Mon Jul 5 14:10:53 UTC 2021 I: starting to build dssp/bullseye/i386 on jenkins on '2021-07-05 14:10' Mon Jul 5 14:10:53 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/15324/console.log Mon Jul 5 14:10:53 UTC 2021 I: Downloading source for bullseye/dssp=4.0.0-2 --2021-07-05 14:10:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dssp/dssp_4.0.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2077 (2.0K) Saving to: ‘dssp_4.0.0-2.dsc’ 0K .. 100% 164M=0s 2021-07-05 14:10:53 (164 MB/s) - ‘dssp_4.0.0-2.dsc’ saved [2077/2077] Mon Jul 5 14:10:53 UTC 2021 I: dssp_4.0.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 4.0.0-2 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/dssp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), autoconf-archive, pkg-config, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: 981260a2b8cd67ef536afac1bbc0ff53aca5db15 658085 dssp_4.0.0.orig.tar.gz 35dc8fb7435843bd0aa254359f8ae3b29d23b139 5440 dssp_4.0.0-2.debian.tar.xz Checksums-Sha256: b415b63c1985edb0d1359d08bd6a2d9bd8cb4fc4532ecdc805774d3c72a0de72 658085 dssp_4.0.0.orig.tar.gz 96471530d57b61cdfb2abaee49e10cfab954b30933e5cb17026e798ec0270ce1 5440 dssp_4.0.0-2.debian.tar.xz Files: 97b4188a632784d81c1f442d7ef59c7f 658085 dssp_4.0.0.orig.tar.gz 292af41637768273ebbf7a5de10a5cbd 5440 dssp_4.0.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/caQ0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEIxQ//fPdxBzknjsGEdOPhit8sofayYotL9Qky EkWbOsuCz3zMmnW0RdVg72lK1LOHuSh1a8Q2B9Sbbmw1kmKI60hlG4Txfmj9E/t5 5t5ZvuiG1OfPNBl08hzrVTH/CR6tw3LXKsOsvKkw3Z9pKz5tFDmR6WPQWkKdBjQx yAGKAHfafNMLW7VXR3ffzPdKXIOhesylkhej6RC0PZPzglJ+r3+kJMBzoYb5fUD5 4tqdvwbHXPf0gSvVQzwp0Ivt2wdfQgnkynHwOSRsmUJgor+hNPerrAIV8v/8on47 ZsH+3Sm4/X9BwLmkKseDeTVW6YloPdqtA0+dOeZFskTsj5cCPCBGumLQ2q3CCNac zBbUFcogPPE3VOVwM8buTGD53Th0pu918X1TCKqYOs+Ovy+mEmcEZQF/JNj0h6TZ IgxC7rMZstNxEH7dZMGH2pIt8LePASUEodNIxPZhoXn3ao2popX0Oeo1mT7FzaiJ 6WdS1PT2yV6stG9E3Iyj/jjx4Cm9f8jfYpQ3epYrqwBHGs2KPz0SVltBx+3VfIWQ X7k81M4Q2nDCrWAMKFMu2AAYhRfqQ8FYHc2tmXoADoGHK6ja8QbF0eVGrNI3ikrH UQ+pffhzdVrYPzMWy0sGqGFkCCMrT/HGVie+yYAXstVvhOG2848yG9Nf8RZ+j88A ljXjP4ImaKI= =oAmY -----END PGP SIGNATURE----- Mon Jul 5 14:10:53 UTC 2021 I: Checking whether the package is not for us Mon Jul 5 14:10:53 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Jul 5 14:10:53 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Jul 5 14:18:23 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 5 02:10:55 -12 2021 I: pbuilder-time-stamp: 1625494255 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dssp_4.0.0-2.dsc] I: copying [./dssp_4.0.0.orig.tar.gz] I: copying [./dssp_4.0.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.fgprV9Cl/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 17 20:32:13 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dssp_4.0.0-2.dsc dpkg-source: info: extracting dssp in dssp-4.0.0 dpkg-source: info: unpacking dssp_4.0.0.orig.tar.gz dpkg-source: info: unpacking dssp_4.0.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-patch dpkg-source: info: applying makefile dpkg-source: info: applying configure-patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32765/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='33aa35527df24c3693f9992e1ee564dc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32765' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/pbuilderrc_5YVn --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/b1 --logfile b1/build.log dssp_4.0.0-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux I: ls -l /bin total 5788 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 3 21:29 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/32765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), autoconf-archive, pkg-config, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev; however: Package libcifpp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libcifpp-dev{a} libcifpp1{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu-dev{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After unpacking 288 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 autoconf-archive all 20190106-2.1 [746 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-6 [209 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-6 [9799 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 40 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 43 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libboost-system-dev i386 1.74.0.3 [4472 B] Get: 46 http://deb.debian.org/debian bullseye/main i386 libcifpp1 i386 1.0.1-3 [1512 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libcifpp-dev i386 1.0.1-3 [65.