Fri Jun 18 03:56:02 UTC 2021 I: starting to build apbs/bullseye/i386 on jenkins on '2021-06-18 03:55' Fri Jun 18 03:56:02 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/10884/console.log Fri Jun 18 03:56:02 UTC 2021 I: Downloading source for bullseye/apbs=3.0.0+dfsg1-3 --2021-06-18 03:56:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/apbs/apbs_3.0.0+dfsg1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2292 (2.2K) Saving to: ‘apbs_3.0.0+dfsg1-3.dsc’ 0K .. 100% 126M=0s 2021-06-18 03:56:02 (126 MB/s) - ‘apbs_3.0.0+dfsg1-3.dsc’ saved [2292/2292] Fri Jun 18 03:56:02 UTC 2021 I: apbs_3.0.0+dfsg1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: apbs Binary: apbs, python3-apbslib, libapbs-dev, libapbs3, apbs-data Architecture: any all Version: 3.0.0+dfsg1-3 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: http://www.poissonboltzmann.org/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/apbs Vcs-Git: https://salsa.debian.org/debichem-team/apbs.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: cmake, debhelper-compat (= 13), dh-python, libmaloc-dev, mpi-default-dev, python3, python3-dev, python3-setuptools, swig, zlib1g-dev Package-List: apbs deb science optional arch=any apbs-data deb science optional arch=all libapbs-dev deb libdevel optional arch=any libapbs3 deb libs optional arch=any python3-apbslib deb python optional arch=any Checksums-Sha1: 976730bac6bbaa26cdef8d0d5be5c1bf3c63240e 90469528 apbs_3.0.0+dfsg1.orig.tar.xz 7fd00c61349ff3e8d4e912871d6b9066b2ef3c50 14280 apbs_3.0.0+dfsg1-3.debian.tar.xz Checksums-Sha256: bbb2b3f7c14773e6c3535a6af6f5ac40370f4fc62e1fb1c2fe7c39051a8cc5cd 90469528 apbs_3.0.0+dfsg1.orig.tar.xz c9573aab7b2d26f4925c82a597bf4658c33dab324a99f245c46247cb8f43ca37 14280 apbs_3.0.0+dfsg1-3.debian.tar.xz Files: 9f14961e11c5da2f3c5e4979ff29a34c 90469528 apbs_3.0.0+dfsg1.orig.tar.xz 6c5ce01351dda9673668ca8af404f631 14280 apbs_3.0.0+dfsg1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAl8ZZG0ACgkQVz7x5L1a AfrqfBAAmumN7x/OQHeUwrF9MD6nv4nvS2qUzcJjsSUPBN7mqrQQFk7377zf05PX ZIlAweH1hnBC3j7Ofg5+onHZXQ5zOQuklKsry/sC9J25ACggDd3uxOXhX1B0K/9W 3o9M+688jVMFvkqNmnOFyzsL5hO5bVoDzuuq4KCUaCUUgol++ARWX1SoOcPlALie 10XN7Jx4+qYvqsslbT5XGHP0ZpPZnIgIWz3kAZtbhlK8LX1NnvUxd+brcQlnJHKH SujUv8TEJj8S3uq3BvHQmcJUNF5QaY/QpoQincN0dRJ/LHOSfSOs3HB2NoaSrwP3 +rL8i+AMY93lolZUTTiZERmgxzbsB0eTKJ/02hJgtECQU66tVYt2xX2BJyh6EqY4 /B5Mynyby4gHByghvNyXBuVE3LUE6iLo2lDJxdybWs/uVuT4v0PItXeq/YUFP/rM 66oQhWL0KW7SsyQRxocTzEovZ0mMPa2+xfSgzNsB9TD+9iYjWrxHVyLflrtOm4g6 Rtw9rvw8J1xYScI74Q1dGfnS2qme5DFU02/vSFeRElfU7SIleGQ0dDu3jNLggwF4 MQ8pb6DR5sffdottNjYKwAht5Xowhf/QZFmSIOX9OU1S+BITCM04fqSWk0+PubDN hhsKV1PqQZI+wKxa+xRCaUmqr0wSEvJZm+5roti04Qj84f+dB60= =sm1b -----END PGP SIGNATURE----- Fri Jun 18 03:56:02 UTC 2021 I: Checking whether the package is not for us Fri Jun 18 03:56:02 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Fri Jun 18 03:56:02 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Fri Jun 18 04:04:42 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. W: cgroups are not available on the host, not using them. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Thu Jun 17 15:56:35 -12 2021 I: pbuilder-time-stamp: 1623988595 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [apbs_3.0.0+dfsg1-3.dsc] I: copying [./apbs_3.0.0+dfsg1.orig.tar.xz] I: copying [./apbs_3.0.0+dfsg1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.QbU6AHeS/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 22 22:20:29 2020 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./apbs_3.0.0+dfsg1-3.dsc dpkg-source: info: extracting apbs in apbs-3.0.0+dfsg1 dpkg-source: info: unpacking apbs_3.0.0+dfsg1.orig.tar.xz dpkg-source: info: unpacking apbs_3.0.0+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying wrong-path-for-interpreter.patch dpkg-source: info: applying debian_testfiles.patch dpkg-source: info: applying debian_make.patch dpkg-source: info: applying fix_spelling_errors.patch dpkg-source: info: applying shared_library_soname.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying link_libapbs_routines.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23123/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23123' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/pbuilderrc_Lkpz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/b1 --logfile b1/build.log apbs_3.0.0+dfsg1-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin total 5792 -rwxr-xr-x 1 root root 1367848 Feb 24 08:57 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 08:57 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 15 21:25 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/23123/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, libmaloc-dev, mpi-default-dev, python3, python3-dev, python3-setuptools, swig, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libmaloc-dev; however: Package libmaloc-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcbor0{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libldap-2.4-2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmaloc-dev{a} libmaloc1{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} procps{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libgpm2 libldap-common libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget xauth 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 68.7 MB of archives. After unpacking 258 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.2-1 [64.6 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.2-1 [275 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.2-1 [75.2 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.56-1 [26.8 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.2-1 [521 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libmaloc1 i386 1.5-1 [73.0 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libmaloc-dev i386 1.5-1 [109 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-10 [2144 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-10 [179 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-10 [209 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-10 [1142 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 124 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-3 [189 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-3 [441 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 swig4.0 i386 4.0.2-1 [1443 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 swig all 4.0.2-1 [330 kB] Fetched 68.7 MB in 25s (2796 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../2-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../4-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20963 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../001-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../006-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../009-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../010-libbsd0_0.11.3-1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_i386.deb ... Unpacking libedit2:i386 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:i386. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_i386.deb ... Unpacking libcbor0:i386 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:i386. Preparing to unpack .../013-libfido2-1_1.6.0-2_i386.deb ... Unpacking libfido2-1:i386 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a8.4p1-5_i386.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../015-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../022-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../023-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../024-libarchive13_3.4.3-2+b1_i386.deb ... Unpacking libarchive13:i386 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../025-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../026-libsasl2-modules-db_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../027-libsasl2-2_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../028-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../029-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../030-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../032-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../033-libcurl4_7.74.0-1.2_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../034-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../035-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../036-libuv1_1.40.0-1_i386.deb ... Unpacking libuv1:i386 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../038-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../039-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../040-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../041-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../042-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../045-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../051-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../052-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../053-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../054-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libgfortran-10-dev:i386. Preparing to unpack .../055-libgfortran-10-dev_10.2.1-6_i386.deb ... Unpacking libgfortran-10-dev:i386 (10.2.1-6) ... Selecting previously unselected package gfortran-10. Preparing to unpack .../056-gfortran-10_10.2.1-6_i386.deb ... Unpacking gfortran-10 (10.2.1-6) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../057-libnl-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../058-libnl-route-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-route-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:i386. Preparing to unpack .../059-libibverbs1_33.2-1_i386.deb ... Unpacking libibverbs1:i386 (33.2-1) ... Selecting previously unselected package ibverbs-providers:i386. Preparing to unpack .../060-ibverbs-providers_33.2-1_i386.deb ... Unpacking ibverbs-providers:i386 (33.2-1) ... Selecting previously unselected package libevent-2.1-7:i386. Preparing to unpack .../061-libevent-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-core-2.1-7:i386. Preparing to unpack .../062-libevent-core-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-core-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:i386. Preparing to unpack .../063-libevent-extra-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:i386. Preparing to unpack .../064-libevent-pthreads-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-openssl-2.1-7:i386. Preparing to unpack .../065-libevent-openssl-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../066-libevent-dev_2.1.12-stable-1_i386.deb ... Unpacking libevent-dev (2.1.12-stable-1) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../067-libexpat1-dev_2.2.10-2_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.10-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../068-libpsm-infinipath1_3.3+20.604758e7-6.1_i386.