Fri Aug 14 06:04:20 UTC 2020 I: starting to build pymol/buster/arm64 on jenkins on '2020-08-14 06:03' Fri Aug 14 06:04:20 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/15104/console.log Fri Aug 14 06:04:20 UTC 2020 I: Downloading source for buster/pymol=2.2.0+dfsg-4 --2020-08-14 06:04:20-- http://deb.debian.org/debian/pool/main/p/pymol/pymol_2.2.0+dfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2423 (2.4K) Saving to: ‘pymol_2.2.0+dfsg-4.dsc’ 0K .. 100% 174M=0s 2020-08-14 06:04:20 (174 MB/s) - ‘pymol_2.2.0+dfsg-4.dsc’ saved [2423/2423] Fri Aug 14 06:04:20 UTC 2020 I: pymol_2.2.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pymol Binary: pymol, python-pymol, python3-pymol, pymol-data Architecture: any all Version: 2.2.0+dfsg-4 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: http://www.pymol.org Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/debichem-team/pymol Vcs-Git: https://salsa.debian.org/debichem-team/pymol.git Testsuite: autopkgtest Testsuite-Triggers: python Build-Depends: debhelper (>= 11~), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libpng-dev, python, python-dev, python-numpy, python-opengl, python-pyqt5, python-pyqt5.qtopengl, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev Package-List: pymol deb science optional arch=all pymol-data deb science optional arch=all python-pymol deb python optional arch=any python3-pymol deb python optional arch=any Checksums-Sha1: d63561f9bff1d9649151dcfa602a0ddf977c218e 10244537 pymol_2.2.0+dfsg.orig.tar.gz 693bfc9e55da2730706b3ba4f7cf13f800c63bb6 57712 pymol_2.2.0+dfsg-4.debian.tar.xz Checksums-Sha256: 19a93043873272ab731087e74ccb085efb0eb5c864c3ea72cae6851a6e49c1ce 10244537 pymol_2.2.0+dfsg.orig.tar.gz 8e69727c2b788437e30929996935e237d63bcc65dded0dd90333c21efb280f9a 57712 pymol_2.2.0+dfsg-4.debian.tar.xz Files: c8d4b034a52506d16100270db8db5fa0 10244537 pymol_2.2.0+dfsg.orig.tar.gz 13b665eb372f18136c1dab6a106162f4 57712 pymol_2.2.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEkOLSwa0Uaht+u4kdu8F+uxOW8vcFAlwsF2sACgkQu8F+uxOW 8vcvSQ//SEK4bjnf3/EBQpa+wdV1L7rEDRryt+AX9GtB8u8V2VepLnIOMIdDVqSp z3IUuxoFMaz/4B345x35wN67O9FgkTDt3XJcmRwKsKxHVT4SCvyA1rfuMsZJESE7 0SZvHTrTkN6dkJlra6udyKk0u4Yys7pQvulIpiv5S3mQiMouIuFw02H/CAzPqScy Bmt30DYRtiPfATA8b52xnEJ8W6x9THI9L3mp6UcO8zyQlp65W15V3AGp37eqR/Un Nan25K8oYrDSmBcp+ZnlVmF/u9kiCgadfHLhUo6LlWHoDlH1daRMEQHS2KnNbTff zGmQIrlJYVCsfjqxZSL6xn0/2WlZZymHnyCj5FT26dOl8pqiktVXYcrs1OquQj6M CoKalTQTJ0UR762bvrSV0YX5/CSapG6nlDnjP/7HjJQYmBe3OYlpJwtOPho66lOh t6c+cSAxSSTfEg4+5ZYdrWOUqB0ENkCDqZkZg6SepPitNjuJQIDZe4knSOB0lbGp ATqM5wOPh2yupnxntgLIuFvBSm3inc2mNWkQlIXW3A2JWZNfeMH5WE654wb3+s9z 0VYJxoaKImXt5uo0S1/1821a00yGuNiyh5GpRynk0znjRo3ElZ9ZkHqw4w16kuUL aP4guw09riFCifIECtF/AizgJ8zJM0a7y668V2XyQaRQMBV5fPI= =hz9j -----END PGP SIGNATURE----- Fri Aug 14 06:04:20 UTC 2020 I: Checking whether the package is not for us Fri Aug 14 06:04:21 UTC 2020 I: Starting 1st build on remote node codethink-sled10-arm64.debian.net. Fri Aug 14 06:04:21 UTC 2020 I: Preparing to do remote build '1' on codethink-sled10-arm64.debian.net. Fri Aug 14 06:25:21 UTC 2020 I: Deleting $TMPDIR on codethink-sled10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 13 18:04:37 -12 2020 I: pbuilder-time-stamp: 1597385077 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymol_2.2.0+dfsg-4.dsc] I: copying [./pymol_2.2.0+dfsg.orig.tar.gz] I: copying [./pymol_2.2.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 1 13:44:11 2019 -12 gpgv: using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_2.2.0+dfsg-4.dsc dpkg-source: info: extracting pymol in pymol-2.2.0+dfsg dpkg-source: info: unpacking pymol_2.2.0+dfsg.orig.tar.gz dpkg-source: info: unpacking pymol_2.2.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch dpkg-source: info: applying 50_py3-class-tests.patch dpkg-source: info: applying 60_py3-cmp.patch dpkg-source: info: applying 70_glext-fix.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19815/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19815' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/pbuilderrc_mRwN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/b1 --logfile b1/build.log pymol_2.2.0+dfsg-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled10-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 12 20:27 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/19815/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libpng-dev, python, python-dev, python-numpy, python-opengl, python-pyqt5, python-pyqt5.qtopengl, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freeglut3-dev; however: Package freeglut3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreetype6-dev; however: Package libfreetype6-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew1.5-dev; however: Package libglew1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-opengl; however: Package python-opengl is not installed. pbuilder-satisfydepends-dummy depends on python-pyqt5; however: Package python-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python-pyqt5.qtopengl; however: Package python-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-opengl; however: Package python3-opengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdbus-1-3{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-etnaviv1{a} libdrm-freedreno1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm-tegra0{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfreetype6-dev{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl1-mesa-glx{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.1{a} libglib2.0-0{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libllvm7{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libmtdev1{a} libncurses6{a} libopengl0{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libreadline7{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtiff5{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm-dev{a} libxxf86vm1{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mesa-common-dev{a} mime-support{a} po-debconf{a} poppler-data{a} python{a} python-dev{a} python-enum34{a} python-minimal{a} python-numpy{a} python-opengl{a} python-pkg-resources{a} python-pyqt5{a} python-pyqt5.qtopengl{a} python-sip{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-sip{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libwacom-bin libx11-protocol-perl lmodern lynx qt5-gtk-platformtheme qttranslations5-l10n shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 284 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After unpacking 832 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 poppler-data all 0.4.9-2 [1473 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 tex-common all 6.11 [53.1 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 fontconfig arm64 2.13.1-2 [405 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libglvnd0 arm64 1.1.0-1 [42.4 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libdrm2 arm64 2.4.97-1 [39.5 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libglapi-mesa arm64 18.3.6-2+deb10u1 [74.8 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libx11-xcb1 arm64 2:1.6.7-1 [190 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libxcb-dri2-0 arm64 1.13.1-2 [101 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libxcb-dri3-0 arm64 1.13.1-2 [100 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libxcb-glx0 arm64 1.13.1-2 [116 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libxcb-present0 arm64 1.13.1-2 [99.1 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libxcb-sync1 arm64 1.13.1-2 [102 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libxdamage1 arm64 1:1.1.4-3+b3 [14.8 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 89 http://deb.debian.org/debian buster/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libdrm-amdgpu1 arm64 2.4.97-1 [26.6 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libdrm-etnaviv1 arm64 2.4.97-1 [21.0 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libdrm-nouveau2 arm64 