Mon Jul 19 21:42:37 UTC 2021 I: starting to build scrappie/bullseye/i386 on jenkins on '2021-07-19 21:42' Mon Jul 19 21:42:37 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/13139/console.log Mon Jul 19 21:42:37 UTC 2021 I: Downloading source for bullseye/scrappie=1.4.2-7 --2021-07-19 21:42:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/scrappie/scrappie_1.4.2-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2110 (2.1K) Saving to: ‘scrappie_1.4.2-7.dsc’ 0K .. 100% 195M=0s 2021-07-19 21:42:37 (195 MB/s) - ‘scrappie_1.4.2-7.dsc’ saved [2110/2110] Mon Jul 19 21:42:38 UTC 2021 I: scrappie_1.4.2-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: scrappie Binary: scrappie Architecture: any Version: 1.4.2-7 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://github.com/nanoporetech/scrappie Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/scrappie Vcs-Git: https://salsa.debian.org/med-team/scrappie.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev Package-List: scrappie deb science optional arch=any Checksums-Sha1: 8b814eb0c20e2280711cd7343ad23ecc4f46dd77 21753974 scrappie_1.4.2.orig.tar.gz 930624fd3a03a48b5cb642215c7bdbb8c1ba65b0 14208 scrappie_1.4.2-7.debian.tar.xz Checksums-Sha256: 160f3e462a6e079e55da4de8d3bd232243ff988530cfe649038feccc9bb79797 21753974 scrappie_1.4.2.orig.tar.gz 67461446aa9436ad6dec449fef5b0b46b8cecbf1392ab430fc0876dc042a75c5 14208 scrappie_1.4.2-7.debian.tar.xz Files: 12e5332496f8c329af9f1e968cbc96dc 21753974 scrappie_1.4.2.orig.tar.gz a2ab61c3b3b09be70dfa62094133a779 14208 scrappie_1.4.2-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmBowEMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFTdRAAt3vYPno1oyQ7sRQJM0JA8NfmXCw5 4CnuhNee0LfXOCFvDWi6t3CDb3LmqyuQOI2BT62LyvLlG9Cckfzmx2xRw6JjklsX H8vz036+3wroY2FtVVFRyFsZCqy3ws1NzkkGipsmcSUrBXiKHFV85hz1O4Gakxd4 5KJwk7voRBrJr6CLUz/ooyCvsFfWZKBAFE1BsG74FNecW1PPb30Kqx3JYf4qvKcK HzAAXuzsVQ5Iz+ooTMfv1Drsi3ekprLkFZKthUR85nsE1tMCn0scypw9J1iAV1sX wtinLnRTI1dLK2Ec0NFqgPxS4R/JCzs3VUVWzwo2XWro2aOsBH3hDx6WNJbS6arw LqWqWQPnXzDjYjCyWX83jHILVwZZfgme/d0E9JH+rNbZoDS0rMwKGvDxi4irq8dv 1BB325esZZ8EyxceROS7G70UQVc5hZSpkQBwAxOBlkAaS9SWLqg4KAzWNaoM4Nol JRiMWoa4XpQmKw+u8mvu6rk42YICgrbhWkCsTJBwfGPjc3tAkina9wU7ZlxSkOHV 8i+V/a1Vyis0YtSKLRUwNU5s2a33C8eXl800wsZYW2ip255JX9uRiVFUx/Aj5kXT ac8E64mkkSDeJrOpaLC3ML/grbcSX+IBZrVVBmnnR3eiH/zg5zEKfkFhDNPjKH5W gYuInWSk0roBNHM= =CWxi -----END PGP SIGNATURE----- Mon Jul 19 21:42:38 UTC 2021 I: Checking whether the package is not for us Mon Jul 19 21:42:38 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Mon Jul 19 21:42:38 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Mon Jul 19 22:01:03 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 19 09:42:55 -12 2021 I: pbuilder-time-stamp: 1626730975 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [scrappie_1.4.2-7.dsc] I: copying [./scrappie_1.4.2.orig.tar.gz] I: copying [./scrappie_1.4.2-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.rBOERQ5I/trustedkeys.kbx': General error gpgv: Signature made Sat Apr 3 07:21:39 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./scrappie_1.4.2-7.dsc dpkg-source: info: extracting scrappie in scrappie-1.4.2 dpkg-source: info: unpacking scrappie_1.4.2.orig.tar.gz dpkg-source: info: unpacking scrappie_1.4.2-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7601/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='d31603c63416405ab7d2d1747453c509' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7601' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/pbuilderrc_vxV8 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/b1 --logfile b1/build.log scrappie_1.4.2-7.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux I: ls -l /bin total 5796 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 17 21:27 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/7601/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcunit1-dev; however: Package libcunit1-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenblas-dev; however: Package libopenblas-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcunit1{a} libcunit1-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 44.3 MB of archives. After unpacking 197 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+b1 [372 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-2 [139 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4 [40.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 54 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libcunit1 i386 2.1-3-dfsg-2.3 [34.0 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libcunit1-dev i386 2.1-3-dfsg-2.3 [65.4 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4 [1156 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4 [148 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4 [114 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4 [93.