Fri Jul  9 22:17:27 UTC 2021  I: starting to build rate4site/bullseye/arm64 on jenkins on '2021-07-09 22:17'
Fri Jul  9 22:17:27 UTC 2021  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/39795/console.log
Fri Jul  9 22:17:27 UTC 2021  I: Downloading source for bullseye/rate4site=3.0.0-7
--2021-07-09 22:17:27--  http://cdn-fastly.deb.debian.org/debian/pool/main/r/rate4site/rate4site_3.0.0-7.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2054 (2.0K)
Saving to: ‘rate4site_3.0.0-7.dsc’

     0K ..                                                    100%  183M=0s

2021-07-09 22:17:27 (183 MB/s) - ‘rate4site_3.0.0-7.dsc’ saved [2054/2054]

Fri Jul  9 22:17:27 UTC 2021  I: rate4site_3.0.0-7.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: rate4site
Binary: rate4site
Architecture: any
Version: 3.0.0-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Guy Yachdav <gyachdav@rostlab.org>, Laszlo Kajan <lkajan@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://www.tau.ac.il/~itaymay/cp/rate4site.html
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/rate4site
Vcs-Git: https://salsa.debian.org/med-team/rate4site.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13)
Package-List:
 rate4site deb science optional arch=any
Checksums-Sha1:
 837fb82c4ac368ebc64a5d8697706be3b0679829 303488 rate4site_3.0.0.orig.tar.gz
 c32631541b71cd111da36609964f9dade0545cf6 4572 rate4site_3.0.0-7.debian.tar.xz
Checksums-Sha256:
 5f748131bc2d10383c35c3141a835efa4ec1e7088cd9d8970e8024021aa509ac 303488 rate4site_3.0.0.orig.tar.gz
 004b82bdba0f68d523b9cef639413feaa6676ea6d93ac7768efbda435ac9c531 4572 rate4site_3.0.0-7.debian.tar.xz
Files:
 c06ec2429d1535bf91e8dbcaed537d30 303488 rate4site_3.0.0.orig.tar.gz
 238acd6a6f009aa1d1d31ee2bbda16f0 4572 rate4site_3.0.0-7.debian.tar.xz

-----BEGIN PGP SIGNATURE-----

iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/BQIURHHRpbGxlQGRl
Ymlhbi5vcmcACgkQV4oElNHGRtGzgRAAg/cnYIn16dMLb3pUjStlJgEVW6hZ9vaX
/xhiV/Wi94sO4eM41edAT4ihryVCjSS5u2n2oeG5C29NnV1XfCaG8VIRm3cPqAap
ga3xbSz42cMlHtMw8p+OP3OX/zBr6lRm+fyVolQgVJYzSGNL6TsRkE5Ae5tAIKKb
lAPfSunbafJKhlEh05wvvyxQLweI950dHjgExDOcVSYBXTU02W9DYZj7UHs9xn3h
BBs7KuktC5RIQhJ3lKoRLRtG28MN3iQXPaGVy06e+DhZjvW6IiJpVyVvoPhZRUQ/
dS+eYrIvgglWOm0zhXNli1bYlcQFGYP4svR0v4acChqJQHwn2WQWnz4kTws82G+6
Y+jIb2zZD1lbFVB9xgSj661xjYbpbbb61awiy3hxLj/RlErNDQXe10xGT8cXfXUx
8zwpsGbssjbAIiQsfEz4Uk8TWka2yheyXokXkffALvxP/oLJoUCxZt6/41U1uWDm
jQfh6JYVj1hZwz4E2mHKfIEw8hQg4pAzaNAYIk72u7zEThKE+r5/NMni6OU+2oY+
J2mupu9TYj1cohiNp9FG0ixLamBmGZpjRM5rn5jmuajJnlcl+PdUJ3IsAle2AtU2
zSoG3TE5gddL3Z2IhRcmI7fdAYmt7ufrg9Ph6MMM0GlCidDmLMDs0i1rnsVO8x3y
jRsVBk45mCs=
=1JNI
-----END PGP SIGNATURE-----
Fri Jul  9 22:17:27 UTC 2021  I: Checking whether the package is not for us
Fri Jul  9 22:17:27 UTC 2021  I: Starting 1st build on remote node codethink12-arm64.debian.net.
