Fri Aug 13 01:04:34 UTC 2021 I: starting to build meep/bullseye/i386 on jenkins on '2021-08-13 01:04' Fri Aug 13 01:04:34 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/20367/console.log Fri Aug 13 01:04:34 UTC 2021 I: Downloading source for bullseye/meep=1.17.1-1 --2021-08-13 01:04:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/meep/meep_1.17.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2410 (2.4K) Saving to: ‘meep_1.17.1-1.dsc’ 0K .. 100% 184M=0s 2021-08-13 01:04:34 (184 MB/s) - ‘meep_1.17.1-1.dsc’ saved [2410/2410] Fri Aug 13 01:04:34 UTC 2021 I: meep_1.17.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: meep Binary: meep, libmeep23, libmeep-dev, python3-meep Architecture: any Version: 1.17.1-1 Maintainer: Thorsten Alteholz Homepage: https://meep.readthedocs.io Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/alteholz/meep Vcs-Git: https://salsa.debian.org/alteholz/meep.git Build-Depends: gfortran, debhelper-compat (= 12), libctl-dev (>= 4.5.0-8), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libgsl-dev, liblapack-dev, chrpath, libblas-dev, libhdf5-dev, swig, mpb-dev (>= 1.11.1-2), mpb, python3-dev, python3-numpy, python3-h5py, python3-scipy, python3-matplotlib, libgdsii-dev Package-List: libmeep-dev deb libdevel optional arch=any libmeep23 deb libs optional arch=any meep deb science optional arch=any python3-meep deb python optional arch=any Checksums-Sha1: 0c79176208ee0b4176706136860f8f5792aff07a 29639336 meep_1.17.1.orig.tar.gz 813c32792cf48ed47bff563d49781a4385e81bf1 142188 meep_1.17.1-1.debian.tar.xz Checksums-Sha256: 271b4a547a7abc2e7ac67ecc06c2f112603c7de48c774a519f014b99b59185ad 29639336 meep_1.17.1.orig.tar.gz 32ff6971b94101d7cac223eb89bb56bcec739531cc47ac03c6e0948dc6c2fe0d 142188 meep_1.17.1-1.debian.tar.xz Files: 1abda0fad3ba94c4b5fc753cf1518ea8 29639336 meep_1.17.1.orig.tar.gz 39536ca6d11269dab2b8adc20ea74617 142188 meep_1.17.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQKnBAEBCgCRFiEEYgH7/9u94Hgi6ruWlvysDTh7WEcFAmATD/NfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDYy MDFGQkZGREJCREUwNzgyMkVBQkI5Njk2RkNBQzBEMzg3QjU4NDcTHGRlYmlhbkBh bHRlaG9sei5kZQAKCRCW/KwNOHtYR9qvD/4pbqCZ5l0R0mQDOTbdQAWkcZlXmG2D kh26dH+L+3vJIDseWMrJjmHx2H0Uitudwz4hzSgFMVdFBx7OQLP+4CX5xn09LLoI IjaSw4Tms25r6jpa12N1emd3uRDqndkiOnazFniW0IJyFsxh1RPawBSdtgJDKIlI 0Oqur828JmiVRuLw8hsNqx5vCu0WI+5ui65YBqfxlt0DyIxWa2xgS11ptWmuwxmb YinwgaWUQveRj39zkaqN9F334R8Xa1sEuyPENBWnv7UaElVddbf/mV/94RsYkEME y8lpFdeM2RqK4DxoVO5ujRtmD0uZbYkh8fDTO6oRZnvMtmkkK0ScYN4sCOp1jXEb veGI0epR9911rzxMzpPjU0eaSTTEM3itTPSLoIg4bqkPlZ3z1rNDs987DKqgf2hW Ng7N5Kqbxz4aJcs+w6Ohfc+BS/ES4D1OfQJayqJaQ+mJMUt6b65n7PQ6oXkykIv9 yQTZjSQ+XmJInfIqxgB+O/gAYtNllUbGJ3fdfZXr2uACHstEhfhnUKzgJjMAk4KO 0Bfw44wDM1vnaGIyR+qXjP8DEM0QU9rN+VlS6qccdWH6qBROAEnOBwvtPV7rOhSb 1d6CL63342cCATiPlghC0TV46+meyi0B/SCZIG3FqpCVHYEkOCnJMhjsmGb+tqLV vHj7svZL1J7BCw== =xPsg -----END PGP SIGNATURE----- Fri Aug 13 01:04:34 UTC 2021 I: Checking whether the package is not for us Fri Aug 13 01:04:34 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Aug 13 01:04:34 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Aug 13 01:11:00 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 14 19:27:35 -12 2022 I: pbuilder-time-stamp: 1663226855 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [meep_1.17.1-1.dsc] I: copying [./meep_1.17.1.orig.tar.gz] I: copying [./meep_1.17.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.hwK4S72S/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 28 07:26:43 2021 -12 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./meep_1.17.1-1.dsc dpkg-source: info: extracting meep in meep-1.17.1 dpkg-source: info: unpacking meep_1.17.1.orig.tar.gz dpkg-source: info: unpacking meep_1.17.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/39566/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='538e5c4aca6b429c95b7dc56442829b7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='39566' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/pbuilderrc_kwll --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/b1 --logfile b1/build.log meep_1.17.1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Aug 4 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jul 28 2021 more -rwsr-xr-x 1 root root 50720 Jul 28 2021 mount -rwxr-xr-x 1 root root 13856 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 14 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jul 28 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jul 28 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/39566/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: gfortran, debhelper-compat (= 12), libctl-dev (>= 4.5.0-8), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libgsl-dev, liblapack-dev, chrpath, libblas-dev, libhdf5-dev, swig, mpb-dev (>= 1.11.1-2), mpb, python3-dev, python3-numpy, python3-h5py, python3-scipy, python3-matplotlib, libgdsii-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libctl-dev (>= 4.5.0-8); however: Package libctl-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libharminv-dev (>= 1.4.1); however: Package libharminv-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on mpb-dev (>= 1.11.1-2); however: Package mpb-dev is not installed. pbuilder-satisfydepends-dummy depends on mpb; however: Package mpb is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on libgdsii-dev; however: Package libgdsii-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} guile-2.2{a} guile-2.2-dev{a} guile-2.2-libs{a} guile-3.0-libs{a} hdf5-helpers{a} ibverbs-providers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libctl-dev{a} libctl7{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgc-dev{a} libgc1{a} libgdsii-dev{a} libgdsii0{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgsl-dev{a} libgsl25{a} libgslcblas0{a} libharminv-dev{a} libharminv3{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhdf5-openmpi-103-1{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libltdl-dev{a} libltdl7{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnl-3-200{a} libnl-route-3-200{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpng16-16{a} libpsm-infinipath1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librdmacm1{a} libreadline-dev{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} mpb{a} mpb-dev{a} mpb-scm{a} ocl-icd-libopencl1{a} pkg-config{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-scipy{a} python3-six{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} ttf-bitstream-vera{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl h5utils javascript-common libarchive-cpio-perl libctl-doc libglib2.0-data libgpm2 libmail-sendmail-perl lynx python3-olefile python3-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 171 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 494 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 fonts-lyx all 2.3.6-1 [205 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B] Get: 52 http://deb.debian.org/debian bullseye/main i386 libgc1 i386 1:8.0.4-3 [242 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 guile-2.2-libs i386 2.2.7+1-6 [5029 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 guile-2.2 i386 2.2.7+1-6 [22.0 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libncurses-dev i386 6.2+20201114-2 [373 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libncurses5-dev i386 6.2+20201114-2 [932 B] Get: 59 http://deb.debian.org/debian bullseye/main i386 libreadline-dev i386 8.1-1 [161 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libgmpxx4ldbl i386 2:6.2.1+dfsg-1 [338 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libgmp-dev i386 2:6.2.1+dfsg-1 [658 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libgc-dev i386 1:8.0.4-3 [408 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 guile-2.2-dev i386 2.2.7+1-6 [675 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 guile-3.0-libs i386 3.0.5-4 [6401 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4 [40.4 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.2-1 [64.6 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.2-1 [275 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 75 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libctl7 i386 4.5.0-9 [123 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libctl-dev i386 4.5.0-9 [111 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.2-1 [75.2 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libgdsii0 i386 0.2+ds.1-1 [32.5 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libgdsii-dev i386 0.2+ds.1-1 [36.1 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libgslcblas0 i386 2.6+dfsg-2 [99.2 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libgsl25 i386 2.6+dfsg-2 [911 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libgsl-dev i386 2.6+dfsg-2 [1146 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libharminv3 i386 1.4.1-2 [15.5 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libharminv-dev i386 1.4.1-2 [4916 B] Get: 106 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4 [1156 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4 [148 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4 [114 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4 [93.2 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4 [58.3 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4 [38.1 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4 [2586 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1 [311 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1 [794 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.91.03-1 [26.8 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4.1 [583 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-10 [2144 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libhdf5-openmpi-103-1 i386 1.10.6+repack-4 [1199 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 liblbfgsb0 i386 3.0+dfsg.3-9 [28.4 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 liblzf1 i386 3.6-3 [9668 B] Get: 141 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libwebpdemux2 i386 0.6.1-2.1 [88.2 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libwebpmux3 i386 0.6.1-2.1 [99.0 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 mpb-scm all 1.11.1-3 [15.0 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 mpb i386 1.11.1-3 [230 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 mpb-dev i386 1.11.1-3 [11.2 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 python3-cycler all 0.10.0-3 [8084 B] Get: 155 http://deb.debian.org/debian bullseye/main i386 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 python3-decorator all 4.4.2-2 [15.8 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 python3-h5py-serial i386 2.10.0-9+b2 [657 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 python3-h5py all 2.10.0-9 [11.4 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 python3-kiwisolver i386 1.3.1-1+b1 [58.5 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 python3-pil i386 8.1.2+dfsg-0.3 [445 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 python3-matplotlib i386 3.3.4-1 [4165 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] Get: 170 http://deb.debian.org/debian bullseye/main i386 swig4.0 i386 4.0.2-1 [1443 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 swig all 4.0.2-1 [330 kB] Fetched 116 MB in 3s (33.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_i386.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. 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Setting up libicu67:i386 (67.1-7) ... Setting up libgslcblas0:i386 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:i386 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.66.8-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up libfftw3-long3:i386 (3.3.8-2) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libaec0:i386 (1.0.