Fri Jul 31 02:44:30 UTC 2020 I: starting to build libbpp-seq-omics/buster/arm64 on jenkins on '2020-07-31 02:44' Fri Jul 31 02:44:30 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_19/5100/console.log Fri Jul 31 02:44:30 UTC 2020 I: Downloading source for buster/libbpp-seq-omics=2.4.1-3 --2020-07-31 02:44:31-- http://deb.debian.org/debian/pool/main/libb/libbpp-seq-omics/libbpp-seq-omics_2.4.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2216 (2.2K) Saving to: ‘libbpp-seq-omics_2.4.1-3.dsc’ 0K .. 100% 212M=0s 2020-07-31 02:44:31 (212 MB/s) - ‘libbpp-seq-omics_2.4.1-3.dsc’ saved [2216/2216] Fri Jul 31 02:44:31 UTC 2020 I: libbpp-seq-omics_2.4.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev, libbpp-seq-omics3 Architecture: any Version: 2.4.1-3 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1) Package-List: libbpp-seq-omics-dev deb libdevel optional arch=any libbpp-seq-omics3 deb libs optional arch=any Checksums-Sha1: 9474c6f779a2c5aafc580288f97c1c2e33091591 107415 libbpp-seq-omics_2.4.1.orig.tar.gz da2229225c5c245e3dc771dfb8f458c091ff35fd 17080 libbpp-seq-omics_2.4.1-3.debian.tar.xz Checksums-Sha256: 200da925b42065998d825f0b2a37e26b00a865883c85bc332beb3a94cae1e08b 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 959b5526f7a55e5b1b8622b29c10b1fce34ad0914f8bf18d9c513a7048546ee6 17080 libbpp-seq-omics_2.4.1-3.debian.tar.xz Files: fe5d906c557d94ef1341e78f240119d4 107415 libbpp-seq-omics_2.4.1.orig.tar.gz c329ca192173f4c44d7d7d4c6dbc9069 17080 libbpp-seq-omics_2.4.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlyNPFYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEkrA//bdcoNjk2V9IS4wy6q8hHe1009HGplTKj TKY3jAYfUYWwvLDqhaSDRFcSKSQdDlcu4pTFBX1Gm8K/Z5c0/05jrgq1og+c6vFJ 66BogynEUNYx+VFDzxHHjRNqEhLW6t30HFo1EkS2AYHVMpWvRoeP0phgbHzvfwL7 k2gchHysoh40WOGxQ2zvP2O5A39J773RTIglDS0wkWAonQgHTPzqW4ZgNmOW94m+ Y3i//tz5l0/tPi+d/KhqEWdyb2ufGswWwYVlgu7hBJyBanbMpfFvDC7j9i1cy8Q/ nsAefquixdYz9qjpB8B/7fvHQ7CNq1Wg33S3pHkYxttc37O2ZA5JeVRGxeSE3MT9 oc9yq6FALLeImBwissgtSfZ2CSzYYBIe9EJl4CJRUoKJMuy1/mwQag5b3VjWJgtA sHP9m9WVx/w6ziRXZM2tJ9Ua+EUVb0SClVVjCQID27EJ/c48eXReltEqGifqt3iJ o2sFOTG5tvgHlBhglt2gg3CVj0ceFRRnf3Z1xotlaQJOIvTRy+tHF0BzCyta7QMj 097tuk1l381jObsz+Y2xHz4hFSoaxwxxiUlK/gGFml3sF4ZKNWuSn9fBEes/LaZg 897ksHD2p6wzfgpvvlU+GIFPP3O30QZb6ksoiABBfw1IjuIuOQCk8+ZE+UmeKoGd g4ZwiBRysXY= =3F+4 -----END PGP SIGNATURE----- Fri Jul 31 02:44:31 UTC 2020 I: Checking whether the package is not for us Fri Jul 31 02:44:31 UTC 2020 I: Starting 1st build on remote node codethink-sled13-arm64.debian.net. Fri Jul 31 02:44:31 UTC 2020 I: Preparing to do remote build '1' on codethink-sled13-arm64.debian.net. Fri Jul 31 02:47:57 UTC 2020 I: Deleting $TMPDIR on codethink-sled13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 1 21:07:39 -12 2021 I: pbuilder-time-stamp: 1630573659 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-seq-omics_2.4.1-3.dsc] I: copying [./libbpp-seq-omics_2.4.1.orig.tar.gz] I: copying [./libbpp-seq-omics_2.4.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 16 06:11:34 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-seq-omics_2.4.1-3.dsc dpkg-source: info: extracting libbpp-seq-omics in libbpp-seq-omics-2.4.1 dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14683/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14683' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/pbuilderrc_TVwi --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/b1 --logfile b1/build.log libbpp-seq-omics_2.4.1-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 1 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/14683/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-seq-dev (>= 2.4.