Tue Jan 9 13:56:48 UTC 2024 I: starting to build spaln/bullseye/i386 on jenkins on '2024-01-09 13:56' Tue Jan 9 13:56:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/6533/console.log Tue Jan 9 13:56:48 UTC 2024 I: Downloading source for bullseye/spaln=2.4.1+dfsg-3 --2024-01-09 13:56:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/spaln/spaln_2.4.1%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2037 (2.0K) [text/prs.lines.tag] Saving to: ‘spaln_2.4.1+dfsg-3.dsc’ 0K . 100% 3.58M=0.001s 2024-01-09 13:56:48 (3.58 MB/s) - ‘spaln_2.4.1+dfsg-3.dsc’ saved [2037/2037] Tue Jan 9 13:56:48 UTC 2024 I: spaln_2.4.1+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: spaln Binary: spaln, spaln-data Architecture: any all Version: 2.4.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/spaln Vcs-Git: https://salsa.debian.org/med-team/spaln.git Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: spaln deb science optional arch=any spaln-data deb science optional arch=all Checksums-Sha1: f58464a240ccd32adbc63aea9f87423fa4f42f74 19684856 spaln_2.4.1+dfsg.orig.tar.xz 93a46eb1d3ce903c78696e0e7b9ebc92d325595d 4112 spaln_2.4.1+dfsg-3.debian.tar.xz Checksums-Sha256: 06623ccee3583a4b91cba3cb814cbeba67dad962efe1e420fd4e1f3860bd89ff 19684856 spaln_2.4.1+dfsg.orig.tar.xz 49537833db0600a8a9f1c5ce6dfaad84cd562b6d29f33f0ad59ca2b5edf20565 4112 spaln_2.4.1+dfsg-3.debian.tar.xz Files: b7c79a3f758b08c91a2ed45115a823fc 19684856 spaln_2.4.1+dfsg.orig.tar.xz 9f2151f0800dc4403b4a699be70c52c8 4112 spaln_2.4.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/0mHoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHXoA/5Af1VPeRwnfRNfhr5WbXl9WN3v57nTGK+ 5IXbWxyQqlcpsuKGPD0KaQiq/Rmw4QfK8dCXpg5fREXPKQxi5Y8N4Z8KeoEzQXNq 3lceqArytGPYEAV3Qrp2dE/Nz4XViRceEiS2/MEyHEm8pXOBMwshD0k8+waKvVLl /q6BzYgA5tlygef1WvyTcnCKJNT0VC/+pfgXzLI7FiYIotItjr0ex9NTbo7oSThC gYwyEpwVE51ggJCg1j1hX6aljG+KANMCyNmnn2wTcLACHaivodD5rSVLVQsjFZ5b NAJ2nzYOjHQD8raydzH+irDr+/9XeTXqbrIt0SkIVwoTodsuVVjLKDW2oGXHsTpD QkuSo9vaQnMlLawClk+PqrDBPnkG3fYymbg9wHEOWy0IAdgezo2B9CjzWK0uOFfv R81JMgrw8SGyW8iSRcUZIFyUuAnwDsFO47ky2yH8peAGUmR6f9xNuK4G+oWtyIVS 7sv7IaIA5ruFRHLIYimOsknmH0JMh8xk699cKwoW8oosz1MOEkSnDwUmSzMvz4ow cVh1cWULo+Ej7+4qDzgEsaiTm6a84qt31u7K9HdJXUEA1XDlICrVJwt8FlV5SfYK rDOl0H1GDN5LqynXQkowCPejFn71/lctyIIes+CFdbSNp2wWLTAVHgS11dslm6Ot Kv/X1ZSyL/A= =Jj8q -----END PGP SIGNATURE----- Tue Jan 9 13:56:48 UTC 2024 I: Checking whether the package is not for us Tue Jan 9 13:56:48 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Tue Jan 9 13:56:48 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Tue Jan 9 13:58:30 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 10 08:19:47 -12 2025 I: pbuilder-time-stamp: 1739218787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [spaln_2.4.1+dfsg-3.dsc] I: copying [./spaln_2.4.1+dfsg.orig.tar.xz] I: copying [./spaln_2.4.1+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ndeBzzAE/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 5 16:48:58 2021 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spaln_2.4.1+dfsg-3.dsc dpkg-source: info: extracting spaln in spaln-2.4.1+dfsg dpkg-source: info: unpacking spaln_2.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking spaln_2.4.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying portability.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/81986/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0dfedb2670524e7ca25c824701d03663' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='81986' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/pbuilderrc_cimD --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/b1 --logfile b1/build.log spaln_2.4.1+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/81986/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB of archives. After unpacking 68.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] Fetched 18.8 MB in 1s (30.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3+deb11u1_i386.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3+deb11u1_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3+deb11u1_i386.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7+deb11u4_i386.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spaln-2.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spaln_2.4.1+dfsg-3_source.changes dpkg-buildpackage: info: source package spaln dpkg-buildpackage: info: source version 2.4.