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.2.1+dfsg-1) ... 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Setting up ocl-icd-libopencl1:i386 (2.2.14-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libnl-3-200:i386 (3.4.0-1+b1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:i386 (10.2.1-6) ... Setting up libtiff5:i386 (4.2.0-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up swig4.0 (4.0.2-1) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libgc-dev:i386 (1:8.0.4-3) ... Setting up libwebpmux3:i386 (0.6.1-2.1) ... Setting up libbsd0:i386 (0.11.3-1) ... Setting up libgdsii0:i386 (0.2+ds.1-1) ... Setting up mailcap (3.69) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up chrpath (0.16-2+b1) ... Setting up libblas-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.2+20201114-2) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up swig (4.0.2-1) ... Setting up libgmp-dev:i386 (2:6.2.1+dfsg-1) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libgdsii-dev:i386 (0.2+ds.1-1) ... Setting up libwebpdemux2:i386 (0.6.1-2.1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libaec-dev:i386 (1.0.4-1) ... Setting up libjpeg-dev:i386 (1:2.0.6-4) ... Setting up m4 (1.4.18-5) ... Setting up libreadline-dev:i386 (8.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-200:i386 (3.4.0-1+b1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1) ... Setting up liblapack-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up gfortran-10 (10.2.1-6) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up libharminv3 (1.4.1-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:i386 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libncurses5-dev:i386 (6.2+20201114-2) ... Setting up libhdf5-cpp-103-1:i386 (1.10.6+repack-4) ... Setting up libx11-6:i386 (2:1.7.2-1) ... Setting up libharminv-dev (1.4.1-2) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up guile-2.2-libs:i386 (2.2.7+1-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:i386 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:i386 (33.2-1) ... Setting up guile-2.2 (2.2.7+1-6) ... update-alternatives: using /usr/lib/i386-linux-gnu/guile/2.2/bin/guile to provide /usr/bin/guile (guile) in auto mode Setting up ibverbs-providers:i386 (33.2-1) ... Setting up guile-3.0-libs:i386 (3.0.5-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:i386 (460.91.03-1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up libctl7:i386 (4.5.0-9) ... Setting up guile-2.2-dev (2.2.7+1-6) ... update-alternatives: using /usr/bin/guile-config-2.2 to provide /usr/bin/guile-config (guile-config) in auto mode update-alternatives: using /usr/share/aclocal/guile-2.2.m4 to provide /usr/share/aclocal/guile.m4 (guile-autoconf-macros) in auto mode Setting up libhdf5-hl-cpp-100:i386 (1.10.6+repack-4) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up libhdf5-fortran-102:i386 (1.10.6+repack-4) ... Setting up libhdf5-hl-fortran-100:i386 (1.10.6+repack-4) ... Setting up python3.9 (3.9.2-1) ... Setting up librdmacm1:i386 (33.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up libctl-dev:i386 (4.5.0-9) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:i386 (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up libpmix2:i386 (4.0.0-4.1) ... Setting up libopenmpi3:i386 (4.1.0-10) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libhdf5-openmpi-103-1:i386 (1.10.6+repack-4) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up mpb (1.11.1-3) ... Setting up python3-h5py (2.10.0-9) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/meep-1.17.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep dpkg-buildpackage: info: source version 1.17.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_clean make[1]: Entering directory '/build/meep-1.17.1' # we do not need this anymore rm -f tests/latest_output dh_clean make[1]: Leaving directory '/build/meep-1.17.1' debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:24: installing './compile' configure.ac:68: installing './config.guess' configure.ac:68: installing './config.sub' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' libpympb/Makefile.am: installing './depcomp' python/Makefile.am:213: installing './py-compile' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/meep-1.17.1' F77=gfortran dh_auto_configure -- --host=i686-linux-gnu --build=i686-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --enable-maintainer-mode ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --build=i686-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --enable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... 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(cached) yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -lharminv checking mpb.h usability... yes checking mpb.h presence... yes checking for mpb.h... yes checking for maxwell_target_operator1 in -lmpb... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for 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for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking for swig... swig checking for python... no checking for python2... no checking for python3... /usr/bin/python3 checking for python version... 3.9 checking for python platform... linux checking for python script directory... ${prefix}/lib/python3.9/site-packages checking for python extension module directory... ${exec_prefix}/lib/python3.9/site-packages checking for Python include directory... /usr/include/python3.9 checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes checking for Numpy include directory... /usr/lib/python3/dist-packages/numpy/core/include checking for numpy/arrayobject.h... yes checking for coverage module... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating scheme/Makefile config.status: creating scheme/meep.scm config.status: creating libpympb/Makefile config.status: creating python/Makefile config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating src/support/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/meep-1.17.1' dh_auto_build make -j1 make[1]: Entering directory '/build/meep-1.17.1' make all-recursive make[2]: Entering directory '/build/meep-1.17.1' Making all in src make[3]: Entering directory '/build/meep-1.17.1/src' make sphere_quad make[4]: Entering directory '/build/meep-1.17.1/src' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.17.1/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make all-recursive make[4]: Entering directory '/build/meep-1.17.1/src' Making all in support make[5]: Entering directory '/build/meep-1.17.1/src/support' /bin/bash ../../libtool --tag=CC --mode=compile i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937ar.lo mt19937ar.c libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -c mt19937ar.c -fPIC -DPIC -o mt19937ar.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-ar cr .libs/libsupport.a .libs/mt19937ar.o libtool: link: i686-linux-gnu-ranlib .libs/libsupport.a libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" ) make[5]: Leaving directory '/build/meep-1.17.1/src/support' make[5]: Entering directory '/build/meep-1.17.1/src' /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o .libs/anisotropic_averaging.o anisotropic_averaging.cpp: In function 'meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)': anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] 39 | default: abort("unknown dimensions in sphere_pt\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bands.lo bands.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o .libs/bands.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o boundaries.lo boundaries.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o .libs/boundaries.o boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': boundaries.cpp:69:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 69 | switch (d) { | ^~~~~~ boundaries.cpp:77:5: note: here 77 | case D3: | ^~~~ In file included from meep.hpp:24, from boundaries.cpp:21: meep/vec.hpp: In member function 'bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const': meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bicgstab.lo bicgstab.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o .libs/bicgstab.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o casimir.lo casimir.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o .libs/casimir.o In file included from meep.hpp:24, from casimir.cpp:29: meep/vec.hpp: In member function 'std::complex meep::fields::casimir_stress_dct_integral(meep::direction, meep::direction, double, double, double, meep::field_type, meep::volume, bool)': meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o In file included from meep.hpp:24, from meep_internals.hpp:19, from cw_fields.cpp:18: meep/vec.hpp: In function 'void meep::array_to_fields(const std::complex*, meep::fields&)': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In function 'void meep::fields_to_array(const meep::fields&, std::complex*)': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In member function 'bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o dft.cpp: In member function 'cdouble meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, double*, int, cdouble*, void*, void*, int, bool, meep::fields*)': dft.cpp:749:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 749 | if ((num_freq < 0) || (num_freq > omega.size()-1)) | ~~~~~~~~~^~~~~~~~~~~~~~~~ dft.cpp:750:108: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] 750 | abort("process_dft_component: frequency index %d is outside the range of the frequency array of size %lu",num_freq,omega.size()); | ~~^ ~~~~~~~~~~~~ | | | | long unsigned int std::vector::size_type {aka unsigned int} | %u dft.cpp: In member function 'void meep::fields::output_dft_components(meep::dft_chunk**, int, meep::volume, const char*)': dft.cpp:1151:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1151 | if (!real_array) abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, array_size); | ~~^ ~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u dft.cpp: In member function 'void meep::fields::get_overlap(void*, void*, meep::dft_flux, int, cdouble*)': dft.cpp:1246:57: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] 1246 | mode2_data, cE[1]); | ^ dft.cpp:1244:57: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] 1244 | mode2_data, cE[0]); | ^ dft.cpp:1246:57: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] 1246 | mode2_data, cE[1]); | ^ dft.cpp:1244:57: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] 1244 | mode2_data, cE[0]); | ^ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o .libs/dft_ldos.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o fields.cpp: In member function 'meep::volume meep::fields::total_volume() const': fields.cpp:639:31: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 639 | v = v | S.transform(gv0, n); | ^ In file included from meep.hpp:24, from fields.cpp:23: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o loop_in_chunks.cpp: In member function 'void meep::fields::loop_in_chunks(meep::field_chunkloop, void*, const meep::volume&, meep::component, bool, bool)': loop_in_chunks.cpp:425:44: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 425 | vS = S.transform(chunks[i]->v, sn); | ^ In file included from meep.hpp:24, from loop_in_chunks.cpp:22: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ loop_in_chunks.cpp:434:82: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 434 | chunks[i]->gv.loc(Centered, chunks[i]->gv.ntot() - 1) + pad); | ^ In file included from meep.hpp:24, from loop_in_chunks.cpp:22: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5fields.lo h5fields.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o .libs/integrate.