Tue Aug 10 08:42:01 UTC 2021 I: starting to build phybin/bullseye/arm64 on jenkins on '2021-08-10 08:41' Tue Aug 10 08:42:01 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/33100/console.log Tue Aug 10 08:42:01 UTC 2021 I: Downloading source for bullseye/phybin=0.3-5 --2021-08-10 08:42:01-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/phybin/phybin_0.3-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2268 (2.2K) Saving to: ‘phybin_0.3-5.dsc’ 0K .. 100% 93.0M=0s 2021-08-10 08:42:01 (93.0 MB/s) - ‘phybin_0.3-5.dsc’ saved [2268/2268] Tue Aug 10 08:42:01 UTC 2021 I: phybin_0.3-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phybin Binary: phybin Architecture: any Version: 0.3-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/phybin Vcs-Git: https://salsa.debian.org/med-team/phybin.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev Package-List: phybin deb science optional arch=any Checksums-Sha1: f7f19054d67009425082a1a8d8492cc57c55b85c 111501 phybin_0.3.orig.tar.gz cf353b8a356c0e59408508e1c343eb323300ac66 6852 phybin_0.3-5.debian.tar.xz Checksums-Sha256: 45463b4bb65df8fb090eebff8d4340703104dc4a19c61a1eb27ebe8441ef07e0 111501 phybin_0.3.orig.tar.gz 27b17e286e5cac7379534b6f14c09f1c864b6fc8affe9c7c4c5e705e4e069dc9 6852 phybin_0.3-5.debian.tar.xz Files: 4011a17b976241f48cfd3f8cf04070db 111501 phybin_0.3.orig.tar.gz b32bd0c6478742e7faeaf286c38f9bd7 6852 phybin_0.3-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAO1v8UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHLTBAAq0exu3LmgcSkjKMWH0dMtsFwRcru 2d8ULN4D1sZ3uDyot3XdGBLs7XPyE+CUWDIGOeWpgHlJQ0vSq2N9Ti2O0B0+QqxM T3c6A1YLV7jdxkGzBK09IMa6cm7h/MPTt0Bh9s4hX4yn9PNhm1OHY0KBVq0Q+RZh hfC+46OXi8wC4yzCTZQT4m7oQgl5EHC5o+W783qo4lQRnO9hmRhHWxQHmfTNYFtY 1rmSSRHk0k2al6Sm3+k+X8azyCzzEB2+31sc/qA13Z+BBmcl2DDkXAz4mOv+ifdX AgtD8Q3uReLQbmJPjq+pzLpWbDVZ86p8fVw5ZkWF60IgfogBirOm2iLU1K8UAHU3 Z904JoXuJBpUliNO/GJYyoLuTc7P6hJKareZQkIqZB3WU/QMBgfTqh6G3MiZPPd4 t0pGT/c79kvZQAFLZf8Hq/ih2CU8sDveq4J9V7+p+oLRFBI7uJxbDvCcw6L8yOs2 3HLfRkRqY90Q4rA0lhheVTLMHC6K7bTPT8hzPfP0Ds6nuchZZjvl6OL6Rp7EUwmu KYrpgxU/SX94pkA5G7hBOf9sS6JEz+SLKsniCFHt7i9fZqT/TQoaNbJlK5kDNjyh ZVr1L1Tv2PEuE5EBmU2Rh1C8bdYw6ZhYwmO08gZRx05nqB7boPACwSC3laCAxuBc 1sCujvIgf0MfdUA= =li+M -----END PGP SIGNATURE----- Tue Aug 10 08:42:01 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 08:42:01 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net. Tue Aug 10 08:42:01 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Tue Aug 10 08:54:05 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 12 03:05:03 -12 2022 I: pbuilder-time-stamp: 1662995103 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [phybin_0.3-5.dsc] I: copying [./phybin_0.3.orig.tar.gz] I: copying [./phybin_0.3-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.OFbAycAS/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 25 02:34:39 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phybin_0.3-5.dsc dpkg-source: info: extracting phybin in phybin-0.3 dpkg-source: info: unpacking phybin_0.3.orig.tar.gz dpkg-source: info: unpacking phybin_0.3-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unconstraint-text-dependency.patch dpkg-source: info: applying unsafeIOToST.patch dpkg-source: info: applying ghc-8.6.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3112/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3112' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/pbuilderrc_Se2Y --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/b1 --logfile b1/build.log phybin_0.3-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 10 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/3112/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on haskell-devscripts; however: Package haskell-devscripts is not installed. pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on ghc; however: Package ghc is not installed. pbuilder-satisfydepends-dummy depends on libghc-hunit-dev; however: Package libghc-hunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-async-dev; however: Package libghc-async-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-fgl-dev; however: Package libghc-fgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-graphviz-dev; however: Package libghc-graphviz-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-hierarchical-clustering-dev; however: Package libghc-hierarchical-clustering-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-parsec3-dev; however: Package libghc-parsec3-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-prettyclass-dev; however: Package