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg' [ -r src/Makefile ] && make -C src clean || true rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile make[1]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg' cd src && AR="i686-linux-gnu-ar rc" ./configure --exec_prefix=/usr/bin OK, CXX=i686-linux-gnu-g++ CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto 1 -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto binaries install to /usr/bin tables install to /usr/share/spaln/table alndbs install to /usr/share/spaln/seqdb wrote Makefile wrote files OK. try make and make install. good luck! make[1]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg' /usr/bin/make table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin -C src make[2]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg/src' i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from spaln.cc:25: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from spaln.cc:25: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from blksrc.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from blksrc.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ blksrc.cc: In function 'void idx2SeqLenStat(const char*, SeqLenStat&)': blksrc.cc:1003:19: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare] 1003 | if (sls.maxv < widx->seqlen) sls.maxv = widx->seqlen; | ~~~~~~~~~^~~~~~~~~~~~~~ blksrc.cc: In member function 'int SrchBlk::FindHsp(BPAIR*)': blksrc.cc:2528:24: warning: comparison of integer expressions of different signedness: 'int' and 'INT' {aka 'unsigned int'} [-Wsign-compare] 2528 | if (curgr - gener >= OutPrm.MaxOut - 1) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ blksrc.cc: In member function 'int SrchBlk::TestOutput(int)': blksrc.cc:2733:13: warning: format '%ld' expects argument of type 'long int', but argument 11 has type 'int' [-Wformat=] 2733 | printf(ofmt, query->sqname(), dir[d / 2], query->left, query->right, cid, p, q, | ^~~~ ...... 2736 | bh4->as[d][bh4->maxs[d]] - query->at(0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int blksrc.cc:2733:13: warning: format '%ld' expects argument of type 'long int', but argument 12 has type 'int' [-Wformat=] i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from aln2.cc:23: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from aln2.cc:23: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from dbs.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from dbs.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ dbs.cc: In member function 'Seq* Seq::getdbseq(DbsDt*, const char*, int, bool)': dbs.cc:821:9: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare] 821 | if (n > record->seqlen) n = record->seqlen; | ~~^~~~~~~~~~~~~~~~ dbs.cc:826:9: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare] 826 | if (n == record->seqlen) break; | ~~^~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gaps.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from gaps.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from codepot.cc:26: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from codepot.cc:26: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc In file included from stdtype.h:34, from cmn.h:25, from divseq.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from divseq.h:26, from divseq.cc:23: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from gsinfo.cc:23: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from gsinfo.cc:23: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2b1.cc:28: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2b1.cc:28: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from fwd2d1.cc:29: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from fwd2d1.cc:29: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2h1.cc:29: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2h1.cc:29: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from fwd2s1.cc:26: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from fwd2s1.cc:26: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from bitpat.cc:23: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from bitpat.cc:23: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from seq.cc:23: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from seq.cc:23: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ seq.cc: In member function 