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate2.lo integrate2.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o monitor.lo monitor.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o .libs/monitor.o monitor.cpp: In member function 'double meep::fields::get_field(meep::derived_component, const meep::vec&, bool) const': monitor.cpp:123:19: warning: control reaches end of non-void function [-Wreturn-type] 123 | default: abort("unknown derived_component in get_field"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': monitor.cpp:325:19: warning: 'comp_list[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 325 | component cc = comp_list[com_it]; | ^~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mympi.lo mympi.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o .libs/mympi.o mympi.cpp: In function 'meep::ivec meep::max_to_all(const meep::ivec&)': mympi.cpp:277:7: warning: variable 'in' set but not used [-Wunused-but-set-variable] 277 | int in[5], out[5]; | ^~ mympi.cpp: In function 'void meep::abort(const char*, ...)': mympi.cpp:124:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 124 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ mympi.cpp: In function 'void meep::_do_master_printf(FILE*, meep::meep_printf_callback_func, const char*, va_list)': mympi.cpp:596:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 596 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o multilevel-atom.lo multilevel-atom.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o .libs/multilevel-atom.o multilevel-atom.cpp: In member function 'virtual void* meep::multilevel_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': multilevel-atom.cpp:138:47: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 138 | if (d == NULL) abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); | ~~^ ~~ | | | | long unsigned int size_t {aka unsigned int} | %u In file included from meep.hpp:24, from multilevel-atom.cpp:22: meep/vec.hpp: In member function 'virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': near2far.cpp:569:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 569 | everywhere = everywhere | where->v; | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from near2far.cpp:23: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep/vec.hpp: In function 'void meep::greencyl(std::complex*, const meep::vec&, double, double, double, const meep::vec&, meep::component, std::complex, double, double)': meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 429 | case Y: return (component)(start_point + 1); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': near2far.cpp:626:42: warning: 'fd[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 626 | component c = direction_component(i == 0 ? Ex : Hx, fd[j]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:117:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 117 | snprintf(outdirname, buflen, "%s-out", basename); | ^~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:126:36: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] 126 | snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); | ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:122:39: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 122 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); | ^~~~~ output_directory.cpp:122:36: note: directive argument in the range [0, 2147483647] 122 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o sources.cpp: In function 'std::complex meep::gaussianbeam_ampfunc(const meep::vec&)': sources.cpp:490:1: warning: control reaches end of non-void function [-Wreturn-type] 490 | } | ^ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o In file included from meep.hpp:24, from step.cpp:22: meep/vec.hpp: In member function 'void meep::fields_chunk::step_source(meep::field_type, bool)': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o In file included from meep.hpp:24, from step_db.cpp:23: meep/vec.hpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 429 | case Y: return (component)(start_point + 1); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o In file included from stress.cpp:21: ./meep.hpp: In constructor 'meep::dft_force::dft_force(meep::dft_chunk*, meep::dft_chunk*, meep::dft_chunk*, const double*, size_t, const meep::volume&)': ./meep.hpp:1194:10: warning: 'meep::dft_force::where' will be initialized after [-Wreorder] 1194 | volume where; | ^~~~~ ./meep.hpp:1192:23: warning: 'std::vector meep::dft_force::freq' [-Wreorder] 1192 | std::vector freq; | ^~~~ stress.cpp:47:1: warning: when initialized here [-Wreorder] 47 | dft_force::dft_force(dft_chunk *offdiag1_, dft_chunk *offdiag2_, dft_chunk *diag_, | ^~~~~~~~~ stress.cpp: In member function 'meep::dft_force meep::fields::add_dft_force(const meep::volume_list*, const double*, size_t)': stress.cpp:182:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 182 | everywhere = everywhere | where->v; | ^ In file included from ./meep.hpp:24, from stress.cpp:21: ./meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o structure.cpp: In member function 'void meep::structure::choose_chunkdivision(const meep::grid_volume&, int, const meep::boundary_region&, const meep::symmetry&)': structure.cpp:130:23: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 130 | v = gv.surroundings(); | ^ In file included from meep.hpp:24, from structure.cpp:23: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ structure.cpp: In function 'std::vector meep::choose_chunkdivision(meep::grid_volume&, meep::volume&, int, const meep::symmetry&)': structure.cpp:207:25: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 207 | v = gv.surroundings(); | ^ In file included from meep.hpp:24, from structure.cpp:23: meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o structure_dump.cpp: In member function 'void meep::structure::dump(const char*)': structure_dump.cpp:275:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^ structure_dump.cpp:275:31: note: using the range [-2147483648, 2147483647] for directive argument 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from structure_dump.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:644:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~ structure_dump.cpp:644:31: note: directive argument in the range [0, 19] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); | ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:644:31: note: directive argument in the range [0, 4] In file included from /usr/include/stdio.h:867, from structure_dump.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o susceptibility.cpp: In member function 'virtual void* meep::lorentzian_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': susceptibility.cpp:116:47: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 116 | if (d == NULL) abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); | ~~^ ~~ | | | | long unsigned int size_t {aka unsigned int} | %u susceptibility.cpp: In member function 'virtual void* meep::gyrotropic_susceptibility::new_internal_data(meep::realnum* (*)[2], const meep::grid_volume&) const': susceptibility.cpp:389:47: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 389 | if (d == NULL) abort("%s:%i:out of memory(%lu)", __FILE__, __LINE__, sz); | ~~^ ~~ | | | | long unsigned int size_t {aka unsigned int} | %u In file included from meep.hpp:24, from susceptibility.cpp:31: meep/vec.hpp: In member function 'virtual void meep::lorentzian_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In member function 'virtual void meep::gyrotropic_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp: In member function 'virtual bool meep::susceptibility::needs_W_notowned(meep::component, meep::realnum* (*)[2]) const': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o In file included from meep.hpp:24, from update_eh.cpp:20: meep/vec.hpp: In member function 'bool meep::fields_chunk::update_eh(meep::field_type, bool)': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ meep/vec.hpp:430:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | case Z: return (component)(start_point + 4); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o mpb.cpp: In member function 'void* meep::fields::get_eigenmode(double, meep::direction, meep::volume, meep::volume, int, const meep::vec&, bool, int, double, double, double*, void**, meep::diffractedplanewave*)': mpb.cpp:518:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 518 | if (am_master()) | ^~ mpb.cpp:520:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 520 | for (int i = 0; i < H.n * H.p; ++i) { | ^~~ mpb.cpp: In function 'std::complex meep::eigenmode_amplitude(void*, const meep::vec&, meep::component)': mpb.cpp:247:57: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] 247 | #define D(x, y, z) (data[(((x)*ny + (y)) * nz + (z)) * 3]) | ^ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o vec.cpp: In member function 'size_t meep::grid_volume::surface_area() const': vec.cpp:866:14: warning: statement has no effect [-Wunused-value] 866 | case D1: 2; | ^ vec.cpp: In member function 'meep::signed_direction meep::symmetry::transform(meep::direction, int) const': vec.cpp:1367:27: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 1367 | if (nme == 1) sd = S[d]; | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp:1369:43: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 1369 | sd = flip(transform(S[d].d, nme - 1)); | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp:1371:37: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 1371 | sd = transform(S[d].d, nme - 1); | ^ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ vec.cpp: In member function 'double meep::grid_volume::boundary_location(meep::boundary_side, meep::direction) const': vec.cpp:712:20: warning: this statement may fall through [-Wimplicit-fallthrough=] 712 | case P: abort("P has no boundary!\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ vec.cpp:713:7: note: here 713 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); | ^~~~ vec.cpp:725:20: warning: this statement may fall through [-Wimplicit-fallthrough=] 725 | case P: abort("P has no boundary!\n"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ vec.cpp:726:7: note: here 726 | case NO_DIRECTION: abort("NO_DIRECTION has no boundary!\n"); | ^~~~ In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: meep/vec.hpp: In member function 'meep::component meep::symmetry::transform(meep::component, int) const': meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient(meep::realnum*, size_t, std::complex*, std::complex*, meep::realnum*, size_t, meep::realnum, const meep::volume&, geom_box_tree, meep::fields*)': meepgeom.cpp:2475:9: warning: unused variable 'rank' [-Wunused-variable] 2475 | int rank = f->get_array_slice_dimensions(where, &dims[3 * c], dirs, true, false, min_max_loc, | ^~~~ meepgeom.cpp:2496:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 2496 | for (int i1 = 0; i1 < nf; ++i1) { // freq | ~~~^~~~ meepgeom.cpp:2497:22: warning: unused variable 'v_cur' [-Wunused-variable] 2497 | meep::realnum *v_cur = &v[ng * i1]; | ^~~~~ meepgeom.cpp: In function 'meep::vec meep_geom::vector3_to_vec(vector3)': meepgeom.cpp:254:25: warning: control reaches end of non-void function [-Wreturn-type] 254 | default: meep::abort("unknown dimensionality in vector3_to_vec"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meepgeom.cpp: In function 'double meep_geom::vec_to_value(vector3, vector3, int)': meepgeom.cpp:2227:1: warning: control reaches end of non-void function [-Wreturn-type] 2227 | } | ^ meepgeom.cpp: In function 'std::complex meep_geom::cvec_to_value(vector3, cvector3, int)': meepgeom.cpp:2212:1: warning: control reaches end of non-void function [-Wreturn-type] 2212 | } | ^ meepgeom.cpp: At global scope: meepgeom.cpp:2190:13: warning: 'void meep_geom::print_tensor(std::complex*)' defined but not used [-Wunused-function] 2190 | static void print_tensor(std::complex *in) { | ^~~~~~~~~~~~ meepgeom.cpp: In function 'meep::realnum meep_geom::get_material_gradient(meep::realnum, std::complex, std::complex, meep::realnum, meep_geom::material_data*, meep::component, meep::realnum)': meepgeom.cpp:2314:62: warning: 'dir_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 2314 | std::complex result = fields_a * dA_du[3 * dir_idx + dir_idx] * fields_f; | ~~~~~~~~~~~~^~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o libmeep.la -rpath /usr/lib/i386-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,libmeep.so.23 -o .libs/libmeep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "libmeep.so.23" && ln -s "libmeep.so.23.0.1" "libmeep.so.23") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.23.0.1" "libmeep.so") libtool: link: (cd .libs/libmeep.lax/libsupport.a && i686-linux-gnu-ar x "/build/meep-1.17.1/src/support/.libs/libsupport.a") libtool: link: i686-linux-gnu-ar cr .