2.4.97-1 [25.5 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libdrm-radeon1 arm64 2.4.97-1 [30.0 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get: 96 http://deb.debian.org/debian buster/main arm64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libsensors5 arm64 1:3.5.0-3 [51.8 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-dri arm64 18.3.6-2+deb10u1 [4910 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libglx-mesa0 arm64 18.3.6-2+deb10u1 [180 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libglx0 arm64 1.1.0-1 [29.0 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libgl1 arm64 1.1.0-1 [92.5 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-glx arm64 18.3.6-2+deb10u1 [47.4 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 freeglut3 arm64 2.8.1-3 [114 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 x11proto-dev all 2018.4-4 [251 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 108 http://deb.debian.org/debian buster/main arm64 libxau-dev arm64 1:1.0.8-1+b2 [22.8 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 xtrans-dev all 1.3.5-1 [100 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get: 112 http://deb.debian.org/debian buster/main arm64 libxcb1-dev arm64 1.13.1-2 [174 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libx11-dev arm64 2:1.6.7-1 [816 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libdrm-freedreno1 arm64 2.4.97-1 [27.8 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 libdrm-tegra0 arm64 2.4.97-1 [15.8 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 libdrm-dev arm64 2.4.97-1 [135 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 mesa-common-dev arm64 18.3.6-2+deb10u1 [611 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libglvnd-core-dev arm64 1.1.0-1 [13.2 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libwayland-server0 arm64 1.16.0-1 [31.8 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libgbm1 arm64 18.3.6-2+deb10u1 [67.1 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 libwayland-client0 arm64 1.16.0-1 [25.9 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libxcb-xfixes0 arm64 1.13.1-2 [103 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 libegl-mesa0 arm64 18.3.6-2+deb10u1 [130 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 libegl1 arm64 1.1.0-1 [32.8 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 libgles1 arm64 1.1.0-1 [14.3 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 libgles2 arm64 1.1.0-1 [19.8 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 libopengl0 arm64 1.1.0-1 [34.4 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 libglvnd-dev arm64 1.1.0-1 [5128 B] Get: 129 http://deb.debian.org/debian buster/main arm64 libx11-xcb-dev arm64 2:1.6.7-1 [192 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libxcb-dri3-dev arm64 1.13.1-2 [101 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 libxcb-randr0 arm64 1.13.1-2 [110 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 libxcb-render0-dev arm64 1.13.1-2 [113 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libxcb-randr0-dev arm64 1.13.1-2 [115 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 libxcb-shape0 arm64 1.13.1-2 [99.6 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 libxcb-shape0-dev arm64 1.13.1-2 [101 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 libxcb-xfixes0-dev arm64 1.13.1-2 [106 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 libxcb-sync-dev arm64 1.13.1-2 [105 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 libxcb-present-dev arm64 1.13.1-2 [101 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 libxshmfence-dev arm64 1.3-1 [8212 B] Get: 141 http://deb.debian.org/debian buster/main arm64 libxcb-dri2-0-dev arm64 1.13.1-2 [102 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 libxcb-glx0-dev arm64 1.13.1-2 [122 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 144 http://deb.debian.org/debian buster/main arm64 libxfixes-dev arm64 1:5.0.3-1 [23.2 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 146 http://deb.debian.org/debian buster/main arm64 libxdamage-dev arm64 1:1.1.4-3+b3 [14.8 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 148 http://deb.debian.org/debian buster/main arm64 libxext-dev arm64 2:1.3.3-1+b2 [104 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 150 http://deb.debian.org/debian buster/main arm64 libxxf86vm-dev arm64 1:1.1.4-1+b2 [25.1 kB] Get: 151 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-dev arm64 18.3.6-2+deb10u1 [48.0 kB] Get: 152 http://deb.debian.org/debian buster/main arm64 libglu1-mesa arm64 9.0.0-2.1+b3 [146 kB] Get: 153 http://deb.debian.org/debian buster/main arm64 libglu1-mesa-dev arm64 9.0.0-2.1+b3 [186 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 155 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 156 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 157 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 158 http://deb.debian.org/debian buster/main arm64 libxt6 arm64 1:1.1.5-1+b3 [175 kB] Get: 159 http://deb.debian.org/debian buster/main arm64 libice-dev arm64 2:1.0.9-2 [62.0 kB] Get: 160 http://deb.debian.org/debian buster/main arm64 libsm-dev arm64 2:1.2.3-1 [37.4 kB] Get: 161 http://deb.debian.org/debian buster/main arm64 libxt-dev arm64 1:1.1.5-1+b3 [424 kB] Get: 162 http://deb.debian.org/debian buster/main arm64 freeglut3-dev arm64 2.8.1-3 [171 kB] Get: 163 http://deb.debian.org/debian buster/main arm64 icu-devtools arm64 63.1-6+deb10u1 [179 kB] Get: 164 http://deb.debian.org/debian buster/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get: 165 http://deb.debian.org/debian buster/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get: 166 http://deb.debian.org/debian buster/main arm64 libdbus-1-3 arm64 1.12.20-0+deb10u1 [206 kB] Get: 167 http://deb.debian.org/debian buster/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get: 168 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 169 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 170 http://deb.debian.org/debian buster/main arm64 libbrotli1 arm64 1.0.7-2 [261 kB] Get: 171 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 172 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 173 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 174 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 175 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 176 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 177 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 178 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 179 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 180 http://deb.debian.org/debian buster/main arm64 libcups2 arm64 2.2.10-6+deb10u3 [310 kB] Get: 181 http://deb.debian.org/debian buster/main arm64 libcupsimage2 arm64 2.2.10-6+deb10u3 [132 kB] Get: 182 http://deb.debian.org/debian buster/main arm64 libdouble-conversion1 arm64 3.1.0-3 [36.0 kB] Get: 183 http://deb.debian.org/debian buster/main arm64 libevdev2 arm64 1.6.0+dfsg-1 [29.2 kB] Get: 184 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 185 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 186 http://deb.debian.org/debian buster/main arm64 libpng-dev arm64 1.6.36-6 [297 kB] Get: 187 http://deb.debian.org/debian buster/main arm64 libfreetype6-dev arm64 2.9.1-3+deb10u1 [526 kB] Get: 188 http://deb.debian.org/debian buster/main arm64 libglew2.1 arm64 2.1.0-4 [160 kB] Get: 189 http://deb.debian.org/debian buster/main arm64 libglew-dev arm64 2.1.0-4 [141 kB] Get: 190 http://deb.debian.org/debian buster/main arm64 libglm-dev all 0.9.9.3-2 [175 kB] Get: 191 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 192 http://deb.debian.org/debian buster/main arm64 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 193 http://deb.debian.org/debian buster/main arm64 libidn11 arm64 1.33-2.2 [113 kB] Get: 194 http://deb.debian.org/debian buster/main arm64 libijs-0.35 arm64 0.35-14 [17.9 kB] Get: 195 http://deb.debian.org/debian buster/main arm64 libjbig2dec0 