'Seq* Seq::aliaseq(Seq*, bool)': seq.cc:408:32: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class Seq' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 408 | memcpy(dest, this, sizeof(Seq)); | ^ In file included from seq.cc:23: seq.h:252:7: note: 'class Seq' declared here 252 | class Seq { | ^~~ seq.cc: In member function 'void Seq::seqalloc(int, int, bool)': seq.cc:477:26: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] 477 | } catch (std::bad_alloc ba) { | ^~ seq.cc: In member function 'CHAR* Seq::seq_realloc()': seq.cc:499:26: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] 499 | } catch (std::bad_alloc ba) { | ^~ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from simmtx.cc:25: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from simmtx.cc:25: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from divseq.h:26, from sqpr.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from divseq.h:26, from sqpr.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from utilseq.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from utilseq.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc In file included from stdtype.h:34, from cmn.h:25, from vmf.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from wln.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from wln.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from boyer_moore.h:4, from boyer_moore.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from boyer_moore.h:4, from boyer_moore.cc:22: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ i686-linux-gnu-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \ fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o \ seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o i686-linux-gnu-ranlib sblib.a i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc In file included from clib.cc:34: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc In file included from iolib.cc:33: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc In file included from stdtype.h:34, from mfile.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc In file included from stdtype.h:34, from sets.cc:22: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc In file included from stdtype.h:34, from supprime.cc:13: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ i686-linux-gnu-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o i686-linux-gnu-ranlib clib.a i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from aln.h:26, from sortgrcd.h:26, from sortgrcd.cc:26: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from aln.h:26, from sortgrcd.h:26, from sortgrcd.cc:26: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ sortgrcd.cc: In function 'int count_record(const char*, const char*, size_t)': sortgrcd.cc:994:11: warning: ISO C++ forbids variable length array 'buf' [-Wvla] 994 | char buf[rcdsize]; | ^~~ i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makmdm.cc:28: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from makmdm.cc:28: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ makmdm.cc: In function 'void exp_qdt(double (*)[20], double*, double, int)': makmdm.cc:396:15: warning: unused variable 'q' [-Wunused-variable] 396 | static double q[2][20][20] = { | ^ makmdm.cc: At global scope: makmdm.cc:396:15: warning: 'q' defined but not used [-Wunused-variable] i686-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto In file included from stdtype.h:34, from cmn.h:25, from seq.h:25, from makdbs.h:25, from makdbs.cc:24: clib.h:1076:51: warning: extra ';' [-Wpedantic] 1076 | inline double inverse(double x) {return (1. / x);}; | ^ In file included from seq.h:62, from makdbs.h:25, from makdbs.cc:24: codepot.h:171:2: warning: extra ';' [-Wpedantic] 171 | }; | ^ make[2]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/spaln.substvars debian/spaln-data.substvars rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/ debian/.debhelper/generated/spaln-data/ debian/spaln-data/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg' /usr/bin/make table_dir=/build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln//usr/bin -C src install make[2]: Entering directory '/build/reproducible-path/spaln-2.4.1+dfsg/src' test -d /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln//usr/bin || mkdir -p /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln//usr/bin cp spaln sortgrcd makmdm makdbs /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln//usr/bin