildinfo.asc'