arm64 0.16-1 [58.1 kB] Get: 196 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 197 http://deb.debian.org/debian buster/main arm64 liblcms2-2 arm64 2.9-3 [137 kB] Get: 198 http://deb.debian.org/debian buster/main arm64 libopenjp2-7 arm64 2.3.0-2+deb10u1 [148 kB] Get: 199 http://deb.debian.org/debian buster/main arm64 libpaper1 arm64 1.1.28 [21.1 kB] Get: 200 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 201 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 202 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 203 http://deb.debian.org/debian buster/main arm64 libgs9 arm64 9.27~dfsg-2+deb10u3 [2029 kB] Get: 204 http://deb.debian.org/debian buster/main arm64 libgudev-1.0-0 arm64 232-2 [11.6 kB] Get: 205 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 206 http://deb.debian.org/debian buster/main arm64 libharfbuzz-icu0 arm64 2.3.1-1 [834 kB] Get: 207 http://deb.debian.org/debian buster/main arm64 libicu-dev arm64 63.1-6+deb10u1 [9062 kB] Get: 208 http://deb.debian.org/debian buster/main arm64 libwacom-common all 0.32-1 [39.1 kB] Get: 209 http://deb.debian.org/debian buster/main arm64 libwacom2 arm64 0.32-1 [17.9 kB] Get: 210 http://deb.debian.org/debian buster/main arm64 libinput-bin arm64 1.12.6-2+deb10u1 [17.1 kB] Get: 211 http://deb.debian.org/debian buster/main arm64 libmtdev1 arm64 1.1.5-1+b1 [21.3 kB] Get: 212 http://deb.debian.org/debian buster/main arm64 libinput10 arm64 1.12.6-2+deb10u1 [97.8 kB] Get: 213 http://deb.debian.org/debian buster/main arm64 libkpathsea6 arm64 2018.20181218.49446-1 [164 kB] Get: 214 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 215 http://deb.debian.org/debian buster/main arm64 libpaper-utils arm64 1.1.28 [18.0 kB] Get: 216 http://deb.debian.org/debian buster/main arm64 libpcre2-16-0 arm64 10.32-5 [176 kB] Get: 217 http://deb.debian.org/debian buster/main arm64 libpotrace0 arm64 1.15-1 [23.6 kB] Get: 218 http://deb.debian.org/debian buster/main arm64 libptexenc1 arm64 2018.20181218.49446-1 [60.3 kB] Get: 219 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 220 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 221 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 222 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 223 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u2 [1371 kB] Get: 224 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u2 [2380 kB] Get: 225 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 226 http://deb.debian.org/debian buster/main arm64 libpython3-all-dev arm64 3.7.3-1 [1068 B] Get: 227 http://deb.debian.org/debian buster/main arm64 libqt5core5a arm64 5.11.3+dfsg1-1+deb10u3 [1796 kB] Get: 228 http://deb.debian.org/debian buster/main arm64 libqt5dbus5 arm64 5.11.3+dfsg1-1+deb10u3 [217 kB] Get: 229 http://deb.debian.org/debian buster/main arm64 libqt5network5 arm64 5.11.3+dfsg1-1+deb10u3 [631 kB] Get: 230 http://deb.debian.org/debian buster/main arm64 libxcb-icccm4 arm64 0.4.1-1.1 [26.9 kB] Get: 231 http://deb.debian.org/debian buster/main arm64 libxcb-util0 arm64 0.3.8-3+b2 [22.5 kB] Get: 232 http://deb.debian.org/debian buster/main arm64 libxcb-image0 arm64 0.4.0-1+b2 [23.2 kB] Get: 233 http://deb.debian.org/debian buster/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get: 234 http://deb.debian.org/debian buster/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get: 235 http://deb.debian.org/debian buster/main arm64 libxcb-xinerama0 arm64 1.13.1-2 [98.9 kB] Get: 236 http://deb.debian.org/debian buster/main arm64 libxcb-xkb1 arm64 1.13.1-2 [122 kB] Get: 237 http://deb.debian.org/debian buster/main arm64 xkb-data all 2.26-2 [681 kB] Get: 238 http://deb.debian.org/debian buster/main arm64 libxkbcommon0 arm64 0.8.2-1 [118 kB] Get: 239 http://deb.debian.org/debian buster/main arm64 libxkbcommon-x11-0 arm64 0.8.2-1 [39.0 kB] Get: 240 http://deb.debian.org/debian buster/main arm64 libqt5gui5 arm64 5.11.3+dfsg1-1+deb10u3 [2577 kB] Get: 241 http://deb.debian.org/debian buster/main arm64 libqt5widgets5 arm64 5.11.3+dfsg1-1+deb10u3 [2141 kB] Get: 242 http://deb.debian.org/debian buster/main arm64 libqt5xml5 arm64 5.11.3+dfsg1-1+deb10u3 [123 kB] Get: 243 http://deb.debian.org/debian buster/main arm64 libqt5designer5 arm64 5.11.3-4 [2731 kB] Get: 244 http://deb.debian.org/debian buster/main arm64 libqt5sql5 arm64 5.11.3+dfsg1-1+deb10u3 [139 kB] Get: 245 http://deb.debian.org/debian buster/main arm64 libqt5help5 arm64 5.11.3-4 [142 kB] Get: 246 http://deb.debian.org/debian buster/main arm64 libqt5opengl5 arm64 5.11.3+dfsg1-1+deb10u3 [153 kB] Get: 247 http://deb.debian.org/debian buster/main arm64 libqt5printsupport5 arm64 5.11.3+dfsg1-1+deb10u3 [210 kB] Get: 248 http://deb.debian.org/debian buster/main arm64 libqt5test5 arm64 5.11.3+dfsg1-1+deb10u3 [141 kB] Get: 249 http://deb.debian.org/debian buster/main arm64 libsynctex2 arm64 2018.20181218.49446-1 [77.8 kB] Get: 250 http://deb.debian.org/debian buster/main arm64 libteckit0 arm64 2.5.8+ds2-5 [284 kB] Get: 251 http://deb.debian.org/debian buster/main arm64 libtexlua52 arm64 2018.20181218.49446-1 [107 kB] Get: 252 http://deb.debian.org/debian buster/main arm64 libtexlua53 arm64 2018.20181218.49446-1 [118 kB] Get: 253 http://deb.debian.org/debian buster/main arm64 libwoff1 arm64 1.0.2-1 [40.7 kB] Get: 254 http://deb.debian.org/debian buster/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 255 http://deb.debian.org/debian buster/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 256 http://deb.debian.org/debian buster/main arm64 libxaw7 arm64 2:1.0.13-1+b2 [167 kB] Get: 257 http://deb.debian.org/debian buster/main arm64 libxml2-dev arm64 2.9.4+dfsg1-7+b3 [747 kB] Get: 258 http://deb.debian.org/debian buster/main arm64 libxxhash0 arm64 0.6.5-2 [7684 B] Get: 259 http://deb.debian.org/debian buster/main arm64 libzzip-0-13 arm64 0.13.62-3.2 [55.5 kB] Get: 260 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 261 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 262 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 263 http://deb.debian.org/debian buster/main arm64 python-enum34 all 1.1.6-2 [35.3 kB] Get: 264 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 265 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 266 http://deb.debian.org/debian buster/main arm64 python-opengl all 3.1.0+dfsg-2 [490 kB] Get: 267 http://deb.debian.org/debian buster/main arm64 python-sip arm64 4.19.14+dfsg-2 [168 kB] Get: 268 http://deb.debian.org/debian buster/main arm64 python-pyqt5 arm64 5.11.3+dfsg-1+b3 [2036 kB] Get: 269 http://deb.debian.org/debian buster/main arm64 python-pyqt5.qtopengl arm64 5.11.3+dfsg-1+b3 [171 kB] Get: 270 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 271 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u2 [509 kB] Get: 272 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 273 http://deb.debian.org/debian buster/main arm64 python3-all-dev arm64 3.7.3-1 [1064 B] Get: 274 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 275 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Get: 276 http://deb.debian.org/debian buster/main arm64 python3-opengl all 3.1.0+dfsg-2 [491 kB] Get: 277 http://deb.debian.org/debian buster/main arm64 python3-sip arm64 4.19.14+dfsg-2 [168 kB] Get: 278 http://deb.debian.org/debian buster/main arm64 python3-pyqt5 arm64 5.11.3+dfsg-1+b3 [2177 kB] Get: 279 http://deb.debian.org/debian buster/main arm64 python3-pyqt5.qtopengl arm64 5.11.3+dfsg-1+b3 [173 kB] Get: 280 http://deb.debian.org/debian buster/main arm64 t1utils arm64 1.41-3 [59.7 kB] Get: 281 http://deb.debian.org/debian buster/main arm64 texlive-binaries arm64 2018.20181218.49446-1 [8464 kB] Get: 282 http://deb.debian.org/debian buster/main arm64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 283 http://deb.debian.org/debian buster/main arm64 texlive-base all 2018.20190227-2 [19.7 MB] Get: 284 http://deb.debian.org/debian buster/main arm64 texlive-latex-base all 2018.20190227-2 [984 kB] Fetched 180 MB in 9s (20.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... 