test -d /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table || mkdir -p /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table ./makmdm /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table 7.6862 5.1057 4.2546 5.1269 2.0279 4.1061 6.1820 7.4714 2.2983 5.2569 9.1111 5.9498 2.3414 4.0530 5.0532 6.8225 5.8518 1.4336 3.2303 6.6374 Pam = 0 Norl fact = 106.899 trace = 106.899 Pam = 10 Norl fact = 13.996 trace = 41.995 Pam = 20 Norl fact = 15.588 trace = 45.299 Pam = 30 Norl fact = 16.894 trace = 47.531 Pam = 40 Norl fact = 18.094 trace = 49.266 Pam = 50 Norl fact = 19.249 trace = 50.701 Pam = 60 Norl fact = 20.386 trace = 51.928 Pam = 70 Norl fact = 21.522 trace = 52.997 Pam = 80 Norl fact = 22.667 trace = 53.943 Pam = 90 Norl fact = 23.828 trace = 54.788 Pam = 100 Norl fact = 25.012 trace = 55.547 Pam = 110 Norl fact = 26.222 trace = 56.234 Pam = 120 Norl fact = 27.462 trace = 56.858 Pam = 130 Norl fact = 28.735 trace = 57.427 Pam = 140 Norl fact = 30.044 trace = 57.946 Pam = 150 Norl fact = 31.391 trace = 58.421 Pam = 160 Norl fact = 32.778 trace = 58.858 Pam = 170 Norl fact = 34.208 trace = 59.259 Pam = 180 Norl fact = 35.683 trace = 59.629 Pam = 190 Norl fact = 37.204 trace = 59.970 Pam = 200 Norl fact = 38.774 trace = 60.286 Pam = 210 Norl fact = 40.394 trace = 60.580 Pam = 220 Norl fact = 42.066 trace = 60.854 Pam = 230 Norl fact = 43.793 trace = 61.110 Pam = 240 Norl fact = 45.577 trace = 61.350 Pam = 250 Norl fact = 47.419 trace = 61.576 Pam = 260 Norl fact = 49.322 trace = 61.791 Pam = 270 Norl fact = 51.287 trace = 61.996 Pam = 280 Norl fact = 53.318 trace = 62.191 Pam = 290 Norl fact = 55.415 trace = 62.380 Pam = 300 Norl fact = 57.582 trace = 62.563 test -d /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb || mkdir -p /build/reproducible-path/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb make[2]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/spaln-2.4.1+dfsg' dh_install install -d debian/.debhelper/generated/spaln install -d debian/.debhelper/generated/spaln-data dh_installdocs install -d debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./debian/README.Debian debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./doc/readme.html debian/spaln/usr/share/doc/spaln cp --reflink=auto -a ./README.md debian/spaln/usr/share/doc/spaln chmod -R u\+rw,go=rX debian/spaln/usr/share/doc install -p -m0644 debian/README.Debian debian/spaln/usr/share/doc/spaln/README.Debian install -p -m0644 debian/copyright debian/spaln/usr/share/doc/spaln/copyright install -d debian/spaln-data/usr/share/doc/spaln-data install -p -m0644 debian/copyright debian/spaln-data/usr/share/doc/spaln-data/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/spaln/usr/share/doc/spaln/changelog.Debian install -p -m0644 debian/changelog debian/spaln-data/usr/share/doc/spaln-data/changelog.Debian dh_installman install -d debian/spaln/usr/share/man/man1/ install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1 install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1 man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/spaln.1 mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1 chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1 mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1 chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1 dh_perl (grep -a -s -v perl:Depends debian/spaln-data.substvars; echo perl:Depends=perl:any) > debian/spaln-data.substvars.new mv debian/spaln-data.substvars.new debian/spaln-data.substvars dh_link dh_strip_nondeterminism Using 1608813897 as canonical time Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.faa.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc.cf.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/spaln-data/usr/share/spaln/seqdb/dictdisc_g.gf.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/spaln cd debian/spaln-data chmod a-x usr/share/doc/spaln-data/changelog.Debian chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 gzip -9nf usr/share/doc/spaln-data/changelog.Debian gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1 cd '/build/reproducible-path/spaln-2.4.1+dfsg' cd '/build/reproducible-path/spaln-2.4.1+dfsg' dh_fixperms find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln-data/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/spaln-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/spaln-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a install -d debian/spaln/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/spaln/usr/lib/debug/.dwz/i386-linux-gnu/spaln.