Fri Jul  9 22:17:27 UTC 2021  I: Preparing to do remote build '1' on codethink12-arm64.debian.net.
Fri Jul  9 22:19:48 UTC 2021  I: Deleting $TMPDIR on codethink12-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Jul  9 10:17:30 -12 2021
I: pbuilder-time-stamp: 1625869050
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [rate4site_3.0.0-7.dsc]
I: copying [./rate4site_3.0.0.orig.tar.gz]
I: copying [./rate4site_3.0.0-7.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.PWPFrO61/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 27 06:08:05 2020 -12
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./rate4site_3.0.0-7.dsc
dpkg-source: info: extracting rate4site in rate4site-3.0.0
dpkg-source: info: unpacking rate4site_3.0.0.orig.tar.gz
dpkg-source: info: unpacking rate4site_3.0.0-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/12517/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
  DISTRIBUTION=''
  HOME='/var/lib/jenkins'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='12517'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/pbuilderrc_LROk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/b1 --logfile b1/build.log rate4site_3.0.0-7.dsc'
  SUDO_GID='117'
  SUDO_UID='110'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  USERNAME='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.16:3128'
I: uname -a
  Linux codethink12-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux
I: ls -l /bin
  total 5252
  -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash
  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bunzip2
  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bzcat
  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Jul 20  2020 bzdiff
  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4877 Sep  4  2019 bzexe
  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Jul 20  2020 bzgrep
  -rwxr-xr-x 3 root root   34808 Jul 20  2020 bzip2
  -rwxr-xr-x 1 root root   14264 Jul 20  2020 bzip2recover
  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Jul 20  2020 bzmore
  -rwxr-xr-x 1 root root   39832 Sep 22  2020 cat
  -rwxr-xr-x 1 root root   64512 Sep 22  2020 chgrp
  -rwxr-xr-x 1 root root   60368 Sep 22  2020 chmod
  -rwxr-xr-x 1 root root   64528 Sep 22  2020 chown
  -rwxr-xr-x 1 root root  138896 Sep 22  2020 cp
  -rwxr-xr-x 1 root root  129544 Dec 10  2020 dash
  -rwxr-xr-x 1 root root  101384 Sep 22  2020 date
  -rwxr-xr-x 1 root root   80984 Sep 22  2020 dd
  -rwxr-xr-x 1 root root   89824 Sep 22  2020 df
  -rwxr-xr-x 1 root root  143088 Sep 22  2020 dir
  -rwxr-xr-x 1 root root   76152 Feb  7 02:38 dmesg
  lrwxrwxrwx 1 root root       8 Nov  6  2019 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Nov  6  2019 domainname -> hostname
  -rwxr-xr-x 1 root root   35632 Sep 22  2020 echo
  -rwxr-xr-x 1 root root      28 Nov  9  2020 egrep
  -rwxr-xr-x 1 root root   31512 Sep 22  2020 false
  -rwxr-xr-x 1 root root      28 Nov  9  2020 fgrep
  -rwxr-xr-x 1 root root   64856 Feb  7 02:38 findmnt
  -rwsr-xr-x 1 root root   34824 Feb 26 04:12 fusermount
  -rwxr-xr-x 1 root root  178400 Nov  9  2020 grep
  -rwxr-xr-x 2 root root    2346 Mar  2 11:30 gunzip
  -rwxr-xr-x 1 root root    6376 Mar  2 11:30 gzexe
  -rwxr-xr-x 1 root root   93744 Mar  2 11:30 gzip
  -rwxr-xr-x 1 root root   18440 Nov  6  2019 hostname
  -rwxr-xr-x 1 root root   68720 Sep 22  2020 ln
  -rwxr-xr-x 1 root root   52720 Feb  7  2020 login
  -rwxr-xr-x 1 root root  143088 Sep 22  2020 ls
  -rwxr-xr-x 1 root root  161960 Feb  7 02:38 lsblk
  -rwxr-xr-x 1 root root   85200 Sep 22  2020 mkdir
  -rwxr-xr-x 1 root root   68744 Sep 22  2020 mknod
  -rwxr-xr-x 1 root root   43976 Sep 22  2020 mktemp