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... Selecting previously unselected package librdmacm1:i386. Preparing to unpack .../069-librdmacm1_33.2-1_i386.deb ... Unpacking librdmacm1:i386 (33.2-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../070-libfabric1_1.11.0-2_i386.deb ... Unpacking libfabric1 (1.11.0-2) ... Selecting previously unselected package libhwloc15:i386. Preparing to unpack .../071-libhwloc15_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc15:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libnuma1:i386. Preparing to unpack .../072-libnuma1_2.0.12-1+b1_i386.deb ... Unpacking libnuma1:i386 (2.0.12-1+b1) ... Selecting previously unselected package libnuma-dev:i386. Preparing to unpack .../073-libnuma-dev_2.0.12-1+b1_i386.deb ... Unpacking libnuma-dev:i386 (2.0.12-1+b1) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../074-libltdl7_2.4.6-15_i386.deb ... Unpacking libltdl7:i386 (2.4.6-15) ... Selecting previously unselected package libltdl-dev:i386. Preparing to unpack .../075-libltdl-dev_2.4.6-15_i386.deb ... Unpacking libltdl-dev:i386 (2.4.6-15) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../076-libhwloc-dev_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc-dev:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../077-libpciaccess0_0.16-1_i386.deb ... Unpacking libpciaccess0:i386 (0.16-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../078-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../079-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../080-libxcb1_1.14-3_i386.deb ... Unpacking libxcb1:i386 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../081-libx11-data_2%3a1.7.1-1_all.deb ... Unpacking libx11-data (2:1.7.1-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../082-libx11-6_2%3a1.7.1-1_i386.deb ... Unpacking libx11-6:i386 (2:1.7.1-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../083-libxext6_2%3a1.3.3-1.1_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1.1) ... Selecting previously unselected package libxnvctrl0:i386. Preparing to unpack .../084-libxnvctrl0_460.56-1_i386.deb ... Unpacking libxnvctrl0:i386 (460.56-1) ... Selecting previously unselected package ocl-icd-libopencl1:i386. Preparing to unpack .../085-ocl-icd-libopencl1_2.2.14-2_i386.deb ... Unpacking ocl-icd-libopencl1:i386 (2.2.14-2) ... Selecting previously unselected package libhwloc-plugins:i386. Preparing to unpack .../086-libhwloc-plugins_2.4.1+dfsg-1_i386.deb ... Unpacking libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Selecting previously unselected package libnl-3-dev:i386. Preparing to unpack .../087-libnl-3-dev_3.4.0-1+b1_i386.deb ... Unpacking libnl-3-dev:i386 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-dev:i386. Preparing to unpack .../088-libnl-route-3-dev_3.4.0-1+b1_i386.deb ... Unpacking libnl-route-3-dev:i386 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs-dev:i386. Preparing to unpack .../089-libibverbs-dev_33.2-1_i386.deb ... Unpacking libibverbs-dev:i386 (33.2-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../090-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../091-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../092-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../093-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package libmaloc1. Preparing to unpack .../094-libmaloc1_1.5-1_i386.deb ... Unpacking libmaloc1 (1.5-1) ... Selecting previously unselected package libmaloc-dev. Preparing to unpack .../095-libmaloc-dev_1.5-1_i386.deb ... Unpacking libmaloc-dev (1.5-1) ... Selecting previously unselected package libpmix2:i386. Preparing to unpack .../096-libpmix2_4.0.0-4_i386.deb ... Unpacking libpmix2:i386 (4.0.0-4) ... Selecting previously unselected package libopenmpi3:i386. Preparing to unpack .../097-libopenmpi3_4.1.0-10_i386.deb ... Unpacking libopenmpi3:i386 (4.1.0-10) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../098-openmpi-common_4.1.0-10_all.deb ... Unpacking openmpi-common (4.1.0-10) ... Selecting previously unselected package libpmix-dev:i386. Preparing to unpack .../099-libpmix-dev_4.0.0-4_i386.deb ... Unpacking libpmix-dev:i386 (4.0.0-4) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../100-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../101-openmpi-bin_4.1.0-10_i386.deb ... Unpacking openmpi-bin (4.1.0-10) ... Selecting previously unselected package libopenmpi-dev:i386. Preparing to unpack .../102-libopenmpi-dev_4.1.0-10_i386.deb ... Unpacking libopenmpi-dev:i386 (4.1.0-10) ... Selecting previously unselected package libpython3.9:i386. Preparing to unpack .../103-libpython3.9_3.9.2-1_i386.deb ... Unpacking libpython3.9:i386 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:i386. Preparing to unpack .../104-libpython3.9-dev_3.9.2-1_i386.deb ... Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../105-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../106-mpi-default-dev_1.13_i386.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../107-python3.9-dev_3.9.2-1_i386.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../108-python3-dev_3.9.2-3_i386.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../109-python3-pkg-resources_52.0.0-3_all.deb ... Unpacking python3-pkg-resources (52.0.0-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../110-python3-setuptools_52.0.0-3_all.deb ... Unpacking python3-setuptools (52.0.0-3) ... Selecting previously unselected package swig4.0. Preparing to unpack .../111-swig4.0_4.0.2-1_i386.deb ... Unpacking swig4.0 (4.0.2-1) ... Selecting previously unselected package swig. Preparing to unpack .../112-swig_4.0.2-1_all.deb ... Unpacking swig (4.0.2-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libpciaccess0:i386 (0.16-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libcbor0:i386 (0.5.0+dfsg-2) ... Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:i386 (1.40.0-1) ... Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up libx11-data (2:1.7.1-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.2+20201114-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libhwloc15:i386 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:i386 (2.1.12-stable-1) ... Setting up libevent-2.1-7:i386 (2.1.12-stable-1) ... Setting up autopoint (0.21-4) ... Setting up libltdl7:i386 (2.4.6-15) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up libjsoncpp24:i386 (1.9.4-4) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up libnuma1:i386 (2.0.12-1+b1) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:i386 (2.2.14-2) ... Setting up librhash0:i386 (1.4.1-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libnl-3-200:i386 (3.4.0-1+b1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up openmpi-common (4.1.0-10) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:i386 (10.2.1-6) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up swig4.0 (4.0.2-1) ... Setting up libfido2-1:i386 (1.6.0-2) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:i386 (2.0.12-1+b1) ... Setting up libnl-route-3-200:i386 (3.4.0-1+b1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libnl-3-dev:i386 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:i386 (7.74.0-1.2) ... Setting up libx11-6:i386 (2:1.7.1-1) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libmaloc1 (1.5-1) ... Setting up libibverbs1:i386 (33.2-1) ... Setting up ibverbs-providers:i386 (33.2-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:i386 (460.56-1) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:i386 (3.4.0-1+b1) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up cmake (3.18.4-2) ... Setting up libhwloc-dev:i386 (2.4.1+dfsg-1) ... Setting up libmaloc-dev (1.5-1) ... Setting up python3.9 (3.9.2-1) ... Setting up librdmacm1:i386 (33.