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o meepgeom.o GDSIIgeom.o step_generic_stride1.o .libs/libmeep.lax/libsupport.a/mt19937ar.o libtool: link: i686-linux-gnu-ranlib .libs/libmeep.a libtool: link: rm -fr .libs/libmeep.lax libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) make[5]: Leaving directory '/build/meep-1.17.1/src' make[4]: Leaving directory '/build/meep-1.17.1/src' make[3]: Leaving directory '/build/meep-1.17.1/src' Making all in tests make[3]: Entering directory '/build/meep-1.17.1/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/meep-1.17.1/tests' Making all in scheme make[3]: Entering directory '/build/meep-1.17.1/scheme' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i patch -p0 meep_wrap.cxx < ./meep_wrap.patch patching file meep_wrap.cxx Hunk #1 succeeded at 798 (offset 47 lines). sed -i.bak '/(SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob))/ s/swig_collectable_tag, smob)/swig_collectable_tag, smob) || SCM_SMOB_PREDICATE((swig_collectable_tag \& ~0xff00), (smob))/' meep_wrap.cxx; make all-am make[4]: Entering directory '/build/meep-1.17.1/scheme' i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep.o `test -f 'meep.cpp' || echo './'`meep.cpp i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp structure.cpp: In function 'meep::vec vector3_to_vec(vector3)': structure.cpp:148:25: warning: control reaches end of non-void function [-Wreturn-type] 148 | default: meep::abort("unknown dimensionality in vector3_to_vec"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': structure.cpp:580:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] 580 | mat2 = mat1; | ~~~~~^~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_flip(SCM)': meep_wrap.cxx:2857:13: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 2857 | arg1 = *argp1; | ^~~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep_wrap.cxx:2859:27: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 2859 | result = meep::flip(arg1); | ^ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_symmetry_transform__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:10569:63: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 10569 | result = ((meep::symmetry const *)arg1)->transform(arg2,arg3); | ^ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_volume_list_v_set(SCM, SCM)': meep_wrap.cxx:11678:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 11678 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_structure_chunk_v_set(SCM, SCM)': meep_wrap.cxx:20561:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 20561 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_structure_v_set(SCM, SCM)': meep_wrap.cxx:23197:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 23197 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:33250:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33250 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33253:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33253 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_1(int, scm_unused_struct**)': meep_wrap.cxx:33310:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33310 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33313:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33313 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_2(int, scm_unused_struct**)': meep_wrap.cxx:33365:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33365 | arg1 = (meep::component const) scm_to_int(argv[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx:33368:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33368 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_dft_flux_where_set(SCM, SCM)': meep_wrap.cxx:34591:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 34591 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_dft_energy_where_set(SCM, SCM)': meep_wrap.cxx:36086:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 36086 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_dft_force_where_set(SCM, SCM)': meep_wrap.cxx:37357:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 37357 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_dft_near2far_where_set(SCM, SCM)': meep_wrap.cxx:39150:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 39150 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_dft_fields_where_set(SCM, SCM)': meep_wrap.cxx:40132:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 40132 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_fields_chunk_v_set(SCM, SCM)': meep_wrap.cxx:41700:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 41700 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_fields_v_set(SCM, SCM)': meep_wrap.cxx:44472:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 44472 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from ../src/meep.hpp:24, from meep-ctl.hpp:5, from meep_wrap.cxx:1454: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ ../src/meep/vec.hpp: In function 'scm_unused_struct* _wrap_meep_field_type_component(SCM, SCM)': ../src/meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp: In function 'scm_unused_struct* _wrap_meep_cycle_component(SCM, SCM, SCM)': ../src/meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp: In function 'scm_unused_struct* _wrap_meep_direction_component(SCM)': ../src/meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp In file included from ctl-io.h:7, from main.cpp:37: main.cpp: In function 'void main_entry(void*, int, char**)': main.cpp:194:31: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 194 | gh_new_procedure("subplex", (SCM(*)(void))subplex_scm, 7, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:202:44: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 202 | gh_new_procedure("adaptive-integration", (SCM(*)(void))adaptive_integration_scm, 6, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:205:45: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 205 | gh_new_procedure("cadaptive-integration", (SCM(*)(void))cadaptive_integration_scm, 6, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp geom.cpp:22: warning: "_GNU_SOURCE" redefined 22 | #define _GNU_SOURCE | : note: this is the location of the previous definition geom.cpp: In function 'vector3 normal_to_prism(ctlio::prism*, vector3)': geom.cpp:2357:11: warning: variable 'axisp' set but not used [-Wunused-but-set-variable] 2357 | vector3 axisp = vector3_scale(height, zhatp); | ^~~~~ i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.17.1, Copyright (C) 2005-2021 Massachusetts Institute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': ctl-io.cpp:2229:38: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2229 | gh_new_procedure("square-basis-aux", (SCM (*)()) square_basis_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2230:51: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2230 | gh_new_procedure("range-overlap-with-object-aux", (SCM (*)()) range_overlap_with_object_aux, 5, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2231:55: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2231 | gh_new_procedure("display-geometric-object-info-aux", (SCM (*)()) display_geometric_object_info_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2232:51: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2232 | gh_new_procedure("point-in-periodic-object?-aux", (SCM (*)()) point_in_periodic_objectp_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2233:42: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2233 | gh_new_procedure("normal-to-object-aux", (SCM (*)()) normal_to_object_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:2234:42: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] 2234 | gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-1.17.1/scheme' make[3]: Leaving directory '/build/meep-1.17.1/scheme' Making all in libpympb make[3]: Entering directory '/build/meep-1.17.1/libpympb' /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o libpympb_la-pympb.lo `test -f 'pympb.cpp' || echo './'`pympb.cpp libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o .libs/libpympb_la-pympb.o pympb.cpp: In member function 'int py_mpb::mode_solver::mean_epsilon(symmetric_matrix*, symmetric_matrix*, mpb_real*, mpb_real, mpb_real, mpb_real, mpb_real, const mpb_real*)': pympb.cpp:367:14: warning: 'shiftby1' may be used uninitialized in this function [-Wmaybe-uninitialized] 367 | shiftby2 = shiftby1; | ~~~~~~~~~^~~~~~~~~~ pympb.cpp:384:51: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] 384 | if (id1 == id2 || meep_geom::material_type_equal(mat1, mat2)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pympb.cpp:357:73: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] 357 | !(id2 < id1 && (id2 == id || meep_geom::material_type_equal(mat2, mat)))) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wfatal-errors -I../src -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c pympb.cpp -fPIC -DPIC -o libpympb_la-pympb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/i386-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/libpympb_la-pympb.o -Wl,-rpath -Wl,/build/meep-1.17.1/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.23 -o .libs/libpympb.so.23.0.1 libtool: link: (cd ".libs" && rm -f "libpympb.so.23" && ln -s "libpympb.so.23.0.1" "libpympb.so.23") libtool: link: (cd ".libs" && rm -f "libpympb.so" && ln -s "libpympb.so.23.0.1" "libpympb.so") libtool: link: i686-linux-gnu-ar cr .libs/libpympb.a libpympb_la-pympb.o libtool: link: i686-linux-gnu-ranlib .libs/libpympb.a libtool: link: ( cd ".libs" && rm -f "libpympb.la" && ln -s "../libpympb.la" "libpympb.la" ) make[3]: Leaving directory '/build/meep-1.17.1/libpympb' Making all in python make[3]: Entering directory '/build/meep-1.17.1/python' swig -Wextra -I../src -I../libpympb -I.. -outdir . -c++ -nofastunpack -python -o meep-python.cxx ./meep.i swig -Wextra -I../src -I../libpympb -I.. -outdir . -c++ -nofastunpack -python -o mpb-python.cxx ./mpb.i cp meep.py __init__.py echo "__version__ = '1.17.1'" >> __init__.py if [[ "4.0.2" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi if [[ "4.0.2" == 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' mpb.py; \ sed -i.bak 's/ import _mpb/from . import _mpb/' mpb.py; \ fi make all-am make[4]: Entering directory '/build/meep-1.17.1/python' /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o In file included from meep-python.cxx:3513: typemap_utils.cpp: In function 'PyObject* py_volume_object()': typemap_utils.cpp:102:15: warning: unused variable 'geom_mod' [-Wunused-variable] 102 | PyObject *geom_mod = get_geom_mod(); | ^~~~~~~~ typemap_utils.cpp: In function 'int get_attr_material(PyObject*, meep_geom::material_data**)': typemap_utils.cpp:313:7: warning: variable 'rval' set but not used [-Wunused-but-set-variable] 313 | int rval = 1; | ^~~~ typemap_utils.cpp: In function 'int pymaterial_grid_to_material_grid(PyObject*, meep_geom::material_data*)': typemap_utils.cpp:459:68: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 459 | default: meep::abort("Invalid material grid enumeration code: %d.