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.82); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev (>= 2.4.1); however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-seq-dev{a} libbpp-seq12{a} libbsd0{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 126 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libprocps7 arm64 2:3.3.15-2 [58.0 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 procps arm64 2:3.3.15-2 [245 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libarchive13 arm64 3.3.3-4+deb10u1 [291 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 librhash0 arm64 1.3.8-1 [121 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libuv1 arm64 1.24.1-1 [105 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 cmake arm64 3.13.4-1 [3046 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 d-shlibs all 0.84 [17.2 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libbpp-core4 arm64 2.4.1-3 [532 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libbpp-core-dev arm64 2.4.1-3 [920 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libbpp-seq12 arm64 2.4.1-3 [470 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libbpp-seq-dev arm64 2.4.1-3 [750 kB] Fetched 30.0 MB in 12s (2476 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Setting up autotools-dev (20180224.1) ... Setting up libuv1:arm64 (1.24.1-1) ... Setting up libbpp-core4:arm64 (2.4.1-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up d-shlibs (0.84) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:arm64 (1.3.8-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libbpp-seq12:arm64 (2.4.1-3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:arm64 (3.3.3-4+deb10u1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libbpp-core-dev (2.4.1-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-3) ... Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.13.4-1) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbpp-seq-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/libbpp-seq-omics-2.4.1 -B/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/CMakeFiles /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/src /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-seq-omics-shared Scanning dependencies of target bpp-seq-omics-static make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o [ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Fastq.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Fastq.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 39%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o 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src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /build/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' [ 95%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= Scanning dependencies of target test_fastq Scanning dependencies of target test_gff make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o [ 97%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /build/libbpp-seq-omics-2.4.1/test/test_fastq.cpp cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /build/libbpp-seq-omics-2.4.1/test/test_gff.cpp [ 98%] Linking CXX executable test_gff cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbpp-seq-omics-2.4.1=. -fstack-protector-strong 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Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.01 sec make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/libbpp-seq-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/libbpp-seq-omics-2.4.1 -B/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/CMakeFiles /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f 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'/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' [ 47%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend [ 95%] Built target bpp-seq-omics-static make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_gff.dir/DependInfo.cmake --color= cd /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-omics-2.4.1 /build/libbpp-seq-omics-2.4.1/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_fastq.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_fastq.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_gff.dir/build'. make[3]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' [100%] Built target test_gff [100%] Built target test_fastq make[2]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.a -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so.3 -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/libbpp-seq-omics-2.4.1' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbpp-seq-omics3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/aarch64-linux-gnu mv /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3/usr/lib/aarch64-linux-gnu mv /build/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3/usr/lib/aarch64-linux-gnu PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libbpp-seq-omics-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/libbpp-seq-omics-2.4.