libghc-prettyclass-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-split-dev; however: Package libghc-split-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-text-dev; however: Package libghc-text-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-vector-dev; however: Package libghc-vector-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-test-framework-dev; however: Package libghc-test-framework-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-test-framework-hunit-dev; however: Package libghc-test-framework-hunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-test-framework-th-dev; however: Package libghc-test-framework-th-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cdbs{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-buildinfo{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} ghc{a} groff-base{a} haskell-devscripts{a} haskell-devscripts-minimal{a} hscolour{a} html-xml-utils{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libbsd-dev{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libghc-ansi-terminal-dev{a} libghc-ansi-wl-pprint-dev{a} libghc-async-dev{a} libghc-base-compat-dev{a} libghc-call-stack-dev{a} libghc-colour-dev{a} libghc-dlist-dev{a} libghc-exceptions-dev{a} libghc-extensible-exceptions-dev{a} libghc-fgl-dev{a} libghc-graphviz-dev{a} libghc-hashable-dev{a} libghc-hierarchical-clustering-dev{a} libghc-hostname-dev{a} libghc-hunit-dev{a} libghc-language-haskell-extract-dev{a} libghc-old-locale-dev{a} libghc-polyparse-dev{a} libghc-prettyclass-dev{a} libghc-primitive-dev{a} libghc-random-dev{a} libghc-regex-base-dev{a} libghc-regex-posix-dev{a} libghc-split-dev{a} libghc-src-exts-dev{a} libghc-temporary-dev{a} libghc-test-framework-dev{a} libghc-test-framework-hunit-dev{a} libghc-test-framework-th-dev{a} libghc-vector-dev{a} libghc-wl-pprint-text-dev{a} libghc-xml-dev{a} libgmp-dev{a} libgmpxx4ldbl{a} libicu67{a} libldap-2.4-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd-dev{a} libmd0{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpfm4{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libz3-4{a} llvm-11{a} llvm-11-runtime{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: binfmt-support ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules llvm-11-dev lynx publicsuffix wget 0 packages upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 173 MB of archives. After unpacking 1599 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 llvm-11-runtime arm64 1:11.0.1-2 [183 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libpfm4 arm64 4.11.1+git32-gd0b85fb-1 [45.4 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 llvm-11 arm64 1:11.0.1-2 [6450 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libgmpxx4ldbl arm64 2:6.2.1+dfsg-1 [337 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libgmp-dev arm64 2:6.2.1+dfsg-1 [625 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libffi-dev arm64 3.3-6 [53.2 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libmd-dev arm64 1.0.3-3 [45.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libbsd-dev arm64 0.11.3-1 [233 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libncurses-dev arm64 6.2+20201114-2 [335 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libncurses5-dev arm64 6.2+20201114-2 [936 B] Get: 22 http://deb.debian.org/debian bullseye/main arm64 ghc arm64 8.8.4-2 [109 MB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 cdbs all 0.4.163 [82.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 dh-buildinfo all 0.11+nmu2 [18.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 html-xml-utils arm64 7.7-1.1 [299 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 haskell-devscripts-minimal all 0.16.0 [40.8 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 hscolour arm64 1.24.4-3+b1 [359 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 haskell-devscripts all 0.16.0 [17.1 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libghc-colour-dev arm64 2.3.5-2+b1 [235 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libghc-ansi-terminal-dev arm64 0.10.3-1+b1 [176 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libghc-ansi-wl-pprint-dev arm64 0.6.9-2+b1 [82.2 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libghc-hashable-dev arm64 1.3.0.0-2+b1 [112 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libghc-async-dev arm64 2.2.2-2+b1 [79.5 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libghc-base-compat-dev arm64 0.11.1-1+b1 [85.9 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libghc-call-stack-dev arm64 0.2.0-1+b1 [25.3 