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Setting up libtexlua53:arm64 (2018.20181218.49446-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:arm64 (1.1.0-1) ... Setting up libijs-0.35:arm64 (0.35-14) ... Setting up libbrotli1:arm64 (1.0.7-2) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up libzzip-0-13:arm64 (0.13.62-3.2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libpcre2-16-0:arm64 (10.32-5) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libopengl0:arm64 (1.1.0-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libgles2:arm64 (1.1.0-1) ... Setting up libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libjbig2dec0:arm64 (0.16-1) ... Setting up libidn11:arm64 (1.33-2.2) ... Setting up libteckit0:arm64 (2.5.8+ds2-5) ... Setting up libavahi-common-data:arm64 (0.7-4+b1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libgles1:arm64 (1.1.0-1) ... Setting up libdbus-1-3:arm64 (1.12.20-0+deb10u1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up t1utils (1.41-3) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:arm64 (0.6.1-2) ... 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Setting up libevdev2:arm64 (1.6.0+dfsg-1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:arm64 (63.1-6+deb10u1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libdouble-conversion1:arm64 (3.1.0-3) ... Setting up libgudev-1.0-0:arm64 (232-2) ... Setting up libsynctex2:arm64 (2018.20181218.49446-1) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:arm64 (0.8.2-1) ... Setting up libpotrace0:arm64 (1.15-1) ... Setting up libwayland-client0:arm64 (1.16.0-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libxcb-xfixes0:arm64 (1.13.1-2) ... Setting up libxau-dev:arm64 (1:1.0.8-1+b2) ... Setting up libwoff1:arm64 (1.0.2-1) ... Setting up libice-dev:arm64 (2:1.0.9-2) ... Setting up libpython3.7:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libxshmfence-dev:arm64 (1.3-1) ... Setting up libpython3.7-dev:arm64 (3.7.3-2+deb10u2) ... Setting up libxcb-glx0:arm64 (1.13.1-2) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libpng-dev:arm64 (1.6.36-6) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1+b2) ... Setting up libxcb-shape0:arm64 (1.13.1-2) ... Setting up libavahi-common3:arm64 (0.7-4+b1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:arm64 (0.3.9-1+b1) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1) ... Setting up libxcb-util0:arm64 (0.3.8-3+b2) ... Setting up libxcb-xkb1:arm64 (1.13.1-2) ... Setting up libxcb-image0:arm64 (0.4.0-1+b2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libxcb-present0:arm64 (1.13.1-2) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libxml2-dev:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb-xinerama0:arm64 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libptexenc1:arm64 (2018.20181218.49446-1) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up libxcb-sync1:arm64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:arm64 (0.8.2-1) ... Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libqt5core5a:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:arm64 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:arm64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libxcb-randr0:arm64 (1.13.1-2) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libqt5test5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libwacom2:arm64 (0.32-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:arm64 (0.7-4+b1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:arm64 (1.13.1-2) ... Setting up libpaper1:arm64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up libdrm-nouveau2:arm64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:arm64 (2.3.1-1) ... Setting up libdrm-etnaviv1:arm64 (2.4.97-1) ... Setting up libpython3-dev:arm64 (3.7.3-1) ... Setting up libxcb1-dev:arm64 (1.13.1-2) ... Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libgbm1:arm64 (18.3.6-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libsm-dev:arm64 (2:1.2.3-1) ... Setting up libdrm-radeon1:arm64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libgl1-mesa-dri:arm64 (18.3.6-2+deb10u1) ... Setting up libx11-dev:arm64 (2:1.6.7-1) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:arm64 (1.13.1-2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u2) ... Setting up libqt5network5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libfreetype6-dev:arm64 (2.9.1-3+deb10u1) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libqt5xml5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libegl-mesa0:arm64 (18.3.6-2+deb10u1) ... Setting up libxcb-dri2-0-dev:arm64 (1.13.1-2) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libpython3-all-dev:arm64 (3.7.3-1) ... Setting up libdrm-freedreno1:arm64 (2.4.97-1) ... Setting up libxcb-render0-dev:arm64 (1.13.1-2) ... Setting up libxcb-glx0-dev:arm64 (1.13.1-2) ... Setting up libxt6:arm64 (1:1.1.5-1+b3) ... Setting up libdrm-tegra0:arm64 (2.4.97-1) ... Setting up libxcb-shape0-dev:arm64 (1.13.1-2) ... Setting up libxext-dev:arm64 (2:1.3.3-1+b2) ... Setting up libcups2:arm64 (2.2.10-6+deb10u3) ... Setting up libegl1:arm64 (1.1.0-1) ... Setting up libxcb-sync-dev:arm64 (1.13.1-2) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up libxcb-xfixes0-dev:arm64 (1.13.1-2) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-sip (4.19.14+dfsg-2) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libinput10:arm64 (1.12.6-2+deb10u1) ... Setting up python-enum34 (1.1.6-2) ... Setting up libx11-xcb-dev:arm64 (2:1.6.7-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-dev:arm64 (2.4.97-1) ... Setting up libxmu6:arm64 (2:1.1.2-2+b3) ... Setting up libxdamage1:arm64 (1:1.1.4-3+b3) ... Setting up python2-dev (2.7.16-1) ... Setting up libxi6:arm64 (2:1.7.9-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:arm64 (1:1.1.4-1+b2) ... Setting up python3-all (3.7.3-1) ... Setting up libxaw7:arm64 (2:1.0.13-1+b2) ... Setting up libcairo2:arm64 (1.16.0-4) ... Setting up libcupsimage2:arm64 (2.2.10-6+deb10u3) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up libxfixes-dev:arm64 (1:5.0.3-1) ... Setting up libxcb-randr0-dev:arm64 (1.13.1-2) ... Setting up libxt-dev:arm64 (1:1.1.5-1+b3) ... Setting up libxcb-present-dev:arm64 (1.13.1-2) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up mesa-common-dev:arm64 (18.3.6-2+deb10u1) ... Setting up python-sip (4.19.14+dfsg-2) ... Setting up python-dev (2.7.16-1) ... Setting up libxdamage-dev:arm64 (1:1.1.4-3+b3) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libglx-mesa0:arm64 (18.3.6-2+deb10u1) ... Setting up libgs9:arm64 (9.27~dfsg-2+deb10u3) ... Setting up libglx0:arm64 (1.1.0-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up libgl1:arm64 (1.1.0-1) ... Setting up libgl1-mesa-glx:arm64 (18.3.6-2+deb10u1) ... Setting up libglew2.1:arm64 (2.1.0-4) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libglu1-mesa:arm64 (9.0.0-2.1+b3) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up freeglut3:arm64 (2.8.1-3) ... Setting up python-opengl (3.1.0+dfsg-2) ... Setting up libqt5gui5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libglvnd-dev:arm64 (1.1.0-1) ... Setting up libqt5widgets5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up python3-opengl (3.1.0+dfsg-2) ... Setting up libqt5help5:arm64 (5.11.3-4) ... Setting up libqt5printsupport5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up libqt5opengl5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libgl1-mesa-dev:arm64 (18.3.6-2+deb10u1) ... Setting up libqt5designer5:arm64 (5.11.3-4) ... Setting up python-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up libglu1-mesa-dev:arm64 (9.0.0-2.1+b3) ... Setting up python3-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up python3-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up freeglut3-dev:arm64 (2.8.1-3) ... Setting up libglew-dev:arm64 (2.1.0-4) ... Setting up python-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pymol-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stuart Prescott dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/pymol-2.2.