  -rwxr-xr-x 1 root root   51368 Feb  7 02:38 more
  -rwsr-xr-x 1 root root   51360 Feb  7 02:38 mount
  -rwxr-xr-x 1 root root   14496 Feb  7 02:38 mountpoint
  -rwxr-xr-x 1 root root  134808 Sep 22  2020 mv
  lrwxrwxrwx 1 root root       8 Nov  6  2019 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr 18 03:38 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   35720 Sep 22  2020 pwd
  lrwxrwxrwx 1 root root       4 Jun 21 14:26 rbash -> bash
  -rwxr-xr-x 1 root root   43872 Sep 22  2020 readlink
  -rwxr-xr-x 1 root root   68592 Sep 22  2020 rm
  -rwxr-xr-x 1 root root   43880 Sep 22  2020 rmdir
  -rwxr-xr-x 1 root root   19208 Sep 27  2020 run-parts
  -rwxr-xr-x 1 root root  114016 Dec 22  2018 sed
  lrwxrwxrwx 1 root root       4 Jul  8 21:25 sh -> dash
  -rwxr-xr-x 1 root root   35656 Sep 22  2020 sleep
  -rwxr-xr-x 1 root root   72640 Sep 22  2020 stty
  -rwsr-xr-x 1 root root   67776 Feb  7 02:38 su
  -rwxr-xr-x 1 root root   35672 Sep 22  2020 sync
  -rwxr-xr-x 1 root root  535768 Feb 16 21:55 tar
  -rwxr-xr-x 1 root root   10568 Sep 27  2020 tempfile
  -rwxr-xr-x 1 root root   89120 Sep 22  2020 touch
  -rwxr-xr-x 1 root root   31512 Sep 22  2020 true
  -rwxr-xr-x 1 root root   14264 Feb 26 04:12 ulockmgr_server
  -rwsr-xr-x 1 root root   30880 Feb  7 02:38 umount
  -rwxr-xr-x 1 root root   35640 Sep 22  2020 uname
  -rwxr-xr-x 2 root root    2346 Mar  2 11:30 uncompress
  -rwxr-xr-x 1 root root  143088 Sep 22  2020 vdir
  -rwxr-xr-x 1 root root   59584 Feb  7 02:38 wdctl
  lrwxrwxrwx 1 root root       8 Nov  6  2019 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Mar  2 11:30 zcat
  -rwxr-xr-x 1 root root    1678 Mar  2 11:30 zcmp
  -rwxr-xr-x 1 root root    5880 Mar  2 11:30 zdiff
  -rwxr-xr-x 1 root root      29 Mar  2 11:30 zegrep
  -rwxr-xr-x 1 root root      29 Mar  2 11:30 zfgrep
  -rwxr-xr-x 1 root root    2081 Mar  2 11:30 zforce
  -rwxr-xr-x 1 root root    7585 Mar  2 11:30 zgrep
  -rwxr-xr-x 1 root root    2206 Mar  2 11:30 zless
  -rwxr-xr-x 1 root root    1842 Mar  2 11:30 zmore
  -rwxr-xr-x 1 root root    4553 Mar  2 11:30 znew
I: user script /srv/workspace/pbuilder/12517/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
Need to get 17.9 MB of archives. After unpacking 67.3 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB]
Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB]
Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB]
Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB]
Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB]
Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB]
Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB]
Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB]
Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB]
Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB]
Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB]
Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB]
Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB]
Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB]
Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB]
Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB]
Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB]
Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB]
Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB]
Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB]
Fetched 17.9 MB in 0s (52.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ...
Unpacking bsdextrautils (2.36.1-7) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:arm64.
Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ...
Unpacking libsigsegv2:arm64 (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ...