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libghc-dlist-dev arm64 0.8.0.8-1+b1 [51.2 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libghc-exceptions-dev arm64 0.10.4-1+b1 [137 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libghc-extensible-exceptions-dev arm64 0.1.1.4-11+b1 [11.5 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libghc-fgl-dev arm64 5.7.0.3-1 [484 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libghc-polyparse-dev arm64 1.13-1+b1 [453 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libghc-random-dev arm64 1.1-12+b1 [174 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libghc-temporary-dev arm64 1.3-2+b1 [29.9 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libghc-wl-pprint-text-dev arm64 1.2.0.1-1+b1 [100 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libghc-graphviz-dev arm64 2999.20.0.4-1+b2 [4394 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libghc-hierarchical-clustering-dev arm64 0.4.7-1+b1 [93.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libghc-hostname-dev arm64 1.0-15+b1 [12.8 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libghc-hunit-dev arm64 1.6.0.0-3+b1 [121 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libghc-regex-base-dev arm64 0.94.0.0-1+b1 [120 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libghc-regex-posix-dev arm64 0.96.0.0-1+b1 [168 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libghc-language-haskell-extract-dev arm64 0.2.4-10+b1 [20.0 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libghc-old-locale-dev arm64 1.0.0.7-9+b1 [42.4 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libghc-prettyclass-dev arm64 1.0.0.0-9+b1 [55.6 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libghc-primitive-dev arm64 0.7.0.1-1+b1 [382 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libghc-split-dev arm64 0.2.3.4-1+b1 [57.4 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libghc-src-exts-dev arm64 1.23.1-2 [4592 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libghc-xml-dev arm64 1.3.14-10+b1 [258 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libghc-test-framework-dev arm64 0.8.2.0-4+b1 [219 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libghc-test-framework-hunit-dev arm64 0.3.0.2-7+b1 [26.0 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libghc-test-framework-th-dev arm64 0.2.4-12+b2 [28.2 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libghc-vector-dev arm64 0.12.1.2-2+b1 [1870 kB] Fetched 173 MB in 5s (38.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../05-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../06-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../07-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../08-libz3-4_4.8.10-1_arm64.deb ... Unpacking libz3-4:arm64 (4.8.10-1) ... Selecting previously unselected package libllvm11:arm64. Preparing to unpack .../09-libllvm11_1%3a11.0.1-2_arm64.deb ... Unpacking libllvm11:arm64 (1:11.0.1-2) ... Selecting previously unselected package llvm-11-runtime. Preparing to unpack .../10-llvm-11-runtime_1%3a11.0.1-2_arm64.deb ... Unpacking llvm-11-runtime (1:11.0.1-2) ... Selecting previously unselected package libpfm4:arm64. Preparing to unpack .../11-libpfm4_4.11.1+git32-gd0b85fb-1_arm64.deb ... Unpacking libpfm4:arm64 (4.11.1+git32-gd0b85fb-1) ... Selecting previously unselected package llvm-11. Preparing to unpack .../12-llvm-11_1%3a11.0.1-2_arm64.deb ... Unpacking llvm-11 (1:11.0.1-2) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../13-libgmpxx4ldbl_2%3a6.2.1+dfsg-1_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.2.1+dfsg-1) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../14-libgmp-dev_2%3a6.2.1+dfsg-1_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.2.1+dfsg-1) ... Selecting previously unselected package libffi-dev:arm64. Preparing to unpack .../15-libffi-dev_3.3-6_arm64.deb ... Unpacking libffi-dev:arm64 (3.3-6) ... Selecting previously unselected package libmd-dev:arm64. Preparing to unpack .../16-libmd-dev_1.0.3-3_arm64.deb ... Unpacking libmd-dev:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd-dev:arm64. Preparing to unpack .../17-libbsd-dev_0.11.3-1_arm64.deb ... Unpacking libbsd-dev:arm64 (0.11.3-1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../18-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libncurses-dev:arm64. Preparing to unpack .../19-libncurses-dev_6.2+20201114-2_arm64.deb ... Unpacking libncurses-dev:arm64 (6.2+20201114-2) ... Selecting previously unselected package libncurses5-dev:arm64. Preparing to unpack .../20-libncurses5-dev_6.2+20201114-2_arm64.deb ... Unpacking libncurses5-dev:arm64 (6.2+20201114-2) ... Selecting previously unselected package ghc. Preparing to unpack .../21-ghc_8.8.4-2_arm64.deb ... Unpacking ghc (8.8.