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' debian/rules build dh build --with python2,python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build --pyqt PyQt5 running build running build_py creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-arm64-2.7 creating build/temp.linux-arm64-2.7/build creating build/temp.linux-arm64-2.7/build/generated creating build/temp.linux-arm64-2.7/contrib creating build/temp.linux-arm64-2.7/contrib/uiuc creating build/temp.linux-arm64-2.7/contrib/uiuc/plugins creating build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-arm64-2.7/layer0 creating build/temp.linux-arm64-2.7/layer1 creating build/temp.linux-arm64-2.7/layer2 creating build/temp.linux-arm64-2.7/layer3 creating build/temp.linux-arm64-2.7/layer4 creating build/temp.linux-arm64-2.7/layer5 creating build/temp.linux-arm64-2.7/modules creating build/temp.linux-arm64-2.7/modules/cealign creating build/temp.linux-arm64-2.7/modules/cealign/src creating build/temp.linux-arm64-2.7/ov creating build/temp.linux-arm64-2.7/ov/src aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-arm64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:141:32: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_binary_header_t *abinit_header_malloc() ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:154:29: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_plugindata_t *abinit_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] sprintf(atom->resname, "%d", resid); ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] sprintf(atom->resname, "%d", resid); ^~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,parm7, ~~~~~~^~~~~~~~~~~~ &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Jparm, &prm->Nparm); ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, ~~~~~~^~~~~~~~~~~~~ &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natyp, &prm->Nphb); ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ~~~~~^~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] sprintf(data->basis_string, "%d-%s%sG%s", ^~ ngauss, (data->gbasis+1), diffuse, ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] sprintf(data->basis_string, "STO-%dG%s%s", ^~ ngauss, diffuse, polarization); ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (NULL == fgets(fbuffer, 1024, data->file)) ^~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Box[0], &prm->Box[1], &prm->Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natcap, &prm->Cutcap, ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Xcap, &prm->Ycap, &prm->Zcap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(int), 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (str, len, 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 8, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] strncpy(tmptype, atom->type, sizeof(atom->type)); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-arm64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-arm64-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-arm64-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:46: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-arm64-2.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-arm64-2.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", ^~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-arm64-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); ^~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf(answer, "%03x/%03x/", d1, d2); ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-arm64-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-arm64-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-arm64-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(subsub, "%03x", j); ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-arm64-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-arm64-2.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-arm64-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-arm64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-arm64-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-arm64-2.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-arm64-2.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-arm64-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-arm64-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-arm64-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-arm64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-arm64-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-arm64-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-arm64-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-arm64-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-arm64-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-arm64-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-arm64-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-arm64-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-arm64-2.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-arm64-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-arm64-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-arm64-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 + min_frame, 1 + max_frame, extra); ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 34 and 1077 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1741:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 989 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mcopy(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1060 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1770:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mdelete(%d,%d%s)", I->DragStartFrame - I->DragCurFrame, first+1, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1766:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.minsert(%d,%d%s)", I->DragCurFrame - I->DragStartFrame, first, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1727:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 990 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mmove(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1059 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-arm64-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-arm64-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-arm64-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-arm64-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-arm64-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-arm64-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-arm64-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-arm64-2.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-arm64-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-arm64-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-arm64-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-arm64-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-arm64-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-arm64-2.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-arm64-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-arm64-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-arm64-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-arm64-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-arm64-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-arm64-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-arm64-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-arm64-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-arm64-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] "Transform {\n" ^~~~~~~~~~~~~~~ " translation %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " rotation %8.6f %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " children [\n" ~~~~~~~~~~~~~~~ "%s" ~~~~ " ]\n" ~~~~~~ "}\n", ~~~~~ layer1/Ray.cpp:1558:72: vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Ray.