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4 [58.3 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4 [38.1 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4 [2586 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libopenblas0-pthread i386 0.3.13+ds-3 [4761 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libopenblas0 i386 0.3.13+ds-3 [32.8 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libopenblas-pthread-dev i386 0.3.13+ds-3 [3162 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libopenblas-dev i386 0.3.13+ds-3 [44.1 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libsimde-dev all 0.7.2-4 [259 kB] Fetched 44.3 MB in 18s (2496 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../05-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../10-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../13-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Selecting previously unselected package libarchive13:i386. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_i386.deb ... Unpacking libarchive13:i386 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../28-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../30-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../31-libcurl4_7.74.0-1.3+b1_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../32-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../33-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../34-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../35-libuv1_1.40.0-2_i386.deb ... Unpacking libuv1:i386 (1.40.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../36-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../41-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../44-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../50-hdf5-helpers_1.10.6+repack-4_i386.deb ... Unpacking hdf5-helpers (1.10.6+repack-4) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../51-libaec0_1.0.4-1_i386.deb ... Unpacking libaec0:i386 (1.0.4-1) ... 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Selecting previously unselected package libhdf5-cpp-103-1:i386. Preparing to unpack .../58-libhdf5-cpp-103-1_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-cpp-103-1:i386 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-fortran-102:i386. Preparing to unpack .../59-libhdf5-fortran-102_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-fortran-102:i386 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-100:i386. Preparing to unpack .../60-libhdf5-hl-100_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-hl-100:i386 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-fortran-100:i386. Preparing to unpack .../61-libhdf5-hl-fortran-100_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-hl-fortran-100:i386 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-cpp-100:i386. Preparing to unpack .../62-libhdf5-hl-cpp-100_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-hl-cpp-100:i386 (1.10.6+repack-4) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../63-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../64-libjpeg62-turbo_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.0.6-4) ... Selecting previously unselected package libjpeg62-turbo-dev:i386. Preparing to unpack .../65-libjpeg62-turbo-dev_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg62-turbo-dev:i386 (1:2.0.6-4) ... Selecting previously unselected package libjpeg-dev:i386. Preparing to unpack .../66-libjpeg-dev_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg-dev:i386 (1:2.0.6-4) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../67-libhdf5-dev_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-dev (1.10.6+repack-4) ... Selecting previously unselected package libopenblas0-pthread:i386. Preparing to unpack .../68-libopenblas0-pthread_0.3.13+ds-3_i386.deb ... Unpacking libopenblas0-pthread:i386 (0.3.13+ds-3) ... Selecting previously unselected package libopenblas0:i386. Preparing to unpack .../69-libopenblas0_0.3.13+ds-3_i386.deb ... Unpacking libopenblas0:i386 (0.3.13+ds-3) ... Selecting previously unselected package libopenblas-pthread-dev:i386. Preparing to unpack .../70-libopenblas-pthread-dev_0.3.13+ds-3_i386.deb ... Unpacking libopenblas-pthread-dev:i386 (0.3.13+ds-3) ... Selecting previously unselected package libopenblas-dev:i386. Preparing to unpack .../71-libopenblas-dev_0.3.13+ds-3_i386.deb ... Unpacking libopenblas-dev:i386 (0.3.13+ds-3) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../72-libsimde-dev_0.7.2-4_all.deb ... Unpacking libsimde-dev (0.7.2-4) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up libsimde-dev (0.7.2-4) ... Setting up libpsl5:i386 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-4) ... Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libaec0:i386 (1.0.4-1) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:i386 (1.40.0-2) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... Setting up libjpeg62-turbo-dev:i386 (1:2.0.6-4) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.2+20201114-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up libjsoncpp24:i386 (1.9.4-4) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:i386 (1.4.1-2) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libcunit1:i386 (2.1-3-dfsg-2.3) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libsz2:i386 (1.0.4-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libopenblas0-pthread:i386 (0.3.13+ds-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-15) ... Setting up libarchive13:i386 (3.4.3-2+b1) ... Setting up libaec-dev:i386 (1.0.4-1) ... Setting up libjpeg-dev:i386 (1:2.0.6-4) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libcunit1-dev (2.1-3-dfsg-2.3) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:i386 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up libopenblas0:i386 (0.3.13+ds-3) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libhdf5-cpp-103-1:i386 (1.10.6+repack-4) ... Setting up libcurl4:i386 (7.74.0-1.3+b1) ... Setting up libhdf5-hl-100:i386 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libopenblas-pthread-dev:i386 (0.3.13+ds-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libopenblas-dev:i386 (0.3.13+ds-3) ... Setting up libhdf5-hl-cpp-100:i386 (1.10.6+repack-4) ... Setting up libhdf5-fortran-102:i386 (1.10.6+repack-4) ... Setting up cmake (3.18.4-2) ... Setting up libhdf5-hl-fortran-100:i386 (1.10.6+repack-4) ... Setting up debhelper (13.3.4) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/scrappie-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/scrappie-1.4.2' dh_auto_clean install -d /build/scrappie-1.4.2/debian/.debhelper/generated/_source/home rm -Rf build_* make[1]: Leaving directory '/build/scrappie-1.4.2' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/scrappie.substvars debian/files rm -fr -- debian/scrappie/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/scrappie-1.4.2' for SIMD in ssse3 sse3 sse2 ; do \ export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} ; \ done install -d /build/scrappie-1.4.2/debian/.debhelper/generated/_source/home install -d build_ssse3 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-ssse3 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_ssse3 install -d build_sse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse3 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_sse3 install -d build_sse2 cd build_sse2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-sse2 .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_sse2 export CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain install -d build_plain cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DEXE_SUFFIX=-plain .. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-1.4.2/build_plain make[1]: Leaving directory '/build/scrappie-1.4.2' rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/scrappie-1.4.2' mkdir -p /build/scrappie-1.4.2/debian/scrappie/usr/bin for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done cd build_ssse3 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_ssse3/CMakeFiles /build/scrappie-1.4.2/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/test_interface.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_objects.dir/depend.internal". Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 28%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' cd /build/scrappie-1.4.2/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3 /build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_ssse3/CMakeFiles/scrappie_static.dir/depend.internal". 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Scanning dependencies of target scrappie_unittest make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Scanning dependencies of target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o [ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o [ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o [ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 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-I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c [ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c [ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c [ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-1.4.2/src/scrappie_help.c [ 92%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-1.4.2/src/fast5_interface.c /build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); | ~~^ ~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' make[4]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' [100%] Built target scrappie_unittest [100%] Built target scrappie make[3]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' cd build_sse3 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_sse3/CMakeFiles /build/scrappie-1.4.2/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 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Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-1.4.2/src/util.