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libibverbs-dev:i386 (33.2-1) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-3) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-3) ... Setting up libpmix2:i386 (4.0.0-4) ... Setting up libopenmpi3:i386 (4.1.0-10) ... Setting up python3-dev (3.9.2-3) ... Setting up libpmix-dev:i386 (4.0.0-4) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (4.1.0-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/apbs-3.0.0+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 3.0.0+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_clean --sourcedir=apbs make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' dh_clean debian/rules build dh build --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_configure --sourcedir=apbs -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On \ -DBUILD_DOC=Off -DBUILD_TOOLS=On \ -DENABLE_OPENMP=On -DENABLE_MPI=On \ -DENABLE_PYTHON=On -DBUILD_SHARED_LIBS=On \ -DENABLE_READLINE=Off -DENABLE_ZLIB=On \ -DFETK_PATH=/usr -DENABLE_FETK=Off cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On -DBUILD_DOC=Off -DBUILD_TOOLS=On -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_PYTHON=On -DBUILD_SHARED_LIBS=On -DENABLE_READLINE=Off -DENABLE_ZLIB=On -DFETK_PATH=/usr -DENABLE_FETK=Off ../apbs CMake Deprecation Warning at CMakeLists.txt:10 (cmake_policy): The OLD behavior for policy CMP0054 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Checking for MPI -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- MPI support enabled -- Inline functions enabled -- Verbose debugging mode enabled -- Checking for OpenMP -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP support enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;maloc;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;maloc;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;maloc;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;maloc;-fopenmp -- Added apbs_routines -- External Headers: -- -- APBS Libraries: m;stdc++;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so;maloc;-fopenmp -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -- Supplemental tools enabled -- Building mesh -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Building manip -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Found SWIG: /usr/bin/swig4.0 (found version "4.0.2") -- Found Python3: /usr/bin/python3.9 (found version "3.9.2") found components: Interpreter Development Development.Module Development.Embed -- ******* Python3 FOUND -- ***** Python3 include path is: /usr/include/python3.9 -- ***** Python3 library path is: /usr/lib/i386-linux-gnu/libpython3.9.so -- ***** Python3 library dir is: /usr/lib/i386-linux-gnu -- Found Python3: /usr/bin/python3.9 (found version "3.9.2") found components: Interpreter -- ******* Python3 FOUND /usr/bin/python3.9 -- TEST born_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t born -- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t actin-dimer-auto -- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t actin-dimer-parallel -- TEST alkanes_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t alkanes -- TEST FKBP_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t FKBP -- TEST hca-bind_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t hca-bind -- TEST ionize_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t ionize -- TEST ion-pmf_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t ion-pmf -- TEST pka-lig_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t pka-lig -- TEST point-pmf_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t point-pmf -- TEST solv_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t solv -- TEST protein-rna_test COMMAND /usr/bin/python3.9 /build/apbs-3.0.0+dfsg1/apbs/tests/apbs_tester.py -c /build/apbs-3.0.0+dfsg1/apbs/tests/test_cases.cfg -e /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/apbs -t protein-rna -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY ENABLE_READLINE ENABLE_ZLIB FETK_PATH -- Build files have been written to: /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_build --sourcedir=apbs cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-3.0.0+dfsg1/apbs -B/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/CMakeFiles /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbslib_swig_compilation make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build Scanning dependencies of target apbs_generic make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target apbs_pmgc [ 1%] Swig compile apbslib.i for python [ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E make_directory /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/nosh.c [ 3%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/mgparm.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/femparm.c [ 5%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbamparm.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E touch /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o [ 9%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbsamparm.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildBd.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/pbeparm.c [ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildAd.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -python -outdir /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python -interface _apbslib -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -o /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/tools/python/apbslib.i cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/bemparm.c [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/geoflowparm.c [ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/apolparm.c [ 15%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildGd.c [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vacc.c [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/valist.c [ 18%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/buildPd.c [ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vatom.c make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vpbe.c [ 20%] Built target apbslib_swig_compilation [ 22%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/cgd.c [ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vcap.c [ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vclist.c [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vstring.c [ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/gsd.c [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vparam.c [ 29%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cc -Dapbs_generic_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/generic/vgreen.c [ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o [ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/matvecd.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgcsd.c [ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgdrvd.c [ 33%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgsubd.c [ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mikpckd.c [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mlinpckd.c [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mypdec.c [ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/newtond.c [ 39%] Linking C shared library ../../lib/libapbs_generic.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_generic.so.3 -o ../../lib/libapbs_generic.so.3 CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbamparm.c.o CMakeFiles/apbs_generic.dir/pbsamparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/newdrvd.c [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/powerd.c [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/smoothd.c [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/pmgc/mgfasd.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/generic && /usr/bin/cmake -E cmake_symlink_library ../../lib/libapbs_generic.so.3 ../../lib/libapbs_generic.so.3 ../../lib/libapbs_generic.so make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 44%] Built target apbs_generic [ 45%] Linking C shared library ../../lib/libapbs_pmgc.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_pmgc.so.3 -o ../../lib/libapbs_pmgc.so.3 CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/pmgc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_pmgc.so make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 45%] Built target apbs_pmgc make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src/mg /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Scanning dependencies of target apbs_mg make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 46%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vmgrid.c [ 47%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c [ 48%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vopot.c [ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o [ 51%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vpmg.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cc -Dapbs_mg_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/mg/vpmgp.c In file included from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c:57: /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c: In function 'Vgrid_readDX': /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c:751:31: warning: format '%lu' expects argument of type 'long unsigned int *', but argument 3 has type 'size_t *' {aka 'unsigned int *'} [-Wformat=] 751 | VJMPERR1(1 == sscanf(tok, "%lu", &itmp)); | ^~~~~ ~~~~~ | | | size_t * {aka unsigned int *} /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c:751:34: note: format string is defined here 751 | VJMPERR1(1 == sscanf(tok, "%lu", &itmp)); | ~~^ | | | long unsigned int * | %u /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /build/apbs-3.0.0+dfsg1/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Linking C shared library ../../lib/libapbs_mg.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_mg.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_mg.so.3 -o ../../lib/libapbs_mg.so.3 CMakeFiles/apbs_mg.dir/vgrid.c.o CMakeFiles/apbs_mg.dir/vmgrid.c.o CMakeFiles/apbs_mg.dir/vopot.c.o CMakeFiles/apbs_mg.dir/vpmg.c.o CMakeFiles/apbs_mg.dir/vpmgp.