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../22-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../23-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../24-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../25-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../26-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../27-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../28-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../29-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../30-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../31-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../32-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cdbs. 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Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../42-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../44-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../45-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package dh-buildinfo. Preparing to unpack .../50-dh-buildinfo_0.11+nmu2_all.deb ... Unpacking dh-buildinfo (0.11+nmu2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../51-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../52-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../53-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../54-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../55-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../56-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../57-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../58-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../59-libcurl3-gnutls_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package html-xml-utils. Preparing to unpack .../60-html-xml-utils_7.7-1.1_arm64.deb ... Unpacking html-xml-utils (7.7-1.1) ... Selecting previously unselected package haskell-devscripts-minimal. Preparing to unpack .../61-haskell-devscripts-minimal_0.16.0_all.deb ... Unpacking haskell-devscripts-minimal (0.16.0) ... Selecting previously unselected package hscolour. Preparing to unpack .../62-hscolour_1.24.4-3+b1_arm64.deb ... Unpacking hscolour (1.24.4-3+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/phybin-0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phybin_0.3-5_source.changes dpkg-buildpackage: info: source package phybin dpkg-buildpackage: info: source version 0.3-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean test -x debian/rules dh_clean . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ clean_recipe Running rm -rf dist dist-ghc dist-ghcjs dist-hugs debian/hlibrary.setup Setup.hi Setup.ho Setup.o .\*config\* Running rm -f configure-ghc-stamp configure-ghcjs-stamp build-ghc-stamp build-ghcjs-stamp build-hugs-stamp build-haddock-stamp Running rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs Running rm -f debian/extra-depends-ghc debian/extra-depends-ghcjs Running rm -f debian/hlibrary.Makefile Running rm -rf debian/dh_haskell_shlibdeps Running rm -rf debian/tmp-db debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85 CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ make_setup_recipe Running ghc --make Setup.hs -o debian/hlibrary.setup [1 of 1] Compiling Main ( Setup.hs, Setup.o ) Setup.hs:5:39: warning: [-Wtabs] Tab character found here, and in two further locations. Please use spaces instead. | 5 | import Distribution.PackageDescription | ^^ Setup.hs:7:1: warning: [-Wdeprecations] Module `System.Cmd' is deprecated: Use "System.Process" instead | 7 | import System.Cmd(system) | ^^^^^^^^^^^^^^^^^^^^^^^^^ Linking debian/hlibrary.setup ... . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ configure_recipe Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl\,-z\,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests Running Setup.hs ... Using Parsec parser Configuring phybin-0.3... Flags chosen: bitvec=False, hashrf=True, sequential=False Warning: 'ghc-options: -rtsopts' has no effect for libraries. It should only be used for executables. Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.13.0.0 Dependency bytestring -any: using bytestring-0.10.10.1 Dependency containers -any: using containers-0.6.2.1 Dependency directory -any: using directory-1.3.6.0 Dependency fgl -any: using fgl-5.7.0.3 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.4 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.14.0 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.9.0 Dependency split >=0.2: using split-0.2.3.4 Dependency text -any: using text-1.2.4.0 Dependency time -any: using time-1.9.3 Dependency vector >=0.10: using vector-0.12.1.2 Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.13.0.0 Dependency bytestring -any: using bytestring-0.10.10.1 Dependency containers -any: using containers-0.6.2.1 Dependency directory -any: using directory-1.3.6.0 Dependency fgl -any: using fgl-5.7.0.3 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.4 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.14.0 Dependency phybin -any: using phybin-0.3 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.9.0 Dependency split >=0.2: using split-0.2.3.4 Dependency text -any: using text-1.2.4.0 Dependency time -any: using time-1.9.3 Dependency vector >=0.10: using vector-0.12.1.2 Dependency HUnit -any: using HUnit-1.6.0.0 Dependency async -any: using async-2.2.2 Dependency base >=3 && <5: using base-4.13.0.0 Dependency bytestring -any: using bytestring-0.10.10.1 Dependency containers -any: using containers-0.6.2.1 Dependency directory -any: using directory-1.3.6.0 Dependency fgl -any: using fgl-5.7.0.3 Dependency filepath -any: using filepath-1.4.2.1 Dependency graphviz >=2999.16: using graphviz-2999.20.0.4 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.14.0 Dependency prettyclass -any: using prettyclass-1.0.0.0 Dependency process -any: using process-1.6.9.0 Dependency split >=0.2: using split-0.2.3.4 Dependency test-framework -any: using test-framework-0.8.2.0 Dependency test-framework-hunit -any: using test-framework-hunit-0.3.0.2 Dependency test-framework-th -any: using test-framework-th-0.2.4 Dependency text -any: using text-1.2.4.0 Dependency time -any: using time-1.9.3 Dependency vector >=0.10: using vector-0.12.1.2 Source component graph: component test:test-phybin component lib component exe:phybin dependency lib Configured component graph: component phybin-0.3-IF4MFGascfa1Gtvcl9ywjU-test-phybin include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1 include test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW include test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2 include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd component phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd component phybin-0.3-6r6jrsmMwP3E6mb997f666-phybin include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd Linked component graph: unit phybin-0.3-IF4MFGascfa1Gtvcl9ywjU-test-phybin include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1 include test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW include test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2 include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd unit phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd Bio.Phylogeny.PhyBin=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-HyaXiaCol5i3ZFP5WWzll4:Bio.Phylogeny.PhyBin.Visualize unit phybin-0.3-6r6jrsmMwP3E6mb997f666-phybin include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 include base-4.13.0.0 include bytestring-0.10.10.1 include containers-0.6.2.1 include directory-1.3.6.0 include fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks include filepath-1.4.2.1 include graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK include parsec-3.1.14.0 include phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 include process-1.6.9.0 include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL include text-1.2.4.0 include time-1.9.3 include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd Ready component graph: definite phybin-0.3-IF4MFGascfa1Gtvcl9ywjU-test-phybin depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 depends base-4.13.0.0 depends bytestring-0.10.10.1 depends containers-0.6.2.1 depends directory-1.3.6.0 depends fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks depends filepath-1.4.2.1 depends graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK depends parsec-3.1.14.0 depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 depends process-1.6.9.0 depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL depends test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1 depends test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW depends test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2 depends text-1.2.4.0 depends time-1.9.3 depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd definite phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 depends base-4.13.0.0 