Unpacking libdebhelper-perl (13.3.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.11.0-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ...
Unpacking libelf1:arm64 (0.183-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ...
Unpacking dwz (0.13+20210201-1) ...
Selecting previously unselected package libicu67:arm64.
Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ...
Unpacking libicu67:arm64 (67.1-7) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ...
Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-4_arm64.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.3.4_all.deb ...
Unpacking debhelper (13.3.4) ...
Setting up libpipeline1:arm64 (1.5.3-1) ...
Setting up bsdextrautils (2.36.1-7) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:arm64 (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libmagic1:arm64 (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:arm64 (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:arm64 (0.183-1) ...
Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.3.4) ...
Processing triggers for libc-bin (2.31-12) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/rate4site-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../rate4site_3.0.0-7_source.changes
dpkg-buildpackage: info: source package rate4site
dpkg-buildpackage: info: source version 3.0.0-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
configure.ac:8: installing './compile'
   dh_auto_configure
	./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
./configure: line 3796: test: syntax error: `-O2' unexpected
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking string usability... yes
checking string presence... yes
checking for string... yes
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking for size_t... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking for ranlib... ranlib
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/phylogeny/Makefile
config.status: creating src/rate4site/Makefile
config.status: creating config.h
config.status: executing depfiles commands
   dh_auto_build
	make -j8
make[1]: Entering directory '/build/rate4site-3.0.0'
make  all-recursive
make[2]: Entering directory '/build/rate4site-3.0.0'
Making all in src/phylogeny
make[3]: Entering directory '/build/rate4site-3.0.0/src/phylogeny'
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o alphabet.o alphabet.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o sequenceContainer.o sequenceContainer.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o sequence.o sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o mulAlphabet.o mulAlphabet.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o someUtil.o someUtil.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o logFile.o logFile.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o gainLossAlphabet.o gainLossAlphabet.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o pijAccelerator.o pijAccelerator.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o replacementModel.o replacementModel.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o distribution.o distribution.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o readTree.o readTree.cpp
someUtil.cpp: In function 'void createDir(const string&, const string&)':
someUtil.cpp:507:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  507 |          system(sysCall.c_str());
      |          ~~~~~~^~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o errorMsg.o errorMsg.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o nucleotide.o nucleotide.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o amino.o amino.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o geneticCodeHolder.o geneticCodeHolder.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o codon.o codon.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o doubleRep.o doubleRep.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o evaluateCharacterFreq.o evaluateCharacterFreq.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o uniDistribution.o uniDistribution.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o generalGammaDistribution.o generalGammaDistribution.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o readDatMatrix.o readDatMatrix.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o datMatrixHolder.o datMatrixHolder.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o chebyshevAccelerator.o chebyshevAccelerator.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o nucJC.o nucJC.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o aaJC.o aaJC.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o gtrModel.o gtrModel.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o fromQtoPt.o fromQtoPt.