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../../lib/libapbs_generic.so.3 ../../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/mg && /usr/bin/cmake -E cmake_symlink_library ../../lib/libapbs_mg.so.3 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_mg.so make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 52%] Built target apbs_mg make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Scanning dependencies of target multivalue Scanning dependencies of target del2dx make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build Scanning dependencies of target smooth Scanning dependencies of target mergedx2 make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build Scanning dependencies of target uhbd_asc2bin make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target dxmath make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target value make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/similarity.dir/depend.internal". make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build Scanning dependencies of target mgmesh make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs_routines.dir/depend.internal". make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target similarity make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 53%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/multivalue.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build [ 54%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o [ 55%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target apbs_routines make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build [ 56%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/smooth.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 58%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dxmath.c [ 59%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mgmesh.c [ 60%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o [ 61%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/similarity.c [ 62%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/value.dir/value.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/value.c cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx2.c [ 63%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -Dapbs_routines_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:89:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fread(buffer, 1, sizeof(char) * 10, pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:97:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(data, tot_grid, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:103:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fread(&scale, 1, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/del2dx.c:106:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(oldmid, 3, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); | ^~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | scanf("%s", newfile); | ^~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fscanf(inFile, "%s", title); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 57 | fscanf(inFile, "%lf", &scale); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 60 | fscanf(inFile, "%lf", &dum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 63 | fscanf(inFile, "%d", &grdflg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | fscanf(inFile, "%d", &idum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fscanf(inFile, "%d", &one); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 84 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fscanf(inFile, "%lf", &h); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fscanf(inFile, "%lf", &ox); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf(inFile, "%lf", &oy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fscanf(inFile, "%lf", &oz); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(inFile, "%lf", &dum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 102 | fscanf(inFile, "%lf", &dum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | fscanf(inFile, "%lf", &dum5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 108 | fscanf(inFile, "%lf", &dum6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fscanf(inFile, "%lf", &dum7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 114 | fscanf(inFile, "%lf", &dum8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fscanf(inFile, "%d", &idum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fscanf(inFile, "%d", &idum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fscanf(inFile, "%d", &kk); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Linking C executable ../bin/mgmesh cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 66%] Linking C executable ../bin/value [ 67%] Linking C executable ../bin/multivalue [ 68%] Linking C executable ../bin/uhbd_asc2bin cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 [ 69%] Linking C executable ../bin/del2dx cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/multivalue.dir/multivalue.c.o -o ../bin/multivalue ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 70%] Linking C executable ../bin/dxmath cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 [ 72%] Linking C executable ../bin/smooth cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 73%] Linking C executable ../bin/similarity [ 73%] Built target value cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 73%] Built target uhbd_asc2bin [ 74%] Linking C executable ../bin/mergedx2 [ 74%] Built target del2dx cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/analysis.dir/depend.internal". [ 74%] Built target multivalue make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= Scanning dependencies of target analysis [ 74%] Built target mgmesh /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". [ 74%] Built target smooth make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build Scanning dependencies of target tensor2dx make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= [ 75%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o [ 75%] Built target dxmath cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c Scanning dependencies of target benchmark make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build Scanning dependencies of target dx2mol make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build [ 76%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/analysis.c Scanning dependencies of target mergedx make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build Scanning dependencies of target dx2uhbd make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 77%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/benchmark.c make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= [ 79%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2mol.c [ 80%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/mergedx.c [ 81%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/dx2uhbd.c [ 79%] Built target similarity make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/born.dir/depend.internal". Scanning dependencies of target born make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip/CMakeFiles/coulomb.dir/depend.internal". make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Scanning dependencies of target coulomb make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 82%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/born.dir/born.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/born.c [ 82%] Built target mergedx2 [ 83%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /build/apbs-3.0.0+dfsg1/apbs/tools/manip/coulomb.c /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Linking C executable ../bin/tensor2dx cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 [ 86%] Linking C executable ../bin/dx2mol cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writematMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 88%] Linking C executable ../bin/benchmark [ 87%] Linking C executable ../bin/dx2uhbd cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 [ 89%] Linking C executable ../bin/analysis cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp [ 90%] Linking C executable ../bin/born cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 [ 91%] Linking C executable ../bin/coulomb /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 91%] Built target tensor2dx make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 91%] Built target benchmark [ 91%] Built target dx2mol make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 91%] Built target born /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writedataMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Built target analysis [ 91%] Built target dx2uhbd [ 91%] Built target coulomb [ 93%] Linking C executable ../bin/mergedx cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs_mg.so.3 ../../lib/libapbs_pmgc.so.3 ../../lib/libapbs_generic.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 93%] Built target mergedx [ 94%] Linking C shared library ../lib/libapbs_routines.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs_routines.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libapbs_routines.so.3 -o ../lib/libapbs_routines.so.3 CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../lib/libapbs_mg.so.3 ../lib/libapbs_generic.so.3 ../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libapbs_routines.so.3 ../lib/libapbs_routines.so.3 ../lib/libapbs_routines.so make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 94%] Built target apbs_routines make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/apbs-3.0.0+dfsg1/apbs /build/apbs-3.0.0+dfsg1/apbs/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/DependInfo.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Scanning dependencies of target apbs make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 95%] Building C object src/CMakeFiles/apbs.dir/main.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/main.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/main.c [ 96%] Building C object src/CMakeFiles/apbs.dir/routines.