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-1.4.2/src/networks.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/scrappie_matrix.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-1.4.2/src/decode.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-1.4.2/src/layers.c [ 28%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_static.dir/depend.internal". 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Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse3' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_sse3' cd /build/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3 /build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/depend.internal". 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/usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c [ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: 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/build/scrappie-1.4.2/src/fast5_interface.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c /build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); | ~~^ ~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 97%] Linking C executable 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o 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Scanning dependencies of target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-1.4.2/src/test_interface.c Scanning dependencies of target scrappie_objects make[4]: Leaving directory '/build/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_sse2' [ 7%] Building C object 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-I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-1.4.2/src/test/scrappie_test_runner.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 50%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o [ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o [ 52%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. 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-fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c [ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o [ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security 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-o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c [ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-1.4.2/src/scrappie_help.c [ 92%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-1.4.2/src/fast5_interface.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c /build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); | ~~^ ~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o 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CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-1.4.2/src/event_detection.c [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-1.4.2/src/scrappie_seq_helpers.c 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-I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-1.4.2/src/scrappie_common.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-1.4.2/src/nnfeatures.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 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CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_static.dir/depend.internal". 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Scanning dependencies of target scrappie_static make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-1.4.2/build_plain' cd /build/scrappie-1.4.2/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-1.4.2 /build/scrappie-1.4.2 /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain /build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= Dependee "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/DependInfo.cmake" is newer than depender "/build/scrappie-1.4.2/build_plain/CMakeFiles/scrappie.dir/depend.internal". 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_convolution.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-1.4.2/src/test/test_map_to_sequence.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_util.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-1.4.2/src/test/test_skeleton.c [ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_decoding.