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Fetched 44.6 MB in 14s (3165 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../05-autoconf-archive_20190106-2.1_all.deb ... Unpacking autoconf-archive (20190106-2.1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... 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Unpacking libboost-system1.74-dev:i386 (1.74.0-9) ... Selecting previously unselected package libboost-system-dev:i386. Preparing to unpack .../44-libboost-system-dev_1.74.0.3_i386.deb ... Unpacking libboost-system-dev:i386 (1.74.0.3) ... Selecting previously unselected package libcifpp1. Preparing to unpack .../45-libcifpp1_1.0.1-3_i386.deb ... Unpacking libcifpp1 (1.0.1-3) ... Selecting previously unselected package libcifpp-dev. Preparing to unpack .../46-libcifpp-dev_1.0.1-3_i386.deb ... Unpacking libcifpp-dev (1.0.1-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../47-libglib2.0-0_2.66.8-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.66.8-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../48-pkg-config_0.29.2-1_i386.deb ... Unpacking pkg-config (0.29.2-1) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libboost-system1.74.0:i386 (1.74.0-9) ... Setting up libboost1.74-dev:i386 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:i386 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up autoconf-archive (20190106-2.1) ... Setting up file (1:5.39-3) ... Setting up libboost-program-options1.74-dev:i386 (1.74.0-9) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libboost-program-options-dev:i386 (1.74.0.3) ... Setting up libboost-system1.74-dev:i386 (1.74.0-9) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libboost-regex1.74.0:i386 (1.74.0-9) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-6) ... Setting up pkg-config (0.29.2-1) ... Setting up libcifpp1 (1.0.1-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libicu-dev:i386 (67.1-6) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libboost-system-dev:i386 (1.74.0.3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up libcifpp-dev (1.0.1-3) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:i386 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dssp-4.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 4.0.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dssp-4.0.0' dh_auto_configure -- --disable-resources --disable-revision ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-resources --disable-revision checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ supports C++17 features with -std=c++17... yes checking whether C++ compiler accepts -fstandalone-debug... no checking for a BSD-compatible install... /usr/bin/install -c checking for mrc... no configure: WARNING: The mrc application was not found, not using resources. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for a sed that does not truncate output... /bin/sed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking how to run the C++ preprocessor... g++ -std=c++17 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking filesystem usability... yes checking filesystem presence... yes checking for filesystem... yes checking for boostlib >= 1.65.1 (106501)... yes checking whether the Boost::IOStreams library is available... yes checking for exit in -lboost_iostreams... yes checking whether the Boost::Program_Options library is available... yes checking for exit in -lboost_program_options... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for pkg-config... /usr/bin/pkg-config checking for libcifpp ... yes configure: creating ./config.status config.status: creating GNUmakefile config.status: creating src/config.hpp make[1]: Leaving directory '/build/dssp-4.0.0' dh_auto_build make -j10 make[1]: Entering directory '/build/dssp-4.0.0' mkdir -p obj >> src/dssp.cpp -> mkdssp make[1]: Leaving directory '/build/dssp-4.0.0' dh_auto_test make -j10 test VERBOSE=1 make[1]: Entering directory '/build/dssp-4.0.0' obj/dssp.o make[1]: Leaving directory '/build/dssp-4.0.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j10 install DESTDIR=/build/dssp-4.0.0/debian/dssp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/dssp-4.0.0' install -d /build/dssp-4.0.0/debian/dssp/usr/bin install mkdssp /build/dssp-4.0.0/debian/dssp/usr/bin/mkdssp install -d /build/dssp-4.0.0/debian/dssp/usr/share/man/man1 install -m 644 mkdssp.1 /build/dssp-4.0.0/debian/dssp/usr/share/man/man1/mkdssp.1; gzip /build/dssp-4.0.0/debian/dssp/usr/share/man/man1/mkdssp.1; make[1]: Leaving directory '/build/dssp-4.0.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_4.0.0-2_i386.deb'. dpkg-deb: building package 'dssp' in '../dssp_4.0.0-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dssp_4.0.0-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32765 and its subdirectories I: Current time: Mon Jul 5 02:18:22 -12 2021 I: pbuilder-time-stamp: 1625494702 Mon Jul 5 14:18:23 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Mon Jul 5 14:18:23 UTC 2021 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Mon Jul 5 14:19:16 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. Mon Jul 5 14:19:16 UTC 2021 I: dssp_4.0.0-2_i386.changes: Format: 1.8 Date: Fri, 18 Dec 2020 07:42:13 +0100 Source: dssp Binary: dssp dssp-dbgsym Architecture: i386 Version: 4.0.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: dssp - protein secondary structure assignment based on 3D structure Closes: 977618 Changes: dssp (4.0.0-2) unstable; urgency=medium . * Make build reproducible, Closes: #977618 Checksums-Sha1: 402075057c05bab218150ed8b9054b6adf97be39 1609744 dssp-dbgsym_4.0.0-2_i386.deb 818b79a0766a4ca9fc5317183d69b792cc2ebbb8 5486 dssp_4.0.0-2_i386.buildinfo 061d0bb95d0dc3f619a23b495b3d7cdb8565d7d5 134484 dssp_4.0.0-2_i386.deb Checksums-Sha256: b7dda1786aa9d2e9badf47f9a8b29597595d120080ae9a81e6f242b1a82fa565 1609744 dssp-dbgsym_4.0.0-2_i386.deb fa7e8e4cbdbb5a6c973f2b5093f8a913184f11edad90299587071b5a95475517 5486 dssp_4.0.0-2_i386.buildinfo 81121b4ad46ef024f99563f860e492512d0af8a611f8eccc96d29ab371ec1d6c 134484 dssp_4.0.0-2_i386.deb Files: bc10c1debb36e95c28b345006d04d180 1609744 debug optional dssp-dbgsym_4.0.0-2_i386.deb dc9335ba3722c8d952d9c383001e210a 5486 science optional dssp_4.0.0-2_i386.buildinfo a0239edf2a4538080a55822d99a6f04b 134484 science optional dssp_4.0.0-2_i386.deb Mon Jul 5 14:19:18 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/dssp_4.0.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/dssp_4.0.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/dssp_4.0.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/b1/dssp_4.0.0-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.0UFC3qmqx5/b2/dssp_4.0.0-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.371s) 0.371s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 5 14:19:19 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 5 14:19:19 UTC 2021 I: dssp from bullseye built successfully and reproducibly on i386. Mon Jul 5 14:19:21 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 5 14:19:21 UTC 2021 I: Submitting 8.0K b1/dssp_4.0.0-2_i386.buildinfo.asc Mon Jul 5 14:19:22 UTC 2021 I: Submitting 8.0K b2/dssp_4.0.0-2_i386.buildinfo.asc Mon Jul 5 14:19:23 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 5 14:19:23 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 5 14:19:23 UTC 2021 I: Removing signed dssp_4.0.0-2_i386.buildinfo.asc files: removed './b1/dssp_4.0.0-2_i386.buildinfo.asc' removed './b2/dssp_4.0.0-2_i386.buildinfo.asc'