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cc -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fopenmp -o CMakeFiles/apbs.dir/routines.c.o -c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c /build/apbs-3.0.0+dfsg1/apbs/src/main.c: In function 'main': /build/apbs-3.0.0+dfsg1/apbs/src/main.c:288:64: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 288 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); | ^~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/main.c:288:74: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 288 | Vnm_tprint( 1, "This executable compiled on %s at %s\n\n", __DATE__, __TIME__); | ^~~~~~~~ Scanning dependencies of target _apbslib make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build make[4]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 97%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/build/apbs-3.0.0+dfsg1/apbs/src -I/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src -I/build/apbs-3.0.0+dfsg1/apbs/include -I/usr/include/python3.9 -I/build/apbs-3.0.0+dfsg1/apbs/tools/python -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writematMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c: In function 'writedataMG': /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /build/apbs-3.0.0+dfsg1/apbs/src/apbs.h:67, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.h:64, from /build/apbs-3.0.0+dfsg1/apbs/src/routines.c:54: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Linking C executable ../bin/apbs cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-as-needed -rdynamic CMakeFiles/apbs.dir/main.c.o CMakeFiles/apbs.dir/routines.c.o -o ../bin/apbs -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../lib/libapbs_routines.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../lib/libapbs_mg.so.3 ../lib/libapbs_generic.so.3 ../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [ 98%] Built target apbs [100%] Linking C shared library ../../lib/_apbslib.so cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_apbslib.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/build/apbs-3.0.0+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fcommon -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,_apbslib.so -o ../../lib/_apbslib.so CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp ../../lib/libapbs_routines.so.3 /usr/lib/i386-linux-gnu/libpython3.9.so ../../lib/libapbs_mg.so.3 ../../lib/libapbs_generic.so.3 ../../lib/libapbs_pmgc.so.3 -lm -lstdc++ /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -lmaloc -fopenmp cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E copy /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python/apbslib.py /build/apbs-3.0.0+dfsg1/apbs/../pdb2pqr/pdb2pka cd /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/tools/python && /usr/bin/cmake -E copy /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/lib/_apbslib.so /build/apbs-3.0.0+dfsg1/apbs/../pdb2pqr/pdb2pka make[4]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' [100%] Built target _apbslib make[3]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' (cd apbs/tests; PATH=/build/apbs-3.0.0+dfsg1/obj-i386-linux-gnu/bin:${PATH} LD_LIBRARY_PATH=/build/apbs-3.0.0+dfsg1/obj-i386-linux-gnu/lib:${LD_LIBRARY_PATH} PYTHONPATH=${PYTHONPATH}:/build/apbs-3.0.0+dfsg1/apbs/tools/manip python3 apbs_tester.py -c test_cases.cfg; rm -rf __pycache__) Usage: apbs_tester.py [options] apbs_tester.py: error: Coulnd't detect an apbs binary in the path or local bin directory make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 dh_testroot dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_auto_install --sourcedir=apbs --destdir=/build/apbs-3.0.0+dfsg1/debian/tmp/ cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/apbs-3.0.0\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/apbs-3.0.0+dfsg1/apbs -B/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/ReleaseNotes.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/ChangeLog.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_512.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_128_v2.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_64.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_32.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_16.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_128.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_256.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/icons/APBS_1024.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/README -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/protege.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/data-ontology.ttl -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/data-ontology/catalog-v001.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/doc/release_procedure.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/toy_energyforce.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/1a63.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_1.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_2.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/pos_1.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_charge.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/pos_3.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/toy_dynamics.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/pos_2.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/1a63.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/toy_electrostatic.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/pos_charge.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbam/neg_3.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_bin_apbs.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-mol-surf.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_lig_apbs.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-smol-vdw.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-smol-surf.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-bin.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-lig.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-bin.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/README -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-lig.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd2-apo.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/UHBD/uhbd1-apo.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/bx6_7_apo_apbs.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pka-lig/apbs-mol-vdw.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/451c_order1.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/451c_order5.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/1a63_NanoShaper_Skin.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/twob2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1bbl.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/twob.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1a63.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/1ajj.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/oneb.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/test_proteins/451c.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/1a63_NanoShaper_SES.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem/1a63_msms.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/membrane -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/membrane/readme.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/membrane/memv.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/membrane/pot.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/fas2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/mache.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/achbp.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/apbs.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/param.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/misc/apbs-PDB.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/glycerol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/1a63.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/gly.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/gly.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/imidazole.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/1a63.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/geoflow/imidazole_zap.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-mol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-min.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/dss-min.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss-smol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-smol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-mol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-dmso-complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/dmso-min.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/FKBP/1d7h-min.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/mol2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_1.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/point-pmf-0.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_3.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/energy.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/mol0.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_2.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/mol1.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/mol3.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/runme.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/apbs.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_3.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/mol4.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_1.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/point-pmf/complex-0_4.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30_monomer2.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30_monomer1.