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o distanceTable.o distanceTable.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o nj.o nj.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o njConstrain.o njConstrain.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o numRec.o numRec.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o uniformDistribution.o uniformDistribution.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computePijComponent.o computePijComponent.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o stochasticProcess.o stochasticProcess.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o suffStatComponent.o suffStatComponent.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o unObservableData.o unObservableData.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o likeDist.o likeDist.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o countTableComponent.o countTableComponent.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o fastStartTree.o fastStartTree.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o likelihoodComputationFactors.o likelihoodComputationFactors.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bestAlpha.o bestAlpha.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o gammaDistribution.o gammaDistribution.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o siteSpecificRate.o siteSpecificRate.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o likelihoodComputation.o likelihoodComputation.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o recognizeFormat.o recognizeFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bblEM.o bblEM.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o hky.o hky.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bestGtrModelParams.o bestGtrModelParams.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o tamura92.o tamura92.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bestHKYparam.o bestHKYparam.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bestTamura92param.o bestTamura92param.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o talRandom.o talRandom.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computeSubstitutionCounts.o computeSubstitutionCounts.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o fromCountTableComponentToDistance.o fromCountTableComponentToDistance.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computeCounts.o computeCounts.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computeDownAlg.o computeDownAlg.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computeUpAlg.o computeUpAlg.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computeUpAlgFactors.o computeUpAlgFactors.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o gammaUtilities.o gammaUtilities.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o seqContainerTreeMap.o seqContainerTreeMap.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o treeUtil.o treeUtil.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o matrixUtils.o matrixUtils.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o simulateCodonsJumps.o simulateCodonsJumps.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computePosteriorExpectationOfSubstitutions.o computePosteriorExpectationOfSubstitutions.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o computePosteriorExpectationOfSubstitutions_nonReversibleSp.o computePosteriorExpectationOfSubstitutions_nonReversibleSp.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o multipleStochasticProcess.o multipleStochasticProcess.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o simulateJumps.o simulateJumps.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o simulateJumpsAbstract.o simulateJumpsAbstract.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o treeIt.o treeIt.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o likelihoodComputationGL.o likelihoodComputationGL.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o tree.o tree.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bblEMProportionalEB.o bblEMProportionalEB.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o fromCountTableComponentToDistancePropEB.o fromCountTableComponentToDistancePropEB.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o likeDistPropEB.o likeDistPropEB.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o bblLSProportionalEB.o bblLSProportionalEB.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o phylipFormat.o phylipFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o maseFormat.o maseFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o clustalFormat.o clustalFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o fastaFormat.o fastaFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o phylipSequentialFormat.o phylipSequentialFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o molphyFormat.o molphyFormat.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o getRandomWeights.o getRandomWeights.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wno-deprecated -I../../src  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o nexusFormat.o nexusFormat.cpp