\n", gt_enum); | ~^ ~~~~~~~ | | | | int long int | %ld meep-python.cxx: In function 'void _get_gradient(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)': meep-python.cxx:4603:5: warning: passing NULL to non-pointer argument 4 of 'int SWIG_Python_ConvertPtrAndOwn(PyObject*, void**, swig_type_info*, int, int*)' [-Wconversion-null] 4603 | SWIG_ConvertPtr(swigobj,&where,NULL,NULL); | ^~~~~~~~~~~~~~~ meep-python.cxx:2100:81: note: declared here 2100 | SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) { | ~~~~^~~~~ meep-python.cxx:4623:5: warning: passing NULL to non-pointer argument 4 of 'int SWIG_Python_ConvertPtrAndOwn(PyObject*, void**, swig_type_info*, int, int*)' [-Wconversion-null] 4623 | SWIG_ConvertPtr(f,&f_v,NULL,NULL); | ^~~~~~~~~~~~~~~ meep-python.cxx:2100:81: note: declared here 2100 | SWIG_Python_ConvertPtrAndOwn(PyObject *obj, void **ptr, swig_type_info *ty, int flags, int *own) { | ~~~~^~~~~ meep-python.cxx: In function 'void std_vector_Sl_meep_volume_Sg____setitem____SWIG_2(std::vector*, std::vector::difference_type, const value_type&)': meep-python.cxx:6169:33: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 6169 | *(swig::getpos(self,i)) = x; | ^ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_signed_direction___mul__(PyObject*, PyObject*)': meep-python.cxx:21807:39: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 21807 | result = (arg1)->operator *(arg2); | ^ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_flip(PyObject*, PyObject*)': meep-python.cxx:22239:15: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 22239 | arg1 = *temp; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx:22245:31: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 22245 | result = meep::flip(arg1); | ^ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cxx:22397:103: warning: unused parameter 'varargs' [-Wunused-parameter] 22397 | SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_symmetry_transform__SWIG_0(PyObject*, PyObject*)': meep-python.cxx:33166:67: warning: implicitly-declared 'constexpr meep::signed_direction& meep::signed_direction::operator=(const meep::signed_direction&)' is deprecated [-Wdeprecated-copy] 33166 | result = ((meep::symmetry const *)arg1)->transform(arg2,arg3); | ^ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:86:3: note: because 'meep::signed_direction' has user-provided 'meep::signed_direction::signed_direction(const meep::signed_direction&)' 86 | signed_direction(const signed_direction &sd) { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_volume_list_v_set(PyObject*, PyObject*)': meep-python.cxx:34618:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 34618 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_structure_chunk_v_set(PyObject*, PyObject*)': meep-python.cxx:43459:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 43459 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_structure_v_set(PyObject*, PyObject*)': meep-python.cxx:46974:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 46974 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_dft_flux_where_set(PyObject*, PyObject*)': meep-python.cxx:62093:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 62093 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_dft_energy_where_set(PyObject*, PyObject*)': meep-python.cxx:64007:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 64007 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_dft_force_where_set(PyObject*, PyObject*)': meep-python.cxx:65649:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 65649 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_dft_near2far_where_set(PyObject*, PyObject*)': meep-python.cxx:68004:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 68004 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_dft_fields_where_set(PyObject*, PyObject*)': meep-python.cxx:69232:30: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 69232 | if (arg1) (arg1)->where = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_fields_chunk_v_set(PyObject*, PyObject*)': meep-python.cxx:70847:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 70847 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_fields_v_set(PyObject*, PyObject*)': meep-python.cxx:74123:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 74123 | if (arg1) (arg1)->v = *arg2; | ^~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx: In function 'PyObject* _wrap_master_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cxx:114043:111: warning: unused parameter 'varargs' [-Wunused-parameter] 114043 | SWIGINTERN PyObject *_wrap_master_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_master_printf_stderr__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cxx:114089:118: warning: unused parameter 'varargs' [-Wunused-parameter] 114089 | SWIGINTERN PyObject *_wrap_master_printf_stderr__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_debug_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cxx:114135:110: warning: unused parameter 'varargs' [-Wunused-parameter] 114135 | SWIGINTERN PyObject *_wrap_debug_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_master_fprintf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cxx:114181:112: warning: unused parameter 'varargs' [-Wunused-parameter] 114181 | SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { | ~~~~~~~~~~^~~~~~~ meep-python.cxx: In instantiation of 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector; Difference = int; InputSeq = std::vector; Py_ssize_t = int]': meep-python.cxx:6110:97: required from here meep-python.cxx:5160:17: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 5160 | *it++ = *isit++; | ~~~~~~^~~~~~~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ meep-python.cxx:5176:15: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 5176 | *it++ = *isit++; | ~~~~~~^~~~~~~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ In file included from meep-python.cxx:3513: typemap_utils.cpp: In function 'PyObject* gobj_to_py_obj(geometric_object*)': typemap_utils.cpp:1003:18: warning: control reaches end of non-void function [-Wreturn-type] 1003 | meep::abort("Conversion of non-prism geometric_object to Python is not supported"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ typemap_utils.cpp: In function 'PyObject* material_to_py_material(meep_geom::material_type)': typemap_utils.cpp:704:18: warning: control reaches end of non-void function [-Wreturn-type] 704 | meep::abort("Can only convert C++ medium_struct to Python"); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ typemap_utils.cpp: At global scope: typemap_utils.cpp:98:18: warning: 'PyObject* py_volume_object()' defined but not used [-Wunused-function] 98 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_field_type_component(PyObject*, PyObject*)': meep-python.cxx:23192:28: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 23192 | resultobj = SWIG_From_int(static_cast< int >(result)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep-python.cxx: In function 'PyObject* _wrap_cycle_component(PyObject*, PyObject*)': meep-python.cxx:23419:28: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 23419 | resultobj = SWIG_From_int(static_cast< int >(result)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from meep-python.cxx:2943: ../src/meep/vec.hpp: In function 'PyObject* _wrap_direction_component(PyObject*, PyObject*)': ../src/meep/vec.hpp:459:52: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 459 | return int(direction_component(component(c), d)); | ^ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ ../src/meep/vec.hpp:432:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 432 | case P: return (component)(start_point + 3); | ^~~~~~~~~~~ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ In file included from meep-python.cxx:3513: typemap_utils.cpp: In function 'int pymaterial_to_material(PyObject*, meep_geom::material_data**)': typemap_utils.cpp:565:7: warning: 'md' may be used uninitialized in this function [-Wmaybe-uninitialized] 565 | *mt = md; | ~~~~^~~~ meep-python.cxx: In function 'void _get_gradient(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)': meep-python.cxx:4627:42: warning: 'f_v' may be used uninitialized in this function [-Wmaybe-uninitialized] 4627 | meep_geom::material_grids_addgradient(grad_c,ng,fields_a_c,fields_f_c,frequencies_c,nf,scalegrad,*where_vol,geometry_tree,f_c); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meep-python.cxx:4619:49: warning: 'where' may be used uninitialized in this function [-Wmaybe-uninitialized] 4619 | geom_box_tree geometry_tree = calculate_tree(*where_vol,*l); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-1.17.1/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "_meep.so.23" && ln -s "_meep.so.23.0.1" "_meep.so.23") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.23.0.1" "_meep.so") libtool: link: i686-linux-gnu-ar cr .libs/_meep.a _meep_la-meep-python.o libtool: link: i686-linux-gnu-ranlib .libs/_meep.a libtool: link: ( cd ".libs" && rm -f "_meep.la" && ln -s "../_meep.la" "_meep.la" ) /bin/bash ../libtool --tag=CXX --mode=compile i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _mpb_la-mpb-python.lo `test -f 'mpb-python.cxx' || echo './'`mpb-python.cxx libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cxx -fPIC -DPIC -o .libs/_mpb_la-mpb-python.o In file included from mpb-python.cxx:2850: typemap_utils.cpp: In function 'PyObject* py_volume_object()': typemap_utils.cpp:102:15: warning: unused variable 'geom_mod' [-Wunused-variable] 102 | PyObject *geom_mod = get_geom_mod(); | ^~~~~~~~ typemap_utils.cpp: In function 'int get_attr_material(PyObject*, meep_geom::material_data**)': typemap_utils.cpp:313:7: warning: variable 'rval' set but not used [-Wunused-but-set-variable] 313 | int rval = 1; | ^~~~ typemap_utils.cpp: In function 'int pymaterial_grid_to_material_grid(PyObject*, meep_geom::material_data*)': typemap_utils.cpp:459:68: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 459 | default: meep::abort("Invalid material grid enumeration code: %d.\n", gt_enum); | ~^ ~~~~~~~ | | | | int long int | %ld typemap_utils.cpp: At global scope: typemap_utils.cpp:1007:18: warning: 'PyObject* gobj_list_to_py_list(geometric_object_list*)' defined but not used [-Wunused-function] 1007 | static PyObject *gobj_list_to_py_list(geometric_object_list *objs) { | ^~~~~~~~~~~~~~~~~~~~ typemap_utils.cpp:98:18: warning: 'PyObject* py_volume_object()' defined but not used [-Wunused-function] 98 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ typemap_utils.cpp: In function 'int pymaterial_to_material(PyObject*, meep_geom::material_data**)': typemap_utils.cpp:565:7: warning: 'md' may be used uninitialized in this function [-Wmaybe-uninitialized] 565 | *mt = md; | ~~~~^~~~ libtool: compile: i686-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb-python.cxx -fPIC -DPIC -o _mpb_la-mpb-python.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python3.9/site-packages/meep/mpb _mpb_la-mpb-python.lo ../libpympb/libpympb.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath libtool: link: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/_mpb_la-mpb-python.o -Wl,-rpath -Wl,/build/meep-1.17.1/libpympb/.libs ../libpympb/.libs/libpympb.