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/spaln.debug -- debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/i386-linux-gnu/spaln.debug dh_strip -a install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/52/ae362527e884672cc624dcf2aa1d5936d949ae.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/52/ae362527e884672cc624dcf2aa1d5936d949ae.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/52/ae362527e884672cc624dcf2aa1d5936d949ae.debug debian/spaln/usr/bin/spaln install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/89/94da5696d289cb158b1c5d5c0e3f6f5cc74914.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/89/94da5696d289cb158b1c5d5c0e3f6f5cc74914.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/89/94da5696d289cb158b1c5d5c0e3f6f5cc74914.debug debian/spaln/usr/bin/sortgrcd install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/92/b8ab0eda058ceef14dbffb64e427aba7a4f2f6.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/92/b8ab0eda058ceef14dbffb64e427aba7a4f2f6.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/92/b8ab0eda058ceef14dbffb64e427aba7a4f2f6.debug debian/spaln/usr/bin/makdbs install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/75/f115026cff69c3b7a7f9759a6a2fd61087250b.debug chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/75/f115026cff69c3b7a7f9759a6a2fd61087250b.debug strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/75/f115026cff69c3b7a7f9759a6a2fd61087250b.debug debian/spaln/usr/bin/makmdm install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/spaln/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/spaln/usr/lib/debug install -d debian/.debhelper/spaln/dbgsym-root/usr/share/doc ln -s spaln debian/.debhelper/spaln/dbgsym-root/usr/share/doc/spaln-dbgsym dh_makeshlibs -a rm -f debian/spaln/DEBIAN/shlibs dh_shlibdeps -a install -d debian/spaln/DEBIAN dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/spaln debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm dh_installdeb install -d debian/spaln-data/DEBIAN dh_gencontrol echo misc:Depends= >> debian/spaln-data.substvars echo misc:Pre-Depends= >> debian/spaln-data.substvars dpkg-gencontrol -pspaln-data -ldebian/changelog -Tdebian/spaln-data.substvars -Pdebian/spaln-data echo misc:Depends= >> debian/spaln.substvars echo misc:Pre-Depends= >> debian/spaln.substvars install -d debian/.debhelper/spaln/dbgsym-root/DEBIAN dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=spaln-dbgsym "-DDepends=spaln (= \${binary:Version})" "-DDescription=debug symbols for spaln" "-DBuild-Ids=52ae362527e884672cc624dcf2aa1d5936d949ae 75f115026cff69c3b7a7f9759a6a2fd61087250b 8994da5696d289cb158b1c5d5c0e3f6f5cc74914 92b8ab0eda058ceef14dbffb64e427aba7a4f2f6" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package spaln-data: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/spaln-data/DEBIAN/control chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/control dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/spaln chmod 0644 -- debian/spaln/DEBIAN/control dh_md5sums cd debian/spaln >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/spaln-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/spaln/DEBIAN/md5sums cd debian/.debhelper/spaln/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/spaln-data/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/spaln .. dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root .. dpkg-deb --root-owner-group --build debian/spaln-data .. dpkg-deb: building package 'spaln' in '../spaln_2.4.1+dfsg-3_i386.deb'. dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_2.4.1+dfsg-3_i386.deb'. dpkg-deb: building package 'spaln-data' in '../spaln-data_2.4.1+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../spaln_2.4.1+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/81986 and its subdirectories I: Current time: Mon Feb 10 08:21:26 -12 2025 I: pbuilder-time-stamp: 1739218886 Tue Jan 9 13:58:30 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Jan 9 13:58:30 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Jan 9 14:01:14 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Jan 9 14:01:14 UTC 2024 I: spaln_2.4.1+dfsg-3_i386.changes: Format: 1.8 Date: Thu, 24 Dec 2020 13:44:57 +0100 Source: spaln Binary: spaln spaln-data spaln-dbgsym Architecture: all i386 Version: 2.4.