rm -f libphylo.a
ar cru libphylo.a  alphabet.o sequenceContainer.o sequence.o mulAlphabet.o someUtil.o logFile.o gainLossAlphabet.o pijAccelerator.o replacementModel.o distribution.o readTree.o errorMsg.o nucleotide.o amino.o geneticCodeHolder.o codon.o doubleRep.o evaluateCharacterFreq.o uniDistribution.o generalGammaDistribution.o readDatMatrix.o datMatrixHolder.o chebyshevAccelerator.o nucJC.o aaJC.o gtrModel.o fromQtoPt.o distanceTable.o nj.o njConstrain.o numRec.o uniformDistribution.o computePijComponent.o stochasticProcess.o suffStatComponent.o unObservableData.o likeDist.o countTableComponent.o fastStartTree.o likelihoodComputationFactors.o bestAlpha.o gammaDistribution.o siteSpecificRate.o likelihoodComputation.o recognizeFormat.o bblEM.o hky.o bestGtrModelParams.o tamura92.o bestHKYparam.o bestTamura92param.o talRandom.o computeSubstitutionCounts.o fromCountTableComponentToDistance.o computeCounts.o computeDownAlg.o computeUpAlg.o computeUpAlgFactors.o gammaUtilities.o seqContainerTreeMap.o treeUtil.o matrixUtils.o simulateCodonsJumps.o computePosteriorExpectationOfSubstitutions.o computePosteriorExpectationOfSubstitutions_nonReversibleSp.o multipleStochasticProcess.o simulateJumps.o simulateJumpsAbstract.o treeIt.o likelihoodComputationGL.o tree.o bblEMProportionalEB.o fromCountTableComponentToDistancePropEB.o likeDistPropEB.o bblLSProportionalEB.o phylipFormat.o maseFormat.o clustalFormat.o fastaFormat.o phylipSequentialFormat.o molphyFormat.o getRandomWeights.o nexusFormat.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libphylo.a
make[3]: Leaving directory '/build/rate4site-3.0.0/src/phylogeny'
Making all in src/rate4site
make[3]: Entering directory '/build/rate4site-3.0.0/src/rate4site'
g++ -DHAVE_CONFIG_H -I. -I../..  -DDOUBLEREP   -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o rate4site-rate4siteOptions.o `test -f 'rate4siteOptions.cpp' || echo './'`rate4siteOptions.cpp
g++ -DHAVE_CONFIG_H -I. -I../..  -DDOUBLEREP   -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o rate4site-rate4site.o `test -f 'rate4site.cpp' || echo './'`rate4site.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o rate4siteOptions.o rate4siteOptions.cpp
g++ -DHAVE_CONFIG_H -I. -I../..   -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g -c -o rate4site.o rate4site.cpp
sed -e 's|__pkgdatadir__|/usr/share/rate4site|g;s|__examplesdir__||g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__PACKAGE_VERSION__|3.0.0|g' "rate4site.cpp" | \
pod2man --utf8 -c 'User Commands' -r "3.0.0" -name RATE4SITE > "rate4site.1"
g++ -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g  -Wl,-z,relro -Wl,-z,now -o rate4site_doublerep rate4siteOptions.o rate4site.o ../../src/phylogeny/libphylo.a 
g++ -I../../src/phylogeny/  -g -O2 -fdebug-prefix-map=/build/rate4site-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++98 -g  -Wl,-z,relro -Wl,-z,now -o rate4site rate4site-rate4siteOptions.o rate4site-rate4site.o ../../src/phylogeny/libphylo.a 
make[3]: Leaving directory '/build/rate4site-3.0.0/src/rate4site'
make[3]: Entering directory '/build/rate4site-3.0.0'
make[3]: Leaving directory '/build/rate4site-3.0.0'
make[2]: Leaving directory '/build/rate4site-3.0.0'
make[1]: Leaving directory '/build/rate4site-3.0.0'
   dh_auto_test
	make -j8 check VERBOSE=1
make[1]: Entering directory '/build/rate4site-3.0.0'
Making check in src/phylogeny
make[2]: Entering directory '/build/rate4site-3.0.0/src/phylogeny'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/build/rate4site-3.0.0/src/phylogeny'
Making check in src/rate4site
make[2]: Entering directory '/build/rate4site-3.0.0/src/rate4site'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/build/rate4site-3.0.0/src/rate4site'
make[2]: Entering directory '/build/rate4site-3.0.0'
make[2]: Leaving directory '/build/rate4site-3.0.0'
make[1]: Leaving directory '/build/rate4site-3.0.0'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install
	make -j8 install DESTDIR=/build/rate4site-3.0.0/debian/rate4site AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/rate4site-3.0.0'
Making install in src/phylogeny
make[2]: Entering directory '/build/rate4site-3.0.0/src/phylogeny'