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.23 -o .libs/_mpb.so.23.0.1 libtool: link: (cd ".libs" && rm -f "_mpb.so.23" && ln -s "_mpb.so.23.0.1" "_mpb.so.23") libtool: link: (cd ".libs" && rm -f "_mpb.so" && ln -s "_mpb.so.23.0.1" "_mpb.so") libtool: link: i686-linux-gnu-ar cr .libs/_mpb.a _mpb_la-mpb-python.o libtool: link: i686-linux-gnu-ranlib .libs/_mpb.a libtool: link: ( cd ".libs" && rm -f "_mpb.la" && ln -s "../_mpb.la" "_mpb.la" ) mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./visualization.py ./materials.py ./verbosity_mgr.py .libs/_meep.so meep mkdir -p meep/mpb cp .libs/_mpb.so meep/mpb cp ./mpb.py meep/mpb/__init__.py cp ./solver.py ./mpb_data.py meep/mpb make[4]: Leaving directory '/build/meep-1.17.1/python' make[3]: Leaving directory '/build/meep-1.17.1/python' make[3]: Entering directory '/build/meep-1.17.1' cp -f ./meep-pkgconfig meep.pc make[3]: Leaving directory '/build/meep-1.17.1' make[2]: Leaving directory '/build/meep-1.17.1' make[1]: Leaving directory '/build/meep-1.17.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/meep-1.17.1' dh_installchangelogs NEWS.md dh_auto_install make -j1 install DESTDIR=/build/meep-1.17.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/meep-1.17.1' Making install in src make[3]: Entering directory '/build/meep-1.17.1/src' make install-recursive make[4]: Entering directory '/build/meep-1.17.1/src' Making install in support make[5]: Entering directory '/build/meep-1.17.1/src/support' make[6]: Entering directory '/build/meep-1.17.1/src/support' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/meep-1.17.1/src/support' make[5]: Leaving directory '/build/meep-1.17.1/src/support' make[5]: Entering directory '/build/meep-1.17.1/src' make[6]: Entering directory '/build/meep-1.17.1/src' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.23.0.1 /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.23.0.1 libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so.23 || { rm -f libmeep.so.23 && ln -s libmeep.so.23.0.1 libmeep.so.23; }; }) libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.23.0.1 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: install: chmod 644 /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: install: i686-linux-gnu-ranlib /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-1.17.1/debian/tmp/usr/include' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp meepgeom.hpp material_data.hpp adjust_verbosity.hpp '/build/meep-1.17.1/debian/tmp/usr/include/meep' make[6]: Leaving directory '/build/meep-1.17.1/src' make[5]: Leaving directory '/build/meep-1.17.1/src' make[4]: Leaving directory '/build/meep-1.17.1/src' make[3]: Leaving directory '/build/meep-1.17.1/src' Making install in tests make[3]: Entering directory '/build/meep-1.17.1/tests' make[4]: Entering directory '/build/meep-1.17.1/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/meep-1.17.1/tests' make[3]: Leaving directory '/build/meep-1.17.1/tests' Making install in scheme make[3]: Entering directory '/build/meep-1.17.1/scheme' make install-am make[4]: Entering directory '/build/meep-1.17.1/scheme' make[5]: Entering directory '/build/meep-1.17.1/scheme' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-1.17.1/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-1.17.1/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-1.17.1/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-1.17.1/scheme' make[4]: Leaving directory '/build/meep-1.17.1/scheme' make[3]: Leaving directory '/build/meep-1.17.1/scheme' Making install in libpympb make[3]: Entering directory '/build/meep-1.17.1/libpympb' make[4]: Entering directory '/build/meep-1.17.1/libpympb' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libpympb.la '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu' libtool: warning: relinking 'libpympb.la' libtool: install: (cd /build/meep-1.17.1/libpympb; /bin/bash "/build/meep-1.17.1/libtool" --tag CXX --mode=relink i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o libpympb.la -rpath /usr/lib/i386-linux-gnu libpympb_la-pympb.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.17.1/debian/tmp) libtool: relink: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/libpympb_la-pympb.o -L/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,libpympb.so.23 -o .libs/libpympb.so.23.0.1 libtool: install: /usr/bin/install -c .libs/libpympb.so.23.0.1T /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libpympb.so.23.0.1 libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpympb.so.23.0.1 libpympb.so.23 || { rm -f libpympb.so.23 && ln -s libpympb.so.23.0.1 libpympb.so.23; }; }) libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpympb.so.23.0.1 libpympb.so || { rm -f libpympb.so && ln -s libpympb.so.23.0.1 libpympb.so; }; }) libtool: install: /usr/bin/install -c .libs/libpympb.lai /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libpympb.la libtool: install: /usr/bin/install -c .libs/libpympb.a /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libpympb.a libtool: install: chmod 644 /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libpympb.a libtool: install: i686-linux-gnu-ranlib /build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/libpympb.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 pympb.hpp '/build/meep-1.17.1/debian/tmp/usr/include/meep' make[4]: Leaving directory '/build/meep-1.17.1/libpympb' make[3]: Leaving directory '/build/meep-1.17.1/libpympb' Making install in python make[3]: Entering directory '/build/meep-1.17.1/python' make install-am make[4]: Entering directory '/build/meep-1.17.1/python' make[5]: Entering directory '/build/meep-1.17.1/python' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' libtool: warning: relinking '_meep.la' libtool: install: (cd /build/meep-1.17.1/python; /bin/bash "/build/meep-1.17.1/libtool" --tag CXX --mode=relink i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.17.1/debian/tmp) libtool: relink: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: install: /usr/bin/install -c .libs/_meep.so.23.0.1T /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so.23 || { rm -f _meep.so.23 && ln -s _meep.so.23.0.1 _meep.so.23; }; }) libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so || { rm -f _meep.so && ln -s _meep.so.23.0.1 _meep.so; }; }) libtool: install: /usr/bin/install -c .libs/_meep.lai /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.la libtool: install: /usr/bin/install -c .libs/_meep.a /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: install: chmod 644 /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: install: i686-linux-gnu-ranlib /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3.9/site-packages/meep' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint' /usr/bin/install -c -m 644 ./adjoint/__init__.py ./adjoint/basis.py ./adjoint/objective.py ./adjoint/optimization_problem.py ./adjoint/filters.py ./adjoint/filter_source.py '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint' Byte-compiling python modules... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.py Byte-compiling python modules (optimized versions) ... __init__.pybasis.pyobjective.pyoptimization_problem.pyfilters.pyfilter_source.py /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' /usr/bin/install -c -m 644 __init__.py ./geom.py ./simulation.py ./source.py ./visualization.py ./materials.py ./verbosity_mgr.py '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' Byte-compiling python modules... __init__.pygeom.pysimulation.pysource.pyvisualization.pymaterials.pyverbosity_mgr.py Byte-compiling python modules (optimized versions) ... __init__.pygeom.pysimulation.pysource.pyvisualization.pymaterials.pyverbosity_mgr.py /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb' /bin/bash ../libtool --mode=install /usr/bin/install -c _mpb.la '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb' libtool: warning: relinking '_mpb.la' libtool: install: (cd /build/meep-1.17.1/python; /bin/bash "/build/meep-1.17.1/libtool" --tag CXX --mode=relink i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/meep-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -o _mpb.la -rpath /usr/lib/python3.9/site-packages/meep/mpb _mpb_la-mpb-python.lo ../libpympb/libpympb.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lmpb -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-1.17.1/debian/tmp) libtool: relink: i686-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/10/crtbeginS.o .libs/_mpb_la-mpb-python.o -L/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lpympb -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas /usr/lib/libmpb.a -lharminv -llapack -lblas -L/usr/lib/gcc/i686-linux-gnu/10 -L/usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/10/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/10/../../.. -L/usr/lib/i386-linux-gnu/hdf5/serial -lfftw3 -lgfortran -lquadmath -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/10/crtendS.o /usr/lib/gcc/i686-linux-gnu/10/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-soname -Wl,_mpb.so.23 -o .libs/_mpb.so.23.0.1 libtool: install: /usr/bin/install -c .libs/_mpb.so.23.0.1T /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.so.23.0.1 libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb && { ln -s -f _mpb.so.23.0.1 _mpb.so.23 || { rm -f _mpb.so.23 && ln -s _mpb.so.23.0.1 _mpb.so.23; }; }) libtool: install: (cd /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb && { ln -s -f _mpb.so.23.0.1 _mpb.so || { rm -f _mpb.so && ln -s _mpb.so.23.0.1 _mpb.so; }; }) libtool: install: /usr/bin/install -c .libs/_mpb.lai /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.la libtool: install: /usr/bin/install -c .libs/_mpb.a /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.a libtool: install: chmod 644 /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.a libtool: install: i686-linux-gnu-ranlib /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.a libtool: warning: remember to run 'libtool --finish /usr/lib/python3.9/site-packages/meep/mpb' /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb' /usr/bin/install -c -m 644 mpb.py solver.py mpb_data.py '/build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb' Byte-compiling python modules... mpb.pysolver.pympb_data.py Byte-compiling python modules (optimized versions) ... mpb.pysolver.pympb_data.py make install-data-hook make[6]: Entering directory '/build/meep-1.17.1/python' mv /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/mpb.py /build/meep-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__init__.py make[6]: Leaving directory '/build/meep-1.17.1/python' make[5]: Leaving directory '/build/meep-1.17.1/python' make[4]: Leaving directory '/build/meep-1.17.1/python' make[3]: Leaving directory '/build/meep-1.17.1/python' make[3]: Entering directory '/build/meep-1.17.1' make[4]: Entering directory '/build/meep-1.17.1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-1.17.