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/test_proteins/1d30.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-binding-energy/1d30.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/small491.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-mol-pdiel2.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-smol-pdiel12.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-mol-pdiel12.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/491.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/UHBD/small491.e2.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/apbs-smol-pdiel2.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-protein/491.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/mesh.m -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/acet.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-mol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/hca.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/srsrf.dot -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf2.err -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.out -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf2.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf1.qcd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/UHBD/bindf-nmap.err -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/hca-bind/apbs-smol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe/ion.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe/readme.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe/24dup.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe/apbs-smpbe-ion.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/smpbe/apbs-smpbe-24dup.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-ASP66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/ASP66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-ASH66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-noASP66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/ASH66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/test_proteins/ASP66.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/ASH66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/bem-pKa/2LZT-noASH66.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/apbs-mol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/proton.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/proton.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/acetic-acid.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.inp.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.out.orig.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.pdb.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/UHBD/elec.dat.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/acetic-acid.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/acetate.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/acetate.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ionize/apbs-smol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/complex.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/polarforces -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/parm.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/runme.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/ion-pmf.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/ion-pmf/apolarforces -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/actin-dimer-para.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/actin-dimer.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/actin-mol1.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/actin-complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/actin-mol2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/opal/born.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-apolar.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/mesh.m -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem-extmesh.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/ion.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-smol-auto.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/polarforces -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/ion.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-mol-auto.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/parm.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/pmf.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-smol-fem.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-mol-fem.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-forces.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apolarforces -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-mol-parallel.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/born/apbs-smol-parallel.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-0.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Apbs_dummy-TEMPLATE.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Run_membrane-helix.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Apbs_solv-TEMPLATE.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-16.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-12.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Apbs_dummy.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-8.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/draw_membrane2.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/helix/Membrane-helix-4.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_energyforce.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_dynamics.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_1_1.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_1_2.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_cg.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_cg2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_2_2.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/traj_2_1.xyz -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly.vert -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms/gly_msms.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/msms/gly_electrostatic.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-gly/gly_electrostatic.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barn_bars_electro.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barnase.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/pbsam-barn_bars/barstar.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/Makefile.am -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/methoxide.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/methanol.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/apbs-mol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.inp.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.out.orig.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/UHBD/solv.dat.exam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/Makefile.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/solv/apbs-smol.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/fit.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/model_outBoxB19.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/model_outNpep.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/Makefile.am -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/dxmath.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/postprocess.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/model_outNB.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/test.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/Makefile.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/apbs_dx.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/PDB -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outNpep.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outNB.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/PDB/model_outBoxB19.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/run_apdx_files.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/protein-rna/template.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/cyclohexane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/2-methylbutane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/butane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/parm.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/methane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/mol.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/propane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/ethane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/neopentane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/isobutane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/hexane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/pentane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/apbs-forces.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/Makefile.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/alkanes.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/force.result -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/alkanes/cyclopentane.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/README.md -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/mesh.m -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/mol2.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-smol-auto.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-mol-auto.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/complex.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/mol1.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/prot3.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/srsrf.dot -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/prot4.pdb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/UHBD/single.inp -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-mol-parallel.