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_elu.c /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-1.4.2/src/scrappie.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_signal.c [ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-1.4.2/src/scrappie_raw.c [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/test/test_scrappie_squiggle.c [ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-1.4.2/src/test -I/build/scrappie-1.4.2/src -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /build/scrappie-1.4.2/src/test/test_util.c [ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-1.4.2/src/scrappie_events.c [ 78%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-1.4.2/src/scrappie_mappy.c [ 81%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-1.4.2/src/scrappie_seqmappy.c [ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-1.4.2/src/scrappie_squiggle.c [ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-1.4.2/src/scrappie_subcommands.c [ 89%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-1.4.2/src/scrappie_help.c [ 92%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-1.4.2/src/fast5_interface.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-1.4.2/src/scrappie_event_table.c /build/scrappie-1.4.2/src/scrappie_event_table.c: In function 'main_event_table': /build/scrappie-1.4.2/src/scrappie_event_table.c:155:42: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length); | ~~^ ~~~~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie make[4]: Leaving directory '/build/scrappie-1.4.2/build_plain' [100%] Built target scrappie_unittest make[3]: Leaving directory '/build/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' make[1]: Leaving directory '/build/scrappie-1.4.2' rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/scrappie-1.4.2' for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_test --builddirectory build_${SIMD} ; \ done cd build_ssse3 && make -j10 test ARGS\+=-j10 make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/scrappie-1.4.2/build_ssse3 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy 1/19 Test #8: test_event_table ................. Passed 0.72 sec Start 11: test_squiggle_r94 2/19 Test #11: test_squiggle_r94 ................ Passed 0.78 sec Start 12: test_squiggle_r10 3/19 Test #12: test_squiggle_r10 ................ Passed 0.65 sec Start 13: test_licence 4/19 Test #13: test_licence ..................... Passed 0.09 sec Start 14: test_help 5/19 Test #14: test_help ........................ Passed 0.08 sec Start 15: test_help_events 6/19 Test #15: test_help_events ................. Passed 0.07 sec Start 16: test_help_event_table 7/19 Test #16: test_help_event_table ............ Passed 0.08 sec Start 17: test_help_raw 8/19 Test #17: test_help_raw .................... Passed 0.10 sec Start 18: test_help_squiggle 9/19 Test #9: test_mappy ....................... Passed 3.90 sec Start 19: test_version 10/19 Test #18: test_help_squiggle ............... Passed 1.69 sec 11/19 Test #19: test_version ..................... Passed 0.07 sec 12/19 Test #10: test_seqmappy .................... Passed 27.36 sec 13/19 Test #2: test_events_call ................. Passed 37.35 sec 14/19 Test #3: test_raw_call .................... Passed 41.70 sec 15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 45.45 sec 16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 48.13 sec 17/19 Test #1: unittest ......................... Passed 52.10 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 56.86 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 83.27 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 83.30 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' rm -fr -- /tmp/dh-xdg-rundir-xrIptZMN cd build_sse3 && make -j10 test ARGS\+=-j10 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/scrappie-1.4.2/build_sse3 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy 1/19 Test #8: test_event_table ................. Passed 0.81 sec Start 11: test_squiggle_r94 2/19 Test #11: test_squiggle_r94 ................ Passed 1.03 sec Start 12: test_squiggle_r10 3/19 Test #12: test_squiggle_r10 ................ Passed 0.83 sec Start 13: test_licence 4/19 Test #13: test_licence ..................... Passed 0.11 sec Start 14: test_help 5/19 Test #9: test_mappy ....................... Passed 4.12 sec Start 15: test_help_events 6/19 Test #14: test_help ........................ Passed 0.95 sec Start 16: test_help_event_table 7/19 Test #15: test_help_events ................. Passed 0.09 sec Start 17: test_help_raw 8/19 Test #16: test_help_event_table ............ Passed 0.10 sec Start 18: test_help_squiggle 9/19 Test #17: test_help_raw .................... Passed 0.09 sec Start 19: test_version 10/19 Test #18: test_help_squiggle ............... Passed 0.09 sec 11/19 Test #19: test_version ..................... Passed 0.10 sec 12/19 Test #10: test_seqmappy .................... Passed 26.25 sec 13/19 Test #2: test_events_call ................. Passed 38.94 sec 14/19 Test #3: test_raw_call .................... Passed 42.65 sec 15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 43.40 sec 16/19 Test #4: test_rawrgrgr_r94_call ........... Passed 44.18 sec 17/19 Test #1: unittest ......................... Passed 51.29 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 54.70 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 79.24 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 79.31 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' rm -fr -- /tmp/dh-xdg-rundir-4rhcHFFW cd build_sse2 && make -j10 test ARGS\+=-j10 make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/scrappie-1.4.2/build_sse2 Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy 1/19 Test #8: test_event_table ................. Passed 0.92 sec Start 11: test_squiggle_r94 2/19 Test #11: test_squiggle_r94 ................ Passed 0.75 sec Start 12: test_squiggle_r10 3/19 Test #12: test_squiggle_r10 ................ Passed 0.74 sec Start 13: test_licence 4/19 Test #13: test_licence ..................... Passed 0.09 sec Start 14: test_help 5/19 Test #14: test_help ........................ Passed 0.09 sec Start 15: test_help_events 6/19 Test #15: test_help_events ................. Passed 0.09 sec Start 16: test_help_event_table 7/19 Test #16: test_help_event_table ............ Passed 0.09 sec Start 17: test_help_raw 8/19 Test #9: test_mappy ....................... Passed 4.67 sec Start 18: test_help_squiggle 9/19 Test #17: test_help_raw .................... Passed 2.51 sec Start 19: test_version 10/19 Test #18: test_help_squiggle ............... Passed 0.09 sec 11/19 Test #19: test_version ..................... Passed 0.06 sec 12/19 Test #10: test_seqmappy .................... Passed 25.78 sec 13/19 Test #2: test_events_call ................. Passed 36.66 sec 14/19 Test #3: test_raw_call .................... Passed 38.25 sec 15/19 Test #4: test_rawrgrgr_r94_call ........... Passed 47.03 sec 16/19 Test #5: test_rawrgrgr_r941_call .......... Passed 47.10 sec 17/19 Test #1: unittest ......................... Passed 51.57 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 55.73 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 79.91 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 79.93 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' rm -fr -- /tmp/dh-xdg-rundir-p_VLEaNp dh_auto_test --builddirectory build_plain cd build_plain && make -j10 test ARGS\+=-j10 make[2]: Entering directory '/build/scrappie-1.4.2/build_plain' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/scrappie-1.4.2/build_plain Start 1: unittest Start 2: test_events_call Start 3: test_raw_call Start 4: test_rawrgrgr_r94_call Start 5: test_rawrgrgr_r941_call Start 6: test_rawrgrgr_r10_call Start 7: test_rawrnnrf_r94_call Start 8: test_event_table Start 9: test_mappy Start 10: test_seqmappy 1/19 Test #8: test_event_table ................. Passed 0.81 sec Start 11: test_squiggle_r94 2/19 Test #11: test_squiggle_r94 ................ Passed 1.03 sec Start 12: test_squiggle_r10 3/19 Test #9: test_mappy ....................... Passed 3.23 sec Start 13: test_licence 4/19 Test #12: test_squiggle_r10 ................ Passed 2.58 sec Start 14: test_help 5/19 Test #13: test_licence ..................... Passed 0.18 sec Start 15: test_help_events 6/19 Test #14: test_help ........................ Passed 0.09 sec Start 16: test_help_event_table 7/19 Test #15: test_help_events ................. Passed 0.09 sec Start 17: test_help_raw 8/19 Test #16: test_help_event_table ............ Passed 0.07 sec Start 18: test_help_squiggle 9/19 Test #17: test_help_raw .................... Passed 0.09 sec Start 19: test_version 10/19 Test #18: test_help_squiggle ............... Passed 0.07 sec 11/19 Test #19: test_version ..................... Passed 0.07 sec 12/19 Test #10: test_seqmappy .................... Passed 62.79 sec 13/19 Test #1: unittest ......................... Passed 65.77 sec 14/19 Test #3: test_raw_call .................... Passed 122.43 sec 15/19 Test #5: test_rawrgrgr_r941_call .......... Passed 136.13 sec 16/19 Test #2: test_events_call ................. Passed 142.79 sec 17/19 Test #4: test_rawrgrgr_r94_call ........... Passed 147.31 sec 18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 180.06 sec 19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 255.34 sec 100% tests passed, 0 tests failed out of 19 Total Test time (real) = 255.46 sec make[2]: Leaving directory '/build/scrappie-1.4.2/build_plain' rm -fr -- /tmp/dh-xdg-rundir-L42RrSsw make[1]: Leaving directory '/build/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake rm -f -- debian/scrappie.substvars rm -fr -- debian/.debhelper/generated/scrappie/ debian/scrappie/ debian/tmp/ rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/scrappie-1.4.2' dh_install debian/bin/simd-dispatch /usr/lib// install -d debian/scrappie//usr/lib// cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib/// install -d debian/.debhelper/generated/scrappie for SIMD in ssse3 sse3 sse2 ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_ssse3 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_ssse3' cd build_sse3 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse3' cd build_sse2 && make -j10 install DESTDIR=/build/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-1.4.2 -B/build/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-1.4.2/build_sse2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-1.4.2/build_sse2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-1.4.2/build_sse2' dh_install debian/bin/simd-dispatch /usr/lib/ cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib// dh_install build_*/scrappie-* /usr/bin// cp --reflink=auto -a ./build_plain/scrappie-plain ./build_sse2/scrappie-sse2 ./build_sse3/scrappie-sse3 ./build_ssse3/scrappie-ssse3 debian/scrappie//usr/bin/// cd /build/scrappie-1.4.2/debian/scrappie/usr/bin && \ rm -rf scrappie && ln -s ../lib//simd-dispatch scrappie make[1]: Leaving directory '/build/scrappie-1.4.2' dh_installdocs -O--buildsystem=cmake install -d debian/scrappie/usr/share/doc/scrappie install -p -m0644 debian/copyright debian/scrappie/usr/share/doc/scrappie/copyright dh_installchangelogs -O--buildsystem=cmake install -p -m0644 debian/changelog debian/scrappie/usr/share/doc/scrappie/changelog.Debian dh_installman -O--buildsystem=cmake install -d debian/scrappie/usr/share/man/man1/ install -p -m0644 ./debian/scrappie.1 debian/scrappie/usr/share/man/man1/scrappie.1 man-recode --to-code UTF-8 --suffix .dh-new debian/scrappie/usr/share/man/man1/scrappie.1 mv debian/scrappie/usr/share/man/man1/scrappie.1.dh-new debian/scrappie/usr/share/man/man1/scrappie.1 chmod 0644 -- debian/scrappie/usr/share/man/man1/scrappie.1 dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake install -d debian/scrappie/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/scrappie/usr/share/lintian/overrides/scrappie dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake rm -f debian/scrappie/usr/bin/scrappie ln -s ../lib/simd-dispatch debian/scrappie/usr/bin/scrappie dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake cd debian/scrappie chmod a-x usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1 gzip -9nf usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1 cd '/build/scrappie-1.4.2' dh_fixperms -O--buildsystem=cmake find debian/scrappie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/scrappie/usr/share/doc -type f -a -true -a ! -regex 'debian/scrappie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/scrappie/usr/share/man debian/scrappie/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/scrappie/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -d debian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug -- debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-ssse3 objcopy --compress-debug-sections debian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu/scrappie.debug dh_strip -a -O--buildsystem=cmake install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/35/d19f7734bc0b7a093584a1fc2cc930b9ebf586.debug debian/scrappie/usr/bin/scrappie-sse2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24/4906bfe2eeb77fbff1b7ff9f6b9131bd3673fc.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24/4906bfe2eeb77fbff1b7ff9f6b9131bd3673fc.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/24/4906bfe2eeb77fbff1b7ff9f6b9131bd3673fc.debug debian/scrappie/usr/bin/scrappie-plain install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e/68d3234a6c37047d7ff631283cbe7729071875.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e/68d3234a6c37047d7ff631283cbe7729071875.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/2e/68d3234a6c37047d7ff631283cbe7729071875.debug debian/scrappie/usr/bin/scrappie-sse3 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61/c270a5af82cfdd8867038855d1cf31a91757b4.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61/c270a5af82cfdd8867038855d1cf31a91757b4.