depends bytestring-0.10.10.1 depends containers-0.6.2.1 depends directory-1.3.6.0 depends fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks depends filepath-1.4.2.1 depends graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK depends parsec-3.1.14.0 depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 depends process-1.6.9.0 depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL depends text-1.2.4.0 depends time-1.9.3 depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd definite phybin-0.3-6r6jrsmMwP3E6mb997f666-phybin depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4 depends base-4.13.0.0 depends bytestring-0.10.10.1 depends containers-0.6.2.1 depends directory-1.3.6.0 depends fgl-5.7.0.3-8JIA4cH6ZS0Jch5jrJytks depends filepath-1.4.2.1 depends graphviz-2999.20.0.4-I2DRuStlMTHCR14bzHlbyZ depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK depends parsec-3.1.14.0 depends phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96 depends process-1.6.9.0 depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL depends text-1.2.4.0 depends time-1.9.3 depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd Using Cabal-3.0.1.0 compiled by ghc-8.8 Using compiler: ghc-8.8.4 Using install prefix: /usr Executables installed in: /usr/bin Libraries installed in: /usr/lib/haskell-packages/ghc/lib/aarch64-linux-ghc-8.8.4/phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 Dynamic Libraries installed in: /usr/lib/haskell-packages/ghc/lib/aarch64-linux-ghc-8.8.4 Private executables installed in: /usr/lib/aarch64-linux-ghc-8.8.4/phybin-0.3 Data files installed in: /usr/share/phybin Documentation installed in: /usr/share/doc/aarch64-linux-ghc-8.8.4/phybin-0.3 Configuration files installed in: /usr/etc No alex found Using ar found on system at: /usr/bin/aarch64-linux-gnu-ar No c2hs found No cpphs found No doctest found Using gcc version 10 found on system at: /usr/bin/aarch64-linux-gnu-gcc Using ghc version 8.8.4 found on system at: /usr/bin/ghc Using ghc-pkg version 8.8.4 found on system at: /usr/bin/ghc-pkg No ghcjs found No ghcjs-pkg found No greencard found Using haddock version 2.23.0 found on system at: /usr/bin/haddock No happy found Using haskell-suite found on system at: haskell-suite-dummy-location Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location No hmake found Using hpc version 0.67 found on system at: /usr/bin/hpc Using hsc2hs version 0.68.7 found on system at: /usr/bin/hsc2hs Using hscolour version 1.24 found on system at: /usr/bin/HsColour No jhc found Using ld found on system at: /usr/bin/aarch64-linux-gnu-ld.gold No pkg-config found Using runghc version 8.8.4 found on system at: /usr/bin/runghc Using strip version 2.35 found on system at: /usr/bin/strip Using tar found on system at: /bin/tar No uhc found touch configure-ghc-stamp . /usr/share/haskell-devscripts/Dh_Haskell.sh && \ build_recipe Running debian/hlibrary.setup build --builddir=dist-ghc Running Setup.hs ... Preprocessing test suite 'test-phybin' for phybin-0.3.. Building test suite 'test-phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize [1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o ) [4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o ) [5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ [9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o ) : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Linking dist-ghc/build/test-phybin/test-phybin ... Preprocessing library for phybin-0.3.. Building library for phybin-0.3.. [1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o ) [4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o ) [5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ Preprocessing executable 'phybin' for phybin-0.3.. Building executable 'phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin [ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, Just _) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: (NTInterior (_, Just _) _) | 122 | case s of | ^^^^^^^^^^... [ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o ) [ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o ) [ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Please use spaces instead. | 247 | tree | ^^^^^^^^ [ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Please use spaces instead. | 120 | if reg | ^^^^^^ [ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o ) [10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o ) Main.hs:151:1: warning: [-Wtabs] Tab character found here, and in 66 further locations. Please use spaces instead. | 151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++ | ^^^^^^^^ Main.hs:263:14: warning: accepting non-standard pattern guards (use PatternGuards to suppress this message) Expected _ <- num_taxa cfg | 263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant" | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin Linking dist-ghc/build/phybin/phybin ... touch build-ghc-stamp Adding cdbs dependencies to debian/phybin.substvars dh_installdirs -pphybin \ dh_haskell_blurbs "ghc" -pphybin debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc Running Setup.hs ... Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/aarch64-linux-ghc-8.8.4/phybin-0.3-HyaXiaCol5i3ZFP5WWzll4 Installing executable phybin in debian/tmp-inst-ghc/usr/bin Warning: The directory debian/tmp-inst-ghc/usr/bin is not in the system search path. dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin dh_installdocs -pphybin dh_installexamples -pphybin dh_installman -pphybin dh_installinfo -pphybin dh_installmenu -pphybin dh_installcron -pphybin dh_systemd_enable -pphybin dh_installinit -pphybin dh_installdebconf -pphybin dh_installemacsen -pphybin dh_installcatalogs -pphybin dh_installpam -pphybin dh_installlogrotate -pphybin dh_installlogcheck -pphybin dh_installchangelogs -pphybin dh_installudev -pphybin dh_lintian -pphybin dh_bugfiles -pphybin dh_install -pphybin dh_systemd_start -pphybin dh_link -pphybin dh_buildinfo -pphybin dh_installmime -pphybin dh_installgsettings -pphybin dh_strip -pphybin --no-automatic-dbgsym dh_strip_nondeterminism -pphybin dh_compress -pphybin -X .haddock -X .hs -X .txt dh_fixperms -pphybin dh_makeshlibs -pphybin -XlibHS dh_installdeb -pphybin dh_perl -pphybin dh_shlibdeps -pphybin -- --ignore-missing-info dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against libutil.so.1 (it uses none of the library's symbols) dh_gencontrol -pphybin dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined dh_md5sums -pphybin dh_builddeb -pphybin dpkg-deb: building package 'phybin' in '../phybin_0.3-5_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../phybin_0.3-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3112 and its subdirectories I: Current time: Mon Sep 12 03:16:59 -12 2022 I: pbuilder-time-stamp: 1662995819 Tue Aug 10 08:54:06 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Tue Aug 10 08:54:06 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Tue Aug 10 09:10:04 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Tue Aug 10 09:10:05 UTC 2021 I: phybin_0.3-5_arm64.changes: Format: 1.8 Date: Mon, 25 Jan 2021 20:00:10 +0530 Source: phybin Binary: phybin Architecture: arm64 Version: 0.3-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: phybin - binning/clustering newick trees by topology Closes: 970301 Changes: phybin (0.3-5) unstable; urgency=medium . * Team Upload. * Add autopkgtests (Closes: #970301) Checksums-Sha1: c7c5bf289408d2f3b8e6b6dcbd00ada1d58a378a 7029 phybin_0.3-5_arm64.buildinfo a247042881197b8689a6ec35a328cc9a128a2958 1972524 phybin_0.3-5_arm64.deb Checksums-Sha256: bd0a33bea69dc282098c118b74131950856850ed0acded5c252d09b6e2e0c092 7029 phybin_0.3-5_arm64.buildinfo 836040f2d2e498e84c9bd226515bcc0dcea9ff600361b5640cb2ab2ad9159d21 1972524 phybin_0.3-5_arm64.deb Files: e33b0c9b0d0fb5ab315e39fe52c3edf3 7029 science optional phybin_0.3-5_arm64.buildinfo 0c7a74d92b59a75e815a4417cc7b05b2 1972524 science optional phybin_0.3-5_arm64.deb Tue Aug 10 09:10:06 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/phybin_0.3-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/phybin_0.3-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/phybin_0.3-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/b1/phybin_0.3-5_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.7m7D4Dcxcd/b2/phybin_0.3-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.251s) 0.251s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 09:10:08 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 09:10:08 UTC 2021 I: phybin from bullseye built successfully and reproducibly on arm64. Tue Aug 10 09:10:09 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 09:10:09 UTC 2021 I: Submitting 8.0K b1/phybin_0.3-5_arm64.buildinfo.asc Tue Aug 10 09:10:11 UTC 2021 I: Submitting 8.0K b2/phybin_0.3-5_arm64.buildinfo.asc Tue Aug 10 09:10:12 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 09:10:12 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 09:10:12 UTC 2021 I: Removing signed phybin_0.3-5_arm64.buildinfo.asc files: removed './b1/phybin_0.3-5_arm64.buildinfo.asc' removed './b2/phybin_0.3-5_arm64.buildinfo.asc'