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/examples/actin-dimer/apbs-smol-parallel.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/apbs_check_intermediate_energies.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/apbs_check_forces.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/test_cases.cfg -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/apbs_check_results.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/apbs_tester.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tests/apbs_logger.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mergedx.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mgmesh.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/tensor2dx.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/similarity.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dx2uhbd.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dx2mol.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/uhbd_asc2bin.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/benchmark.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/analysis.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/value.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/mergedx2.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/dxmath.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/CMakeLists.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/smooth.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/multivalue.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/mesh/del2dx.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/psize.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/inputgen.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/born.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/__pycache__ -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/__pycache__/inputgen.cpython-39.pyc -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/__pycache__/psize.cpython-39.pyc -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/CMakeLists.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/manip/coulomb.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/configuration headers -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/configuration headers/maloccf.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/configuration headers/apbscfg.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/command-line support -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/command-line support/apbs-cli.bat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Debug build properties.props -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Release build properties.props -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/visual studio property pages/Generic build properties.props -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/NSI configuration -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/NSI configuration/apbs.nsi -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/windows/README.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/ion.pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile.am -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/average.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/README -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/mergedx.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/vgrid.i -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/vgridlib.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/vgrid.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/read.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/vgrid/Makefile.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/Makefile.am -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/apbslib.i -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/apbslib.c -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/README -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/apbslib_wrap.doc -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/CMakeLists.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/apbs.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/Makefile -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/noinput.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/Makefile.in -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/python/main.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/github -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/github/getReleases.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/github/release-data.py -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.net -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.net -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cm -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cm -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.net -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/multipot.cfg -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/pot.cfg -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.net -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/surface.cfg -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/visualization/opendx/potacc.cfg -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/README.html -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/CMakeLists.txt -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_256x256@2x.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_512x512@2x.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_256x256.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_512x512.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_16x16.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_128x128.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_16x16@2x.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_32x32@2x.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_128x128@2x.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/APBS.iconset/icon_32x32.png -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/info.plist -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/patch_binary.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/osx/apbs_term -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/amber2charmm.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/qcd2pqr.awk -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/vparam -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/vparam/vparam-amber-parm94.xml -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/vparam/vparam-amber-parm94.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/weiner86-param.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/c-alpha.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/amber-param.dat -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/param/pdb2pqr/amber2uhbd.sh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/conversion/WHATIF2AMBER.sed -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/smooth -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dxmath -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/tensor2dx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/coulomb -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2mol -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/multivalue -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/del2dx -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/born -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/similarity -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mergedx2 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/uhbd_asc2bin -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/value -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/analysis -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/benchmark -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/mgmesh -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_routines.so.3 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_routines.so -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/apbs.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/routines.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/bin/apbs -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/nosh.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/mgparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/femparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/pbamparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/pbsamparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/pbeparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/bemparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/geoflowparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/apolparm.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vacc.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/valist.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vatom.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vpbe.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vcap.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vclist.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vstring.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vparam.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vgreen.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vmatrix.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vhal.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/generic/vunit.