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-arm64-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/PConv.cpp:38: warning: "PyString_Check" redefined #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) In file included from /usr/include/python2.7/Python.h:97, from layer0/os_python.h:34, from layer1/PConv.cpp:17: /usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition #define PyString_Check(op) \ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-arm64-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-arm64-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-arm64-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-arm64-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-arm64-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-arm64-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-arm64-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-arm64-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-arm64-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-arm64-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-arm64-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-arm64-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-arm64-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-arm64-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-arm64-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-arm64-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-arm64-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4103:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3971:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3971:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3988:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3988:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~ layer1/Scene.cpp:3996:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:3996:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024 sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3856:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3856:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3862:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:3862:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3891:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3891:17: note: in expansion of macro 'PRINTF' PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3904:50: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:262:98: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255 #define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; if(Feedback(G,sysmod,mask)) {(snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3904:17: note: in expansion of macro 'PRINTFB' PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~ layer1/Scene.cpp:4162:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4162:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4196:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4196:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4187:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4187:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4247:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4247:31: note: directive argument in the range [-2147483647, 2147483647] layer1/Scene.cpp:4247:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024 sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4218:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.origin(\"%s\")", buf1); ^~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4218:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024 sprintf(buffer, "cmd.origin(\"%s\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4225:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4225:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4312:29: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ^~~~~~~~ layer1/Scene.cpp:4312:22: note: 'sprintf' output 3 or more bytes (assuming 1026) into a destination of size 1024 sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4319:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ layer1/Scene.cpp:4319:26: note: 'sprintf' output 20 or more bytes (assuming 1298) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~~ layer1/Scene.cpp:4294:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4294:22: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4303:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4303:26: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4306:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~ layer1/Scene.cpp:4306:26: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4271:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ^~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:4271:20: note: 'sprintf' output 5 or more bytes (assuming 1028) into a destination of size 1024 sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4282:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~ layer1/Scene.cpp:4282:24: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-arm64-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-arm64-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-arm64-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-arm64-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-arm64-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-arm64-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-arm64-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-arm64-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-arm64-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-arm64-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-arm64-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-arm64-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-arm64-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-arm64-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-arm64-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-arm64-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-arm64-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-arm64-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-arm64-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:1543:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-arm64-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 289 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-arm64-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-arm64-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-arm64-2.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-arm64-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-arm64-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-arm64-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:10004:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:9991:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:10016:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] " Unbond: %d bonds removed from model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-arm64-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12098:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12098:17: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:12181:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Getting: %s for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12181:8: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 38 and 556 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12283:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12283:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12302:7: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is not a bond-level setting\n", name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12359:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s unset for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, rec->obj->Name ENDF(G); ~~~~ layer3/Executive.cpp:12359:15: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 44 and 562 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-arm64-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12597:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 296) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12453:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12450:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12450:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12574:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12574:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12567:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12409:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12756:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12756:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12791:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12823:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12823:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12815:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12719:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)': layer3/Executive.cpp:12888:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12888:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12880:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12859:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)': layer3/Executive.cpp:12998:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] " Setting: %s unset for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13017:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-arm64-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-arm64-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)': layer4/Cmd.cpp:7060:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order_input, (location == -2) ? "upper" : "current"); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 1057 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-arm64-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer, v[0], v[1], v[2], state + 1, mode, 0); ~~~~~~ layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-arm64-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15053:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15059:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2302:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetName(PyMOLGlobals*, const char*, const char*)': layer3/Executive.cpp:3561:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 234 [-Wformat-truncation=] "SetName-Error: name '%s' is a selection keyword.\n", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 48 and 303 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:5242:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)': layer3/Executive.cpp:7616:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 751 and 1008 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 30 and 1310 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:7625:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-arm64-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-arm64-2.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 19 and 1042 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14718:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=] "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ new_name, name, (int)a, x, y, z ENDFB(G); ~~~~~~~~ layer3/Executive.cpp:14718:21: note: using the range [-2147483648, 2147483647] for directive argument layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 52 or more bytes (assuming 1078) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4238:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4236:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4236:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4225:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4225:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4216:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4216:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4214:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4214:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4203:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4203:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4401:39: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(align_name, "%s_%s_alignment", ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-arm64-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-arm64-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-arm64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-arm64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0); ~~~~ layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 4124 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-arm64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s2, s2); ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 37 and 2083 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-arm64-2.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)': layer3/Editor.cpp:1903:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Editor: grabbing (%s).", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 22 and 277 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-arm64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); ^~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 264 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:340:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] sprintf(buffer, "(bychain %s)", name); ^~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 266 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:342:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] sprintf(buffer, "(byobject %s)", name); ^~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-arm64-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-arm64-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-arm64-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-arm64-2.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-arm64-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-arm64-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-arm64-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-arm64-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 147 and 914 [-Wformat-overflow=] "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/PyMOL.cpp:2856:70: ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer5/PyMOL.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1134) into a destination of size 1025 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-arm64-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-arm64-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *myArgv[8] = {"pymol"}; ^ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-arm64-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-arm64-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-arm64-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10828:6: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", line ENDFB(G); ^~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10833:4: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s\n", line ENDFB(G); ^~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 1025 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/build/generated/ShaderText.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-arm64-2.7/layer0/Block.o build/temp.linux-arm64-2.7/layer0/Crystal.o build/temp.linux-arm64-2.7/layer0/Debug.o build/temp.linux-arm64-2.7/layer0/Deferred.o build/temp.linux-arm64-2.7/layer0/Err.o build/temp.linux-arm64-2.7/layer0/Feedback.o build/temp.linux-arm64-2.7/layer0/Field.o build/temp.linux-arm64-2.7/layer0/File.o build/temp.linux-arm64-2.7/layer0/GenericBuffer.o build/temp.linux-arm64-2.7/layer0/GraphicsUtil.o build/temp.linux-arm64-2.7/layer0/Isosurf.o build/temp.linux-arm64-2.7/layer0/Map.o build/temp.linux-arm64-2.7/layer0/Match.o build/temp.linux-arm64-2.7/layer0/Matrix.o build/temp.linux-arm64-2.7/layer0/MemoryCache.o build/temp.linux-arm64-2.7/layer0/MemoryDebug.o build/temp.linux-arm64-2.7/layer0/MyPNG.o build/temp.linux-arm64-2.7/layer0/Parse.o build/temp.linux-arm64-2.7/layer0/Pixmap.o build/temp.linux-arm64-2.7/layer0/Queue.o build/temp.linux-arm64-2.7/layer0/ShaderMgr.o build/temp.linux-arm64-2.7/layer0/ShaderPrg.o build/temp.linux-arm64-2.7/layer0/Sphere.o build/temp.linux-arm64-2.7/layer0/Tetsurf.o build/temp.linux-arm64-2.7/layer0/Texture.o build/temp.linux-arm64-2.7/layer0/Tracker.o build/temp.linux-arm64-2.7/layer0/Triangle.o build/temp.linux-arm64-2.7/layer0/Util.o build/temp.linux-arm64-2.7/layer0/Util2.o build/temp.linux-arm64-2.7/layer0/Vector.o build/temp.linux-arm64-2.7/layer0/Word.o build/temp.linux-arm64-2.7/layer0/os_gl.o build/temp.linux-arm64-2.7/layer1/Basis.o build/temp.linux-arm64-2.7/layer1/ButMode.o build/temp.linux-arm64-2.7/layer1/CGO.o build/temp.linux-arm64-2.7/layer1/COLLADA.o build/temp.linux-arm64-2.7/layer1/Character.o build/temp.linux-arm64-2.7/layer1/Color.o build/temp.linux-arm64-2.7/layer1/Control.o build/temp.linux-arm64-2.7/layer1/Extrude.o build/temp.linux-arm64-2.7/layer1/Font.o build/temp.linux-arm64-2.7/layer1/FontGLUT.o build/temp.linux-arm64-2.7/layer1/FontGLUT8x13.o build/temp.linux-arm64-2.7/layer1/FontGLUT9x15.