make[3]: Entering directory '/build/rate4site-3.0.0/src/phylogeny'
 /bin/mkdir -p '/build/rate4site-3.0.0/debian/rate4site/usr/lib/aarch64-linux-gnu'
 /usr/bin/install -c -m 644  libphylo.a '/build/rate4site-3.0.0/debian/rate4site/usr/lib/aarch64-linux-gnu'
 /bin/mkdir -p '/build/rate4site-3.0.0/debian/rate4site/usr/include/libphylo'
 /usr/bin/install -c -m 644 replacementMatrixSource/mitochondriaAscidian.code replacementMatrixSource/mitochondriaProtozoan.code replacementMatrixSource/nuclearCiliate.code replacementMatrixSource/mitochondriaEchinoderm.code replacementMatrixSource/mitochondriaVertebrate.code replacementMatrixSource/nuclearEuplotid.code replacementMatrixSource/mitochondriaFlatworm.code replacementMatrixSource/mitochondriaYeast.code replacementMatrixSource/nuclearStandard.code replacementMatrixSource/mitochondriaInvertebrate.code replacementMatrixSource/nuclearBlepharisma.code cpREV45.dat.q dayhoff.dat.q jones.dat.q mtREV24.dat.q wag.dat.q HIVb.dat.q HIVw.dat.q adrianCodon.dat.q LG.dat.q replacementMatrixSource/cpREV45.dat replacementMatrixSource/dayhoff.dat replacementMatrixSource/jones.dat replacementMatrixSource/mtREV24.dat replacementMatrixSource/wag.dat getopt.h errorMsg.h definitions.h doubleRep.h ConversionUtils.h sequenceContainer.h sequence.h alphabet.h mulAlphabet.h someUtil.h logFile.h gainLossAlphabet.h pijAccelerator.h replacementModel.h distribution.h '/build/rate4site-3.0.0/debian/rate4site/usr/include/libphylo'
 /usr/bin/install -c -m 644 readTree.h nucleotide.h amino.h geneticCodeHolder.h codon.h evaluateCharacterFreq.h uniDistribution.h generalGammaDistribution.h readDatMatrix.h datMatrixHolder.h chebyshevAccelerator.h nucJC.h aaJC.h gtrModel.h fromQtoPt.h trivialAccelerator.h distanceMethod.h distanceTable.h nj.h njConstrain.h distances2Tree.h numRec.h uniformDistribution.h checkcovFanctors.h likelihoodComputation.h computePijComponent.h stochasticProcess.h suffStatComponent.h unObservableData.h likeDist.h countTableComponent.h jcDistance.h fastStartTree.h checkcovFanctorsWithFactors.h likelihoodComputationFactors.h bestAlpha.h gammaDistribution.h siteSpecificRate.h recognizeFormat.h bblEM.h '/build/rate4site-3.0.0/debian/rate4site/usr/include/libphylo'
 /usr/bin/install -c -m 644 bestGtrModelParams.h tamura92.h bestHKYparam.h hky.h bestTamura92param.h talRandom.h computeSubstitutionCounts.h fromCountTableComponentToDistance.h computeCounts.h computeDownAlg.h computeUpAlg.h gammaUtilities.h seqContainerTreeMap.h treeUtil.h matrixUtils.h computePosteriorExpectationOfSubstitutions.h computePosteriorExpectationOfSubstitutions_nonReversibleSp.h multipleStochasticProcess.h simulateJumps.h simulateJumpsAbstract.h simulateCodonsJumps.h treeIt.h likelihoodComputationGL.h tree.h bblEMProportionalEB.h fromCountTableComponentToDistancePropEB.h likeDistPropEB.h bblLSProportionalEB.h phylipFormat.h maseFormat.h clustalFormat.h fastaFormat.h phylipSequentialFormat.h molphyFormat.h getRandomWeights.h nexusFormat.h '/build/rate4site-3.0.0/debian/rate4site/usr/include/libphylo'
 ( cd '/build/rate4site-3.0.0/debian/rate4site/usr/lib/aarch64-linux-gnu' && ranlib libphylo.a )
make[3]: Leaving directory '/build/rate4site-3.0.0/src/phylogeny'
make[2]: Leaving directory '/build/rate4site-3.0.0/src/phylogeny'
Making install in src/rate4site
make[2]: Entering directory '/build/rate4site-3.0.0/src/rate4site'
make[3]: Entering directory '/build/rate4site-3.0.0/src/rate4site'
 /bin/mkdir -p '/build/rate4site-3.0.0/debian/rate4site/usr/bin'
 /bin/mkdir -p '/build/rate4site-3.0.0/debian/rate4site/usr/share/man/man1'
  /usr/bin/install -c rate4site rate4site_doublerep '/build/rate4site-3.0.0/debian/rate4site/usr/bin'
 /usr/bin/install -c -m 644 rate4site.1 '/build/rate4site-3.0.0/debian/rate4site/usr/share/man/man1'
make[3]: Leaving directory '/build/rate4site-3.0.0/src/rate4site'
make[2]: Leaving directory '/build/rate4site-3.0.0/src/rate4site'
make[2]: Entering directory '/build/rate4site-3.0.0'
make[3]: Entering directory '/build/rate4site-3.0.0'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/rate4site-3.0.0'
make[2]: Leaving directory '/build/rate4site-3.0.0'
make[1]: Leaving directory '/build/rate4site-3.0.0'
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'rate4site' in '../rate4site_3.0.0-7_arm64.deb'.
dpkg-deb: building package 'rate4site-dbgsym' in '../rate4site-dbgsym_3.0.0-7_arm64.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../rate4site_3.0.0-7_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/12517 and its subdirectories
I: Current time: Fri Jul  9 10:19:46 -12 2021
I: pbuilder-time-stamp: 1625869186
Fri Jul  9 22:19:49 UTC 2021  I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net.