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_generic.so.3 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_generic.so -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/buildAd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/buildBd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/buildGd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/buildPd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/cgd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/gsd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/matvecd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mgcsd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mgdrvd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mgsubd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mikpckd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mlinpckd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mypdec.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/newtond.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/newdrvd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/powerd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/smoothd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/pmgc/mgfasd.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_pmgc.so.3 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_pmgc.so -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/mg/vgrid.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/mg/vmgrid.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/mg/vopot.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/mg/vpmg.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/include/apbs/mg/vpmgp.h -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_mg.so.3 -- Installing: /build/apbs-3.0.0+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libapbs_mg.so make[2]: Leaving directory '/build/apbs-3.0.0+dfsg1/obj-i686-linux-gnu' make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 I: dh_python3 fs:343: renaming _apbslib.so to _apbslib.cpython-39-i386-linux-gnu.so dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/apbs-3.0.0+dfsg1' dh_fixperms for example in FKBP/1d7h-dmso/UHBD/pqr2qcd \ ion-pmf/runme.sh \ point-pmf/runme.sh \ protein-rna/postprocess.sh \ protein-rna/test.sh \ helix/Run_membrane-helix.sh \ protein-rna/run_apdx_files.sh; \ do \ chmod +x debian/apbs-data/usr/share/apbs/examples/${example}; \ done for script in amber2charmm.sh \ param/pdb2pqr/amber2uhbd.sh \ qcd2pqr.awk; \ do \ chmod a+x debian/apbs-data/usr/share/apbs/tools/conversion/${script}; \ done make[1]: Leaving directory '/build/apbs-3.0.0+dfsg1' dh_fixperms -Napbs-data dh_missing dh_dwz -a dwz: debian/libapbs3/usr/lib/i386-linux-gnu/libapbs_pmgc.so.3: DWARF compression not beneficial - old size 116111 new size 116645 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libapbs3/usr/lib/i386-linux-gnu/libapbs_generic.so.3 was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/bin/apbs was not linked against libapbs_routines.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libmpi.so.40 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libapbs_pmgc.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libstdc++.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apbs/usr/lib/apbs/tools/bin/bin/coulomb debian/apbs/usr/lib/apbs/tools/bin/bin/del2dx debian/apbs/usr/lib/apbs/tools/bin/bin/dxmath debian/apbs/usr/lib/apbs/tools/bin/bin/multivalue debian/apbs/usr/lib/apbs/tools/bin/bin/similarity debian/apbs/usr/lib/apbs/tools/bin/bin/mgmesh debian/apbs/usr/bin/apbs debian/apbs/usr/lib/apbs/tools/bin/bin/dx2mol debian/apbs/usr/lib/apbs/tools/bin/bin/smooth debian/apbs/usr/lib/apbs/tools/bin/bin/analysis debian/apbs/usr/lib/apbs/tools/bin/bin/tensor2dx debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx debian/apbs/usr/lib/apbs/tools/bin/bin/value debian/apbs/usr/lib/apbs/tools/bin/bin/benchmark debian/apbs/usr/lib/apbs/tools/bin/bin/uhbd_asc2bin debian/apbs/usr/lib/apbs/tools/bin/bin/born debian/apbs/usr/lib/apbs/tools/bin/bin/mergedx2 debian/apbs/usr/lib/apbs/tools/bin/bin/dx2uhbd were not linked against libgomp.so.1 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libapbs-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-apbslib: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libapbs3' in '../libapbs3_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'python3-apbslib-dbgsym' in '../python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'libapbs3-dbgsym' in '../libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'apbs' in '../apbs_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'apbs-dbgsym' in '../apbs-dbgsym_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'apbs-data' in '../apbs-data_3.0.0+dfsg1-3_all.deb'. dpkg-deb: building package 'python3-apbslib' in '../python3-apbslib_3.0.0+dfsg1-3_i386.deb'. dpkg-deb: building package 'libapbs-dev' in '../libapbs-dev_3.0.0+dfsg1-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../apbs_3.0.0+dfsg1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23123 and its subdirectories I: Current time: Thu Jun 17 16:04:41 -12 2021 I: pbuilder-time-stamp: 1623989082 Fri Jun 18 04:04:43 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Jun 18 04:04:43 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Jun 18 04:05:57 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Jun 18 04:05:57 UTC 2021 I: apbs_3.0.0+dfsg1-3_i386.changes: Format: 1.8 Date: Thu, 23 Jul 2020 17:35:23 +0800 Source: apbs Binary: apbs apbs-data apbs-dbgsym libapbs-dev libapbs3 libapbs3-dbgsym python3-apbslib python3-apbslib-dbgsym Architecture: all i386 Version: 3.0.0+dfsg1-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: apbs - Adaptive Poisson Boltzmann Solver apbs-data - data files for APBS (Adaptive Poisson Boltzmann Solver) libapbs-dev - Adaptive Poisson Boltzmann Solver libapbs3 - Adaptive Poisson Boltzmann Solver python3-apbslib - Adaptive Poisson Boltzmann Solver Closes: 956998 Changes: apbs (3.0.0+dfsg1-3) unstable; urgency=medium . * Team upload. * use -fcommon in CFLAGS to aid build with gcc-10 (managing multiple definitions of common variables). Closes: #956998. * provide python path to inputgen for build-time tests Checksums-Sha1: 17b4a7556cadab48d219f68ec9183e2e3e43cb9e 1212604 apbs-data_3.0.0+dfsg1-3_all.deb 3606f130d72c3f2fe4fbd2f1f6d6099fd102bc58 129900 apbs-dbgsym_3.0.0+dfsg1-3_i386.deb d405ca82792302c55087c474ac82878261f8d4fe 9855 apbs_3.0.0+dfsg1-3_i386.buildinfo db0aeac3fffb58c820bb375c0349bf543ad66ff6 85388 apbs_3.0.0+dfsg1-3_i386.deb 0f0dad9a815b5e4362c6ad9a86d225a709e84b19 66312 libapbs-dev_3.0.0+dfsg1-3_i386.deb 0704a85ce9f1e6d883500a0f3ebeee6270606cbc 433376 libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb f6a2ca0bfd1156f0ca84d1b114c9ca3d0be2064e 230844 libapbs3_3.0.0+dfsg1-3_i386.deb 0a8768241312c46757d6cb12637a6027ae8d5007 139288 python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb 6e2341b1a2bc11111e08be1deebc4ded67796dae 101404 python3-apbslib_3.0.0+dfsg1-3_i386.deb Checksums-Sha256: 5ce1ba924ec27bdf78ae3e0d4234acee8f66624c2e2fe8fadfc26aac3db7a0de 1212604 apbs-data_3.0.0+dfsg1-3_all.deb b4682b32ce8750cad6f13377f1b82b17fab6a5c71afe37bb0b3c7a0bdf4d3728 129900 apbs-dbgsym_3.0.0+dfsg1-3_i386.deb dc7d5a86bd9a546e2c3f17e2ef3fc00d7edc4a7ff01889ef59e6e4cfc0f31530 9855 apbs_3.0.0+dfsg1-3_i386.buildinfo 4104adb2286f0edf3289bd01af62de5a05923c4a1de82cf732b2cb4ba6d6bf0b 85388 apbs_3.0.0+dfsg1-3_i386.deb 106fc41cc0057a535265cb64e6938ccd60fc13fa564c711870b21de2eb8486ef 66312 libapbs-dev_3.0.0+dfsg1-3_i386.deb 4fce9065b5c15eba90fa45a52376d384d36180f093efd01a5a507e703335117a 433376 libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb cec807fd7475634ea6da82847c236c46c0dc1e7a3050e209f7c7f2c0a4dbe1c5 230844 libapbs3_3.0.0+dfsg1-3_i386.deb 0fe938ed256e27b3ec5e6b29466f61619f607ce3e8417aeb522346c2aef69116 139288 python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb 57294430bb50058b75a7b67f48e58e44e2e25066b7f390fc4eba6369ac8cba5c 101404 python3-apbslib_3.0.0+dfsg1-3_i386.deb Files: 3e077097b13fb8cc888405869a8a0fbc 1212604 science optional apbs-data_3.0.0+dfsg1-3_all.deb d78de1e02e2e3013bd15de69e1fc3a54 129900 debug optional apbs-dbgsym_3.0.0+dfsg1-3_i386.deb c7cb977f1b0d43c762d259861e410d59 9855 science optional apbs_3.0.0+dfsg1-3_i386.buildinfo 6aef163975de5acaa3b21bef389e2123 85388 science optional apbs_3.0.0+dfsg1-3_i386.deb 3e0f5f5668852eb2500c9aaecb5b7805 66312 libdevel optional libapbs-dev_3.0.0+dfsg1-3_i386.deb 86ab331c92dfad3c2659806caa151337 433376 debug optional libapbs3-dbgsym_3.0.0+dfsg1-3_i386.deb 23c5880f182fd1791453a8166ffa1bc4 230844 libs optional libapbs3_3.0.0+dfsg1-3_i386.deb 4502e2d67ccc6819c9a8d928641e1543 139288 debug optional python3-apbslib-dbgsym_3.0.0+dfsg1-3_i386.deb 76be4c7fd3dfe98056cbfb0930ab1a3e 101404 python optional python3-apbslib_3.0.0+dfsg1-3_i386.deb Fri Jun 18 04:05:58 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/apbs_3.0.0+dfsg1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/apbs_3.0.0+dfsg1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/apbs_3.0.0+dfsg1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/b1/apbs_3.0.0+dfsg1-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.6ziVMcO4yc/b2/apbs_3.0.0+dfsg1-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.282s) 0.282s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jun 18 04:05:59 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 18 04:05:59 UTC 2021 I: apbs from bullseye built successfully and reproducibly on i386. Fri Jun 18 04:06:01 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jun 18 04:06:01 UTC 2021 I: Submitting 12K b1/apbs_3.0.0+dfsg1-3_i386.buildinfo.asc Fri Jun 18 04:06:02 UTC 2021 I: Submitting 12K b2/apbs_3.0.0+dfsg1-3_i386.buildinfo.asc Fri Jun 18 04:06:03 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 18 04:06:03 UTC 2021 I: Done submitting .buildinfo files. Fri Jun 18 04:06:03 UTC 2021 I: Removing signed apbs_3.0.0+dfsg1-3_i386.buildinfo.asc files: removed './b1/apbs_3.0.0+dfsg1-3_i386.buildinfo.asc' removed './b2/apbs_3.0.0+dfsg1-3_i386.buildinfo.asc'