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libbpp-seq-omics-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-seq-omics3-dbgsym' in '../libbpp-seq-omics3-dbgsym_2.4.1-3_arm64.deb'. dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-3_arm64.deb'. dpkg-deb: building package 'libbpp-seq-omics3' in '../libbpp-seq-omics3_2.4.1-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbpp-seq-omics_2.4.1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14683 and its subdirectories I: Current time: Wed Sep 1 21:10:55 -12 2021 I: pbuilder-time-stamp: 1630573855 Fri Jul 31 02:47:58 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled14-arm64.debian.net. Fri Jul 31 02:47:58 UTC 2020 I: Preparing to do remote build '2' on codethink-sled14-arm64.debian.net. Fri Jul 31 03:02:43 UTC 2020 I: Deleting $TMPDIR on codethink-sled14-arm64.debian.net. Fri Jul 31 03:02:45 UTC 2020 I: libbpp-seq-omics_2.4.1-3_arm64.changes: Format: 1.8 Date: Sat, 16 Mar 2019 19:07:21 +0100 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq-omics3-dbgsym Architecture: arm64 Version: 2.4.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3 - Bio++ Sequence library: genomics components Closes: 924734 Changes: libbpp-seq-omics (2.4.1-3) unstable; urgency=medium . * Rebuild for new version of gcc to fix symbols Closes: #924734 Checksums-Sha1: 2d1b64bcba97cf2c6dafd9e261137825a29d962f 383364 libbpp-seq-omics-dev_2.4.1-3_arm64.deb 766382e74843ccb8837030be8c724475bc614ca7 8705024 libbpp-seq-omics3-dbgsym_2.4.1-3_arm64.deb a0e3af0f77b8158ff5d69287559164def0b8a992 202172 libbpp-seq-omics3_2.4.1-3_arm64.deb d956fddde1c0d4b9da7dee2536c5e0f0b23c6e8e 6294 libbpp-seq-omics_2.4.1-3_arm64.buildinfo Checksums-Sha256: bf0004b4c52bccb0fb77b084cc073361d8ff15e00b9c46678689abd0539ddb2d 383364 libbpp-seq-omics-dev_2.4.1-3_arm64.deb 5e189099a0cf3a5708e6f3cce992e97d520a67611df64bcea48a5ae937724871 8705024 libbpp-seq-omics3-dbgsym_2.4.1-3_arm64.deb 057528c3ac78fdc50d1c0978541fdb192d9ced80f67516f831b1d8c6858b54f7 202172 libbpp-seq-omics3_2.4.1-3_arm64.deb a2a363617eedd46cca920867df5786920e7f11e534a68929ef23dd31caf32352 6294 libbpp-seq-omics_2.4.1-3_arm64.buildinfo Files: 121a4fdf9f5c3d5dbe0c46ee74a465f1 383364 libdevel optional libbpp-seq-omics-dev_2.4.1-3_arm64.deb 1aef37cabc5010840ef69b33f4605664 8705024 debug optional libbpp-seq-omics3-dbgsym_2.4.1-3_arm64.deb e7330d1b323e2a7fab94a82a658671a6 202172 libs optional libbpp-seq-omics3_2.4.1-3_arm64.deb 7dd62bf926f2551def944da6c3e2d006 6294 science optional libbpp-seq-omics_2.4.1-3_arm64.buildinfo Fri Jul 31 03:02:46 UTC 2020 I: diffoscope 153 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/libbpp-seq-omics_2.4.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/libbpp-seq-omics_2.4.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/libbpp-seq-omics_2.4.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/b1/libbpp-seq-omics_2.4.1-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.kL01d6rLBc/b2/libbpp-seq-omics_2.4.1-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.435s) 0.435s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.133s) 0.133s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 31 03:02:48 UTC 2020 I: diffoscope 153 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 31 03:02:48 UTC 2020 I: libbpp-seq-omics from buster built successfully and reproducibly on arm64. Fri Jul 31 03:02:50 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Jul 31 03:02:50 UTC 2020 I: Submitting 8.0K b1/libbpp-seq-omics_2.4.1-3_arm64.buildinfo.asc Fri Jul 31 03:02:51 UTC 2020 I: Submitting 8.0K b2/libbpp-seq-omics_2.4.1-3_arm64.buildinfo.asc Fri Jul 31 03:02:52 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 31 03:02:52 UTC 2020 I: Done submitting .buildinfo files. Fri Jul 31 03:02:52 UTC 2020 I: Removing signed libbpp-seq-omics_2.4.1-3_arm64.buildinfo.asc files: removed './b1/libbpp-seq-omics_2.4.1-3_arm64.buildinfo.asc' removed './b2/libbpp-seq-omics_2.4.1-3_arm64.buildinfo.asc'