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: spaln - splicing-aware transcript-alignment to genomic DNA spaln-data - splicing-aware transcript-alignment to genomic DNA (data) Closes: 978059 Changes: spaln (2.4.1+dfsg-3) unstable; urgency=medium . * Team upload. * Improve cross building: Supply cross tools. (Closes: #978059) Checksums-Sha1: eb6b44318ed9543982912d68ff40ef00cc2db060 19481460 spaln-data_2.4.1+dfsg-3_all.deb fb86c9452aaec4eced5ed8771de045780d23f63f 1079032 spaln-dbgsym_2.4.1+dfsg-3_i386.deb e0e744fdb7720e4a8f70c83f35f67579b76e89c6 5582 spaln_2.4.1+dfsg-3_i386.buildinfo 78a988ed32323478ad6fa1330e19761ae2a48da8 357848 spaln_2.4.1+dfsg-3_i386.deb Checksums-Sha256: 1ec4c6b235c629e5692a4f72b022e955c4a8552b1770ccc019879d84be65f58f 19481460 spaln-data_2.4.1+dfsg-3_all.deb cc0b3ae5caf3c4f291b92c77248af651f7253f28331fedb402c46789cc160fef 1079032 spaln-dbgsym_2.4.1+dfsg-3_i386.deb a2ea46817828c09235decef5929d61d2b835b01aba056e3fd5458580c120c337 5582 spaln_2.4.1+dfsg-3_i386.buildinfo 3e04fac4762f5a2233d0284473c40356035eeb6864b9c279dcbf6cd59d19ef74 357848 spaln_2.4.1+dfsg-3_i386.deb Files: c2049a6e4886082e7db4a7095e0a6e75 19481460 science optional spaln-data_2.4.1+dfsg-3_all.deb 706210b6c79e8de37e8cde232109bb27 1079032 debug optional spaln-dbgsym_2.4.1+dfsg-3_i386.deb 268f2d99181d26e40b66aaf61f112dd8 5582 science optional spaln_2.4.1+dfsg-3_i386.buildinfo f38cdc94b3da3bddfc1d0f7c5e656b52 357848 science optional spaln_2.4.1+dfsg-3_i386.deb Tue Jan 9 14:01:21 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/spaln_2.4.1+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/spaln_2.4.1+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/spaln_2.4.1+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/b1/spaln_2.4.1+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gwqPdUT6/b2/spaln_2.4.1+dfsg-3_i386.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 3.058s) 2.302s 6 calls xz 0.400s 6 calls diff 0.150s 10 calls xxd 0.102s 4 calls cmp 0.102s 4 calls cmp (external) 0.001s 13 calls cmp (internal) ## compare_files (cumulative) (total time: 15.634s) 4.572s 1 call abc.DotChangesFile 4.526s 1 call abc.DebFile 4.352s 2 calls abc.XzFile 1.943s 1 call abc.DebDataTarFile 0.117s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember 0.092s 1 call abc.TarFile 0.032s 1 call abc.Md5sumsFile ## container_extract (total time: 2.986s) 2.303s 6 calls diffoscope.comparators.xz.XzContainer 0.546s 2072 calls diffoscope.comparators.deb.DebTarContainer 0.080s 8 calls diffoscope.comparators.deb.DebContainer 0.058s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.002s) 0.002s 3 calls linediff ## has_same_content_as (total time: 0.104s) 0.055s 2 calls abc.XzFile 0.043s 1 call abc.DebDataTarFile 0.006s 3 calls abc.DebFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.TextFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveMember 0.000s 1 call abc.TarFile 0.000s 1 call abc.DotChangesFile ## main (total time: 5.165s) 5.030s 2 calls outputs 0.135s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.022s) 0.021s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.367s) 0.184s 12 calls diffoscope.comparators.binary.FilesystemFile 0.109s 852 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.057s 256 calls diffoscope.comparators.utils.archive.ArchiveMember 0.017s 162 calls diffoscope.comparators.debian.DebControlMember 0.000s 10 calls abc.DotChangesFile 0.000s 16 calls abc.Md5sumsFile ## specialize (total time: 0.098s) 0.098s 13 calls specialize Tue Jan 9 14:01:26 UTC 2024 E: spaln failed to build reproducibly in bullseye on i386. Tue Jan 9 14:01:27 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/i386/spaln_2.4.1+dfsg-3.diffoscope.html Tue Jan 9 14:01:32 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Jan 9 14:01:32 UTC 2024 I: Submitting 8.0K b1/spaln_2.4.1+dfsg-3_i386.buildinfo.asc Tue Jan 9 14:01:33 UTC 2024 I: Submitting 8.0K b2/spaln_2.4.1+dfsg-3_i386.buildinfo.asc Tue Jan 9 14:01:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 9 14:01:34 UTC 2024 I: Done submitting .buildinfo files. Tue Jan 9 14:01:34 UTC 2024 I: Removing signed spaln_2.4.1+dfsg-3_i386.buildinfo.asc files: removed './b1/spaln_2.4.1+dfsg-3_i386.buildinfo.asc' removed './b2/spaln_2.4.1+dfsg-3_i386.buildinfo.asc'