Fri Jul  9 22:19:49 UTC 2021  I: Preparing to do remote build '2' on codethink13-arm64.debian.net.
Fri Jul  9 22:22:37 UTC 2021  I: Deleting $TMPDIR on codethink13-arm64.debian.net.
Fri Jul  9 22:22:38 UTC 2021  I: rate4site_3.0.0-7_arm64.changes:
Format: 1.8
Date: Fri, 27 Nov 2020 18:52:34 +0100
Source: rate4site
Binary: rate4site rate4site-dbgsym
Architecture: arm64
Version: 3.0.0-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 rate4site  - detector of conserved amino-acid sites
Changes:
 rate4site (3.0.0-7) unstable; urgency=medium
 .
   * Standards-Version: 4.5.1 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
   * Use secure URI in Homepage field.
   * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
Checksums-Sha1:
 7be61a706db4b7a0cc5ff2b28a4ebb3ff9b1231a 8664776 rate4site-dbgsym_3.0.0-7_arm64.deb
 dd2cc37bca0f0ab67f4d7907dc3e30cda0ec5805 4847 rate4site_3.0.0-7_arm64.buildinfo
 5de1e4a36c6e1d8ef4a1fd87e41dd75f6eacf660 572292 rate4site_3.0.0-7_arm64.deb
Checksums-Sha256:
 2494384c284bca1cca93f13ac9435b0a22f56e6beef20e8a4a31ab2e2e0b2e21 8664776 rate4site-dbgsym_3.0.0-7_arm64.deb
 9ff99efff402cb29a338483c95eeffad4f5895f7ff7fe030dff59e44bbace6a0 4847 rate4site_3.0.0-7_arm64.buildinfo
 84f9c156181c837f7a801d3829bf540a2896cdd32bfcd92e877ca717536252ab 572292 rate4site_3.0.0-7_arm64.deb
Files:
 a92e11e43f1f77a644b35f412771be03 8664776 debug optional rate4site-dbgsym_3.0.0-7_arm64.deb
 5e92e68b5c46a0930e5ddc1bf56f8961 4847 science optional rate4site_3.0.0-7_arm64.buildinfo
 8757c854e433d699cacab10656eb8c9a 572292 science optional rate4site_3.0.0-7_arm64.deb
Fri Jul  9 22:22:39 UTC 2021  I: diffoscope 177 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/rate4site_3.0.0-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/rate4site_3.0.0-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/rate4site_3.0.0-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/b1/rate4site_3.0.0-7_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.mlKU8H4u54/b2/rate4site_3.0.0-7_arm64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.303s)
       0.302s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.095s)
       0.095s     10 calls    diffoscope.comparators.binary.FilesystemFile
       0.000s      8 calls    abc.DotChangesFile
Fri Jul  9 22:22:40 UTC 2021  I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists.
Fri Jul  9 22:22:40 UTC 2021  I: rate4site from bullseye built successfully and reproducibly on arm64.
Fri Jul  9 22:22:42 UTC 2021  I: Submitting .buildinfo files to external archives:
Fri Jul  9 22:22:42 UTC 2021  I: Submitting 8.0K	b1/rate4site_3.0.0-7_arm64.buildinfo.asc
Fri Jul  9 22:22:44 UTC 2021  I: Submitting 8.0K	b2/rate4site_3.0.0-7_arm64.buildinfo.asc
Fri Jul  9 22:22:45 UTC 2021  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Jul  9 22:22:45 UTC 2021  I: Done submitting .buildinfo files.
Fri Jul  9 22:22:45 UTC 2021  I: Removing signed rate4site_3.0.0-7_arm64.buildinfo.asc files:
removed './b1/rate4site_3.0.0-7_arm64.buildinfo.asc'
removed './b2/rate4site_3.0.0-7_arm64.buildinfo.asc'