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-1.17.1' make[3]: Leaving directory '/build/meep-1.17.1' make[2]: Leaving directory '/build/meep-1.17.1' find . ./config.h.in ./meep-pkgconfig ./config.h ./debian ./debian/python3-meep.postinst ./debian/debhelper-build-stamp ./debian/meep ./debian/meep/usr ./debian/meep/usr/share ./debian/meep/usr/share/doc ./debian/meep/usr/share/doc/meep ./debian/meep/usr/share/doc/meep/changelog.Debian ./debian/meep/usr/share/doc/meep/changelog ./debian/README.source ./debian/meep.install ./debian/autoreconf.after ./debian/control ./debian/missing-sources ./debian/missing-sources/highlight.js ./debian/missing-sources/modernizr-2.8.3.js ./debian/missing-sources/jquery-2.1.1.js ./debian/meep.docs ./debian/libmeep23 ./debian/libmeep23/usr ./debian/libmeep23/usr/share ./debian/libmeep23/usr/share/doc ./debian/libmeep23/usr/share/doc/libmeep23 ./debian/libmeep23/usr/share/doc/libmeep23/changelog.Debian ./debian/libmeep23/usr/share/doc/libmeep23/changelog ./debian/libmeep23.install ./debian/libmeep-dev.debhelper.log ./debian/libmeep23.lintian-overrides ./debian/libmeep23.debhelper.log ./debian/patches ./debian/patches/series ./debian/rules ./debian/changelog ./debian/meep.debhelper.log ./debian/libmeep-dev.install ./debian/python3-meep.debhelper.log ./debian/tmp ./debian/tmp/usr ./debian/tmp/usr/bin ./debian/tmp/usr/bin/meep ./debian/tmp/usr/lib ./debian/tmp/usr/lib/i386-linux-gnu ./debian/tmp/usr/lib/i386-linux-gnu/libpympb.so.23.0.1 ./debian/tmp/usr/lib/i386-linux-gnu/libmeep.a ./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.23 ./debian/tmp/usr/lib/i386-linux-gnu/libpympb.so.23 ./debian/tmp/usr/lib/i386-linux-gnu/libpympb.la ./debian/tmp/usr/lib/i386-linux-gnu/libmeep.la ./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.23.0.1 ./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig ./debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/meep.pc ./debian/tmp/usr/lib/i386-linux-gnu/libpympb.a ./debian/tmp/usr/lib/i386-linux-gnu/libmeep.so ./debian/tmp/usr/lib/i386-linux-gnu/libpympb.so ./debian/tmp/usr/lib/python3.9 ./debian/tmp/usr/lib/python3.9/site-packages ./debian/tmp/usr/lib/python3.9/site-packages/meep ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so ./debian/tmp/usr/lib/python3.9/site-packages/meep/materials.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.so.23.0.1 ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/mpb_data.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.so ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__init__.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.so.23 ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__ ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/mpb.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/solver.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/mpb.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/mpb_data.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/solver.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/__pycache__/mpb_data.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/solver.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.la ./debian/tmp/usr/lib/python3.9/site-packages/meep/mpb/_mpb.a ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23 ./debian/tmp/usr/lib/python3.9/site-packages/meep/__init__.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/verbosity_mgr.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/source.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/optimization_problem.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__init__.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/basis.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/objective.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__ ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/objective.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filter_source.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filter_source.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filters.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/basis.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/__init__.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/filters.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/objective.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/__init__.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/basis.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/__pycache__/optimization_problem.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/filters.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/adjoint/filter_source.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__ ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/geom.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/source.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/visualization.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/geom.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/source.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/verbosity_mgr.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/verbosity_mgr.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/__init__.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/materials.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/__init__.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/materials.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/simulation.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/simulation.cpython-39.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/__pycache__/visualization.cpython-39.opt-1.pyc ./debian/tmp/usr/lib/python3.9/site-packages/meep/visualization.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.la ./debian/tmp/usr/lib/python3.9/site-packages/meep/geom.py ./debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.a ./debian/tmp/usr/lib/python3.9/site-packages/meep/simulation.py ./debian/tmp/usr/include ./debian/tmp/usr/include/meep ./debian/tmp/usr/include/meep/pympb.hpp ./debian/tmp/usr/include/meep/meepgeom.hpp ./debian/tmp/usr/include/meep/adjust_verbosity.hpp ./debian/tmp/usr/include/meep/material_data.hpp ./debian/tmp/usr/include/meep/mympi.hpp ./debian/tmp/usr/include/meep/vec.hpp ./debian/tmp/usr/include/meep.hpp ./debian/tmp/usr/share ./debian/tmp/usr/share/meep ./debian/tmp/usr/share/meep/meep.scm ./debian/tmp/usr/share/meep/meep-enums.scm ./debian/tmp/usr/share/meep/materials.scm ./debian/tmp/usr/share/meep/casimir.scm ./debian/python3-meep.install ./debian/python3-meep.prerm ./debian/libmeep-dev ./debian/libmeep-dev/usr ./debian/libmeep-dev/usr/share ./debian/libmeep-dev/usr/share/doc ./debian/libmeep-dev/usr/share/doc/libmeep-dev ./debian/libmeep-dev/usr/share/doc/libmeep-dev/changelog.Debian ./debian/libmeep-dev/usr/share/doc/libmeep-dev/changelog ./debian/source ./debian/source/format ./debian/source/lintian-overrides ./debian/meep.manpages ./debian/autoreconf.before ./debian/docs ./debian/watch ./debian/copyright ./debian/python3-meep ./debian/python3-meep/usr ./debian/python3-meep/usr/share ./debian/python3-meep/usr/share/doc ./debian/python3-meep/usr/share/doc/python3-meep ./debian/python3-meep/usr/share/doc/python3-meep/changelog.Debian ./debian/python3-meep/usr/share/doc/python3-meep/changelog ./debian/meep.1 ./codemeta.json ./.gitignore ./version.sh ./libtool ./AUTHORS ./src ./src/near2far.o ./src/dft.lo ./src/mpb.o ./src/array_slice.cpp ./src/cw_fields.cpp ./src/output_directory.cpp ./src/integrate.lo ./src/cw_fields.lo ./src/output_directory.o ./src/step.o ./src/sphere-quad.o ./src/stress.o ./src/output_directory.lo ./src/time.cpp ./src/step_generic.lo ./src/meep ./src/meep/mympi.hpp ./src/meep/vec.hpp ./src/structure_dump.o ./src/susceptibility.cpp ./src/meepgeom.cpp ./src/step_db.o ./src/multilevel-atom.cpp ./src/energy_and_flux.o ./src/dft.cpp ./src/dft_ldos.lo ./src/boundaries.cpp ./src/multilevel-atom.lo ./src/GDSIIgeom.cpp ./src/susceptibility.o 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./doc/docs/images/waveguide_rotation_glancing.png ./doc/docs/images/multi_mode_eigsource_pulse_A.png ./doc/docs/images/meep_salt_comparison_full.png ./doc/docs/images/refl_coeff_vs_taper_length.png ./doc/docs/images/Fabryperot.gif ./doc/docs/images/Python-Tutorial-wvg-bent-ez-tslice.png ./doc/docs/images/Metalcavity_ldos.png ./doc/docs/images/Tut-bend-flux.png ./doc/docs/images/Tutorial-wvg-straight-ez-000200.00.png ./doc/docs/images/stochastic_emitter_normalized_flux_comparison.png ./doc/docs/images/coupler3D.png ./doc/docs/images/phase-in-material.png ./doc/docs/images/PermittivityWithLabeledAxes.png ./doc/docs/images/multilevel_meep_n0_37_spectra.png ./doc/docs/images/gaussian_beam.png ./doc/docs/images/pwsource_Ez_PML.png ./doc/docs/images/pml_glancing_field.png ./doc/docs/images/Spheres-plane.jpg ./doc/docs/images/Waveguide_forces.png ./doc/docs/images/Tut-ring-ez-0.118.gif ./doc/docs/images/Python-Tutorial-wvg-straight-ez-000200.00.png ./doc/docs/images/power_density_map.png ./doc/docs/images/reflectance_angular_spectrum.png ./doc/docs/images/ring_resonator_gds_Hz.png ./doc/docs/images/Holey-wvg-cavity-hz.gif ./doc/docs/images/ring_matfunc_freq_vs_resolution.png ./doc/docs/images/Surface-force.jpg ./doc/docs/images/Chunks_NP8.png ./doc/docs/images/Holey-wvg-cavity-hz-001401.23.png ./doc/docs/images/Holey-wvg-kx=0.4-w=0.1896.gif ./doc/docs/images/Vac.jpg ./doc/docs/images/polarization_grating_diffraction_orders.png ./doc/docs/images/Holey-wvg-bands-eps-000000.00.png ./doc/docs/images/parallel_benchmark_DFT.png ./doc/docs/images/3rd-harm-1d-vs-chi.png ./doc/docs/images/swig_process.png ./doc/docs/images/Extruded-blocks.jpg ./doc/docs/images/ring_vary_radius.png ./doc/docs/images/cherenkov_radiation.png ./doc/docs/images/Material-dispersion-epsim.png ./doc/docs/images/Dblocks-force.jpg ./doc/docs/images/Near2far_simulation_geometry.png ./doc/docs/images/Meep-banner.png ./doc/docs/images/grating_diffraction_spectra_n2f.png ./doc/docs/images/Holey-wvg-cavity-eps-000000.00.png ./doc/docs/images/meep_salt_comparison_thresh.png ./doc/docs/images/BentFluxGeometryVisualization.png ./doc/docs/images/metasurface_lens_farfield.png ./doc/docs/images/Tut-ring-ez-0.175.gif ./doc/docs/images/ring_freq_vs_resolution.png ./doc/docs/images/parallel_benchmark_barplot.png ./doc/docs/images/Faraday-rotation.png ./doc/docs/images/Holey-wvg-kx=0.25-w=0.2506.gif ./doc/docs/Replacements.vim ./doc/docs/Developer_Codes ./doc/docs/Developer_Codes/Makefile.manual ./doc/docs/Developer_Codes/WriteChunkInfo.cpp ./doc/docs/Exploiting_Symmetry.md ./doc/docs/Acknowledgements.md ./doc/docs/Parallel_Meep.md ./doc/docs/Download.md ./doc/docs/Python_Tutorials ./doc/docs/Python_Tutorials/Third_Harmonic_Generation.md ./doc/docs/Python_Tutorials/Gyrotropic_Media.md ./doc/docs/Python_Tutorials/Material_Dispersion.md ./doc/docs/Python_Tutorials/Basics.md ./doc/docs/Python_Tutorials/Eigenmode_Source.md ./doc/docs/Python_Tutorials/Optical_Forces.md ./doc/docs/Python_Tutorials/Cylindrical_Coordinates.md ./doc/docs/Python_Tutorials/Mode_Decomposition.md ./doc/docs/Python_Tutorials/Custom_Source.md ./doc/docs/Python_Tutorials/AdjointSolver.md ./doc/docs/Python_Tutorials/Near_to_Far_Field_Spectra.md ./doc/docs/Python_Tutorials/Frequency_Domain_Solver.md ./doc/docs/Python_Tutorials/Local_Density_of_States.md ./doc/docs/Python_Tutorials/GDSII_Import.md ./doc/docs/Python_Tutorials/Resonant_Modes_and_Transmission_in_a_Waveguide_Cavity.md ./doc/docs/Python_Tutorials/Multilevel_Atomic_Susceptibility.md ./doc/docs/Subpixel_Smoothing.md ./doc/docs/Installation.md ./doc/docs/Perfectly_Matched_Layer.md ./doc/docs/Units_and_Nonlinearity.md ./doc/docs/Eigensolver_Math.md ./doc/docs/FAQ.md ./doc/docs/Mode_Decomposition.md ./doc/docs/Synchronizing_the_Magnetic_and_Electric_Fields.md ./doc/docs/License_and_Copyright.md ./doc/docs/The_Run_Function_Is_Not_A_Loop.md ./doc/docs/mdx_math.py ./doc/docs/Python_Developer_Information.md ./doc/docs/Guile_and_Scheme_Information.md ./doc/docs/Scheme_Tutorials ./doc/docs/Scheme_Tutorials/Third_Harmonic_Generation.md ./doc/docs/Scheme_Tutorials/Gyrotropic_Media.md ./doc/docs/Scheme_Tutorials/Material_Dispersion.md ./doc/docs/Scheme_Tutorials/Basics.md ./doc/docs/Scheme_Tutorials/Casimir_Forces.md ./doc/docs/Scheme_Tutorials/Eigenmode_Source.md ./doc/docs/Scheme_Tutorials/Optical_Forces.md ./doc/docs/Scheme_Tutorials/Cylindrical_Coordinates.md ./doc/docs/Scheme_Tutorials/Mode_Decomposition.md ./doc/docs/Scheme_Tutorials/Custom_Source.md ./doc/docs/Scheme_Tutorials/Near_to_Far_Field_Spectra.md ./doc/docs/Scheme_Tutorials/Frequency_Domain_Solver.md ./doc/docs/Scheme_Tutorials/Local_Density_of_States.md ./doc/docs/Scheme_Tutorials/Resonant_Modes_and_Transmission_in_a_Waveguide_Cavity.md ./doc/docs/Scheme_Tutorials/Multilevel_Atomic_Susceptibility.md ./doc/docs/Yee_Lattice.md ./doc/docs/Python_User_Interface.md ./doc/docs/C++_Developer_Information.md ./doc/docs/setup.py ./doc/docs/index.md ./doc/docs/C++_Tutorial.md ./doc/docs/css ./doc/docs/css/extra.css ./doc/docs/Build_From_Source.md ./doc/docs/Python_User_Interface.md.in ./doc/docs/mathjaxhelper.js ./doc/docs/Introduction.md ./doc/docs/Field_Functions.md ./doc/docs/Chunks_and_Symmetry.md ./doc/docs/Scheme_User_Interface.md ./doc/docs/2d_Cell_Special_kz.md ./config.sub ./depcomp ./test-driver ./README.md ./tests ./tests/convergence_cyl_waveguide.cpp ./tests/cylindrical.cpp ./tests/pw-source-ll.cpp ./tests/array-slice-ll-ref.h5 ./tests/bragg_transmission.cpp ./tests/cyl-ellipsoid.ctl ./tests/stress_tensor.cpp ./tests/gdsII-3d.gds ./tests/gdsII-3d.cpp ./tests/two_dimensional.cpp ./tests/flux.cpp ./tests/integrate.cpp ./tests/2D_convergence.cpp ./tests/bend-flux-ll.cpp ./tests/array-slice-ll.cpp ./tests/Makefile ./tests/Makefile.am ./tests/physical.cpp ./tests/one_dimensional.cpp ./tests/ring-ll.cpp ./tests/symmetry.cpp ./tests/Makefile.in ./tests/three_d.cpp ./tests/bench.cpp ./tests/pml.cpp ./tests/known_results.cpp ./tests/harmonics.cpp ./tests/h5test.cpp ./tests/user-defined-material.cpp ./tests/dft-fields.cpp ./tests/array-metadata.cpp ./tests/cyl-ellipsoid-eps-ref.h5 ./tests/absorber-1d-ll.cpp ./tests/aniso_disp.cpp ./tests/cyl-ellipsoid-ll.cpp ./tests/near2far.cpp ./scheme ./scheme/meep_enum_renames.i ./scheme/meep_swig_bug_workaround.i ./scheme/meep_wrap.patch ./scheme/meep-meep.o ./scheme/meep ./scheme/meep-ctl-io.o ./scheme/meep-structure.o ./scheme/meep.scm ./scheme/meep-main.o ./scheme/meep.cpp ./scheme/meep-enums.scm ./scheme/meep_op_renames.i ./scheme/materials.scm ./scheme/ctl-io.cpp ./scheme/meep_renames.i ./scheme/meep-ctl.hpp ./scheme/structure.cpp ./scheme/meep-ctl-const.hpp ./scheme/meep.i ./scheme/Makefile ./scheme/Makefile.am ./scheme/.libs ./scheme/.libs/meep ./scheme/meep-geom.o ./scheme/geom.cpp ./scheme/main.cpp ./scheme/ctl-io.h ./scheme/Makefile.in ./scheme/meep_wrap.cxx.bak ./scheme/meep.scm.in ./scheme/meep_wrap.cxx.orig ./scheme/meep-meep_wrap.o ./scheme/examples ./scheme/examples/metasurface_lens_farfield.ctl ./scheme/examples/metal-cavity-ldos.ctl ./scheme/examples/group-velocity.ctl ./scheme/examples/binary_grating_n2f.ctl ./scheme/examples/binary_grating.ctl ./scheme/examples/holey-wvg-bands.ctl ./scheme/examples/parallel-wvgs-mpb.ctl ./scheme/examples/metasurface_lens_phasemap.ctl ./scheme/examples/refl-quartz.ctl ./scheme/examples/antenna-radiation.ctl ./scheme/examples/pw-source.ctl ./scheme/examples/absorbed-power-density.ctl ./scheme/examples/cavity-farfield.ctl ./scheme/examples/binary_grating_oblique.ctl ./scheme/examples/perturbation-theory-2d.ctl ./scheme/examples/finite_grating.ctl ./scheme/examples/stochastic-emitter.ctl ./scheme/examples/chirped-pulse.ctl ./scheme/examples/differential-cross-section.ctl ./scheme/examples/multilevel-atom.ctl ./scheme/examples/bent-waveguide.ctl ./scheme/examples/straight-waveguide.ctl ./scheme/examples/mie-scattering.ctl ./scheme/examples/ring-cyl.ctl ./scheme/examples/3rd-harm-1d.ctl ./scheme/examples/binary_grating_phasemap.ctl ./scheme/examples/mode-coeffs.ctl ./scheme/examples/ring.ctl ./scheme/examples/refl-angular.ctl ./scheme/examples/gaussian-beam.ctl ./scheme/examples/faraday-rotation.ctl ./scheme/examples/perturbation-theory.ctl ./scheme/examples/zone-plate.ctl ./scheme/examples/cylinder-cross-section.ctl ./scheme/examples/oblique-planewave.ctl ./scheme/examples/polarization_grating.ctl ./scheme/examples/cherenkov-radiation.ctl ./scheme/examples/mode-decomposition.ctl ./scheme/examples/parallel-wvgs-force.ctl ./scheme/examples/material-dispersion.ctl ./scheme/examples/oblique-source.ctl ./scheme/examples/wvg_src.ctl ./scheme/examples/bend-flux.ctl ./scheme/examples/solve-cw.ctl ./scheme/examples/refl-angular-kz2d.ctl ./scheme/examples/holey-wvg-cavity.ctl ./scheme/meep-ctl-swig.hpp ./scheme/casimir.scm ./scheme/ctl-io.i ./scheme/meep_wrap.cxx ./install-sh ./autogen.sh ./missing ./TODO ./py-compile ./libpympb ./libpympb/libpympb.la ./libpympb/pympb.hpp ./libpympb/libpympb_la-pympb.lo ./libpympb/Makefile ./libpympb/Makefile.am ./libpympb/.libs ./libpympb/.libs/libpympb.so.23.0.1 ./libpympb/.libs/libpympb.lai ./libpympb/.libs/libpympb.so.23 ./libpympb/.libs/libpympb.la ./libpympb/.libs/libpympb.a ./libpympb/.libs/libpympb.so.23.0.1T ./libpympb/.libs/libpympb_la-pympb.o ./libpympb/.libs/libpympb.so ./libpympb/Makefile.in ./libpympb/pympb.cpp ./libpympb/libpympb_la-pympb.o ./config.guess ./configure.ac rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/adjoint/*.pyc rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/adjoint/*.pyo rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyc rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyo rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/*.a rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/*.la rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.pyc rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.pyo rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.a rm -f -f debian/tmp/usr/lib/python*/site-packages/meep/mpb/*.la rm -f -rf debian/tmp/usr/lib/python*/site-packages/meep/__pycache__/ rm -f -rf debian/tmp/usr/lib/python*/site-packages/meep/adjoint/__pycache__/ rm -f -rf debian/tmp/usr/lib/python*/site-packages/meep/mpb/__pycache__/ make[1]: Leaving directory '/build/meep-1.17.1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_missing: warning: usr/lib/i386-linux-gnu/libmeep.la exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/i386-linux-gnu/libpympb.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libmeep-dev (6), libmeep23 (5), meep (1), python3-meep (1) * dh_installdocs: libmeep-dev (0), libmeep23 (0), meep (1), python3-meep (0) * dh_installman: libmeep-dev (0), libmeep23 (0), meep (1), python3-meep (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "i386-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/python3-meep/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PyComplex_Type: it's probably a plugin dpkg-shlibdeps: warning: 108 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-meep/usr/lib/python3/dist-packages/meep/mpb/_mpb.so.23.0.1 contains an unresolvable reference to symbol PyExc_ValueError: it's probably a plugin dpkg-shlibdeps: warning: 98 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'meep' in '../meep_1.17.1-1_i386.deb'. dpkg-deb: building package 'meep-dbgsym' in '../meep-dbgsym_1.17.1-1_i386.deb'. dpkg-deb: building package 'libmeep23' in '../libmeep23_1.17.1-1_i386.deb'. dpkg-deb: building package 'libmeep23-dbgsym' in '../libmeep23-dbgsym_1.17.1-1_i386.deb'. dpkg-deb: building package 'libmeep-dev' in '../libmeep-dev_1.17.1-1_i386.deb'. dpkg-deb: building package 'python3-meep' in '../python3-meep_1.17.1-1_i386.deb'. dpkg-deb: building package 'python3-meep-dbgsym' in '../python3-meep-dbgsym_1.17.1-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep_1.17.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39566 and its subdirectories I: Current time: Wed Sep 14 19:34:00 -12 2022 I: pbuilder-time-stamp: 1663227240 Fri Aug 13 01:11:01 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Fri Aug 13 01:11:01 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Fri Aug 13 01:38:01 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Fri Aug 13 01:38:01 UTC 2021 I: meep_1.17.1-1_i386.changes: Format: 1.8 Date: Thu, 28 Jan 2021 19:02:15 +0000 Source: meep Binary: libmeep-dev libmeep23 libmeep23-dbgsym meep meep-dbgsym python3-meep python3-meep-dbgsym Architecture: i386 Version: 1.17.1-1 Distribution: unstable Urgency: medium Maintainer: Thorsten Alteholz Changed-By: Thorsten Alteholz Description: libmeep-dev - development library for using meep libmeep23 - library for using meep meep - software package for FDTD simulation python3-meep - software package for FDTD simulation with Python Closes: 969693 979815 Changes: meep (1.17.1-1) unstable; urgency=medium . * New upstream release * debian/control: fix dependencies (Closes: #979815) * debian/control: close guile-3.0 bug (Closes: #969693) (realy fixed in 1.16.1-3) Checksums-Sha1: 9fa241c0447f3bb3127d838562457d26815eb7eb 442848 libmeep-dev_1.17.1-1_i386.deb 3248f9bd76cc87bdc81f81b7b8c4bb5b0ea5fbfe 1896008 libmeep23-dbgsym_1.17.1-1_i386.deb 1849e4d9d05747edd8e0f342cbac85cc34fefcbd 445440 libmeep23_1.17.1-1_i386.deb 9c3d460b18e70426eeaa1e98f5e8b2cc964b3316 1633144 meep-dbgsym_1.17.1-1_i386.deb 349093c9961d93a7b6334f152abb62e9758d9902 10521 meep_1.17.1-1_i386.buildinfo defb95a5d216ff407576268552964fc2fe799995 288800 meep_1.17.1-1_i386.deb 8d41981e69b0fb716e7e609723f6271aa615691b 4229504 python3-meep-dbgsym_1.17.1-1_i386.deb d9dd875384916abac98d3e4b82f6abaea6e0167d 762844 python3-meep_1.17.1-1_i386.deb Checksums-Sha256: 7646cfa15326bdae0df362087925e2813a1e5c4ddc850deec8fdb42c41b9beb4 442848 libmeep-dev_1.17.1-1_i386.deb 3e8f1f36d45c45e491eeeead1786d983ec37b67880463471e267ef93e9e45791 1896008 libmeep23-dbgsym_1.17.1-1_i386.deb 17ee3ff5263f946c02ce9977858465ee96392538e5b58a34a877414a76f5c698 445440 libmeep23_1.17.1-1_i386.deb ae28ffdecc62635ef80a3b50fdeca629443d517a2e00947b35b55725bf49ee85 1633144 meep-dbgsym_1.17.1-1_i386.deb 52262de58f607f055e4232599832d0f0d744b2f64af065202c009a9416f87244 10521 meep_1.17.1-1_i386.buildinfo 08ab73bfca96f22d64c762bbcfabeb492ed13e8cfd2710fea679db5471811f4a 288800 meep_1.17.1-1_i386.deb f80e44c17df1cf1c2258c79e62e085d70a7e4662300e1bdc6219df26790fb1ea 4229504 python3-meep-dbgsym_1.17.1-1_i386.deb 61a7a34a72b9166d284d985599d9496d3525165cdc652666b38d21ec82d42776 762844 python3-meep_1.17.1-1_i386.deb Files: 1d5455543149e1428657d1366d367b35 442848 libdevel optional libmeep-dev_1.17.1-1_i386.deb 18c5fd67e2023d38849e5f567ef24510 1896008 debug optional libmeep23-dbgsym_1.17.1-1_i386.deb cef88176433ef99a55e9380fc740131a 445440 libs optional libmeep23_1.17.1-1_i386.deb 897f02dc946a56df71a638c53d5b92b6 1633144 debug optional meep-dbgsym_1.17.1-1_i386.deb 1e33e430096aaaa56e2ce0cc1923e758 10521 science optional meep_1.17.1-1_i386.buildinfo f028630000628bf5ec861f01f4c987da 288800 science optional meep_1.17.1-1_i386.deb f0cee34f673876f603315a68dba88bc5 4229504 debug optional python3-meep-dbgsym_1.17.1-1_i386.deb 7d0676c835158e403c39e8290a9cc864 762844 python optional python3-meep_1.17.1-1_i386.deb Fri Aug 13 01:38:03 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/meep_1.17.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/meep_1.17.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/meep_1.17.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/b1/meep_1.17.1-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.QocQt9a8MQ/b2/meep_1.17.1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.471s) 0.471s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.208s) 0.207s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Aug 13 01:38:05 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 13 01:38:05 UTC 2021 I: meep from bullseye built successfully and reproducibly on i386. Fri Aug 13 01:38:06 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Aug 13 01:38:06 UTC 2021 I: Submitting 12K b1/meep_1.17.1-1_i386.buildinfo.asc Fri Aug 13 01:38:08 UTC 2021 I: Submitting 12K b2/meep_1.17.1-1_i386.buildinfo.asc Fri Aug 13 01:38:09 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 13 01:38:09 UTC 2021 I: Done submitting .buildinfo files. Fri Aug 13 01:38:09 UTC 2021 I: Removing signed meep_1.17.1-1_i386.buildinfo.asc files: removed './b1/meep_1.17.1-1_i386.buildinfo.asc' removed './b2/meep_1.17.1-1_i386.buildinfo.asc'