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/61/c270a5af82cfdd8867038855d1cf31a91757b4.debug debian/scrappie/usr/bin/scrappie-ssse3 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/scrappie/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/scrappie/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/scrappie/usr/lib/debug install -d debian/.debhelper/scrappie/dbgsym-root/usr/share/doc ln -s scrappie debian/.debhelper/scrappie/dbgsym-root/usr/share/doc/scrappie-dbgsym dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -d debian/scrappie/DEBIAN dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-ssse3 dh_installdeb -O--buildsystem=cmake rm -f debian/scrappie.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/scrappie-1.4.2' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " echo misc:Depends= >> debian/scrappie.substvars echo misc:Pre-Depends= >> debian/scrappie.substvars install -d debian/.debhelper/scrappie/dbgsym-root/DEBIAN dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/.debhelper/scrappie/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.2-4), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=scrappie-dbgsym "-DDepends=scrappie (= \${binary:Version})" "-DDescription=debug symbols for scrappie" "-DBuild-Ids=244906bfe2eeb77fbff1b7ff9f6b9131bd3673fc 2e68d3234a6c37047d7ff631283cbe7729071875 35d19f7734bc0b7a093584a1fc2cc930b9ebf586 61c270a5af82cfdd8867038855d1cf31a91757b4" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/control dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/scrappie "-Vsimde:Built-Using=simde (= 0.7.2-4), " chmod 0644 -- debian/scrappie/DEBIAN/control make[1]: Leaving directory '/build/scrappie-1.4.2' dh_md5sums -O--buildsystem=cmake cd debian/scrappie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/scrappie/DEBIAN/md5sums cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/scrappie .. dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-7_i386.deb'. dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-7_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../scrappie_1.4.2-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7601 and its subdirectories I: Current time: Mon Jul 19 10:01:01 -12 2021 I: pbuilder-time-stamp: 1626732061 Mon Jul 19 22:01:03 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Mon Jul 19 22:01:03 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Mon Jul 19 22:16:48 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Mon Jul 19 22:16:49 UTC 2021 I: scrappie_1.4.2-7_i386.changes: Format: 1.8 Date: Sun, 04 Apr 2021 00:40:23 +0530 Source: scrappie Binary: scrappie scrappie-dbgsym Architecture: i386 Version: 1.4.2-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: scrappie - basecaller for Nanopore sequencer Changes: scrappie (1.4.2-7) unstable; urgency=medium . * Skip one assertion test on ppc64el Checksums-Sha1: 7d6c9b78b7ec8c990e88e951f3c1188c4f2f7618 529788 scrappie-dbgsym_1.4.2-7_i386.deb 3e62938a935aeb72e4a4f2cc193957b84b9c1ca8 6376 scrappie_1.4.2-7_i386.buildinfo dfb2be8dc313237173dcbd3008ef9dfa6ca7bf7c 45890224 scrappie_1.4.2-7_i386.deb Checksums-Sha256: 692afb7df508fbf33a1eb255328bd3a98eccca9a8ed0dc36af920e7b709fe641 529788 scrappie-dbgsym_1.4.2-7_i386.deb 85e6304afbcc16ff0ac7defca7e475ce27cee67fed17e8fd6379691bac1cb304 6376 scrappie_1.4.2-7_i386.buildinfo f152d2375c0c385d1684e812cf4a1066dbfb74cae87475a264af3e0c7a98efeb 45890224 scrappie_1.4.2-7_i386.deb Files: d2ef26582796aa723c8d3b290fcd7276 529788 debug optional scrappie-dbgsym_1.4.2-7_i386.deb 2f032c41f9fe7fd9772b6f4cb3723071 6376 science optional scrappie_1.4.2-7_i386.buildinfo 3eceb32fe74fb355bb9ba7949d22913c 45890224 science optional scrappie_1.4.2-7_i386.deb Mon Jul 19 22:16:52 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/scrappie_1.4.2-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/scrappie_1.4.2-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/scrappie_1.4.2-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/b1/scrappie_1.4.2-7_i386.changes /srv/reproducible-results/rbuild-debian/tmp.gKW3kUdjIV/b2/scrappie_1.4.2-7_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 8.230s) 8.230s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 7.994s) 7.994s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 19 22:22:46 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 19 22:22:46 UTC 2021 I: scrappie from bullseye built successfully and reproducibly on i386. Mon Jul 19 22:22:48 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 19 22:22:48 UTC 2021 I: Submitting 8.0K b1/scrappie_1.4.2-7_i386.buildinfo.asc Mon Jul 19 22:22:50 UTC 2021 I: Submitting 8.0K b2/scrappie_1.4.2-7_i386.buildinfo.asc Mon Jul 19 22:22:51 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 19 22:22:51 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 19 22:22:51 UTC 2021 I: Removing signed scrappie_1.4.2-7_i386.buildinfo.asc files: removed './b1/scrappie_1.4.2-7_i386.buildinfo.asc' removed './b2/scrappie_1.4.2-7_i386.buildinfo.asc'