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel10.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel12.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel18.o build/temp.linux-arm64-2.7/layer1/FontType.o build/temp.linux-arm64-2.7/layer1/Movie.o build/temp.linux-arm64-2.7/layer1/Ortho.o build/temp.linux-arm64-2.7/layer1/P.o build/temp.linux-arm64-2.7/layer1/PConv.o build/temp.linux-arm64-2.7/layer1/Pop.o build/temp.linux-arm64-2.7/layer1/PyMOLObject.o build/temp.linux-arm64-2.7/layer1/Ray.o build/temp.linux-arm64-2.7/layer1/Rep.o build/temp.linux-arm64-2.7/layer1/Scene.o build/temp.linux-arm64-2.7/layer1/ScenePicking.o build/temp.linux-arm64-2.7/layer1/SceneRay.o build/temp.linux-arm64-2.7/layer1/SceneRender.o build/temp.linux-arm64-2.7/layer1/ScrollBar.o build/temp.linux-arm64-2.7/layer1/Seq.o build/temp.linux-arm64-2.7/layer1/Setting.o build/temp.linux-arm64-2.7/layer1/Shaker.o build/temp.linux-arm64-2.7/layer1/Symmetry.o build/temp.linux-arm64-2.7/layer1/Text.o build/temp.linux-arm64-2.7/layer1/TypeFace.o build/temp.linux-arm64-2.7/layer1/View.o build/temp.linux-arm64-2.7/layer1/Wizard.o build/temp.linux-arm64-2.7/layer2/AssemblyHelpers.o build/temp.linux-arm64-2.7/layer2/AtomInfo.o build/temp.linux-arm64-2.7/layer2/AtomInfoHistory.o build/temp.linux-arm64-2.7/layer2/BondTypeHistory.o build/temp.linux-arm64-2.7/layer2/CifFile.o build/temp.linux-arm64-2.7/layer2/CifMoleculeReader.o build/temp.linux-arm64-2.7/layer2/CoordSet.o build/temp.linux-arm64-2.7/layer2/DistSet.o build/temp.linux-arm64-2.7/layer2/GadgetSet.o build/temp.linux-arm64-2.7/layer2/HydrogenAdder.o build/temp.linux-arm64-2.7/layer2/MmodTyping.o build/temp.linux-arm64-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-arm64-2.7/layer2/Mol2Typing.o build/temp.linux-arm64-2.7/layer2/MolV3000.o build/temp.linux-arm64-2.7/layer2/ObjectAlignment.o build/temp.linux-arm64-2.7/layer2/ObjectCGO.o build/temp.linux-arm64-2.7/layer2/ObjectCallback.o build/temp.linux-arm64-2.7/layer2/ObjectDist.o build/temp.linux-arm64-2.7/layer2/ObjectGadget.o build/temp.linux-arm64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-arm64-2.7/layer2/ObjectGroup.o build/temp.linux-arm64-2.7/layer2/ObjectMap.o build/temp.linux-arm64-2.7/layer2/ObjectMesh.o build/temp.linux-arm64-2.7/layer2/ObjectMolecule.o build/temp.linux-arm64-2.7/layer2/ObjectMolecule2.o build/temp.linux-arm64-2.7/layer2/ObjectSlice.o build/temp.linux-arm64-2.7/layer2/ObjectSurface.o build/temp.linux-arm64-2.7/layer2/ObjectVolume.o build/temp.linux-arm64-2.7/layer2/RepAngle.o build/temp.linux-arm64-2.7/layer2/RepCartoon.o build/temp.linux-arm64-2.7/layer2/RepCylBond.o build/temp.linux-arm64-2.7/layer2/RepDihedral.o build/temp.linux-arm64-2.7/layer2/RepDistDash.o build/temp.linux-arm64-2.7/layer2/RepDistLabel.o build/temp.linux-arm64-2.7/layer2/RepDot.o build/temp.linux-arm64-2.7/layer2/RepEllipsoid.o build/temp.linux-arm64-2.7/layer2/RepLabel.o build/temp.linux-arm64-2.7/layer2/RepMesh.o build/temp.linux-arm64-2.7/layer2/RepNonbonded.o build/temp.linux-arm64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-arm64-2.7/layer2/RepRibbon.o build/temp.linux-arm64-2.7/layer2/RepSphere.o build/temp.linux-arm64-2.7/layer2/RepSphereGenerate.o build/temp.linux-arm64-2.7/layer2/RepSphereImmediate.o build/temp.linux-arm64-2.7/layer2/RepSurface.o build/temp.linux-arm64-2.7/layer2/RepWireBond.o build/temp.linux-arm64-2.7/layer2/Sculpt.o build/temp.linux-arm64-2.7/layer2/SculptCache.o build/temp.linux-arm64-2.7/layer2/SideChainHelper.o build/temp.linux-arm64-2.7/layer2/VFont.o build/temp.linux-arm64-2.7/layer3/AtomIterators.o build/temp.linux-arm64-2.7/layer3/CifDataValueFormatter.o build/temp.linux-arm64-2.7/layer3/Editor.o build/temp.linux-arm64-2.7/layer3/Executive.o build/temp.linux-arm64-2.7/layer3/MaeExportHelpers.o build/temp.linux-arm64-2.7/layer3/MoleculeExporter.o build/temp.linux-arm64-2.7/layer3/MovieScene.o build/temp.linux-arm64-2.7/layer3/PlugIOManager.o build/temp.linux-arm64-2.7/layer3/Seeker.o build/temp.linux-arm64-2.7/layer3/Selector.o build/temp.linux-arm64-2.7/layer4/Cmd.o build/temp.linux-arm64-2.7/layer4/Export.o build/temp.linux-arm64-2.7/layer4/Menu.o build/temp.linux-arm64-2.7/layer4/PopUp.o build/temp.linux-arm64-2.7/layer5/PyMOL.o build/temp.linux-arm64-2.7/layer5/TestPyMOL.o build/temp.linux-arm64-2.7/layer5/main.o build/temp.linux-arm64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-arm64-2.7/ov/src/OVContext.o build/temp.linux-arm64-2.7/ov/src/OVHeap.o build/temp.linux-arm64-2.7/ov/src/OVHeapArray.o build/temp.linux-arm64-2.7/ov/src/OVLexicon.o build/temp.linux-arm64-2.7/ov/src/OVOneToAny.o build/temp.linux-arm64-2.7/ov/src/OVOneToOne.o build/temp.linux-arm64-2.7/ov/src/OVRandom.o build/temp.linux-arm64-2.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-arm64-2.7/contrib/champ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-arm64-2.7/contrib/champ/champ.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-arm64-2.7/contrib/champ/chiral.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-arm64-2.7/contrib/champ/err2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-arm64-2.7/contrib/champ/feedback2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-arm64-2.7/contrib/champ/champ_module.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-arm64-2.7/contrib/champ/list.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-arm64-2.7/contrib/champ/os_memory.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-arm64-2.7/contrib/champ/sort.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:67:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:149:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:162:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-arm64-2.7/contrib/champ/strblock.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-arm64-2.7/contrib/champ/vla.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/contrib/champ/champ.o build/temp.linux-arm64-2.7/contrib/champ/champ_module.o build/temp.linux-arm64-2.7/contrib/champ/chiral.o build/temp.linux-arm64-2.7/contrib/champ/err2.o build/temp.linux-arm64-2.7/contrib/champ/feedback2.o build/temp.linux-arm64-2.7/contrib/champ/list.o build/temp.linux-arm64-2.7/contrib/champ/os_memory.o build/temp.linux-arm64-2.7/contrib/champ/sort.o build/temp.linux-arm64-2.7/contrib/champ/strblock.o build/temp.linux-arm64-2.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so I: pybuild base:217: /usr/bin/python3 setup.py build --pyqt PyQt5 running build running build_py creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/build creating build/temp.linux-arm64-3.7/build/generated creating build/temp.linux-arm64-3.7/contrib creating build/temp.linux-arm64-3.7/contrib/uiuc creating build/temp.linux-arm64-3.7/contrib/uiuc/plugins creating build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-arm64-3.7/layer0 creating build/temp.linux-arm64-3.7/layer1 creating build/temp.linux-arm64-3.7/layer2 creating build/temp.linux-arm64-3.7/layer3 creating build/temp.linux-arm64-3.7/layer4 creating build/temp.linux-arm64-3.7/layer5 creating build/temp.linux-arm64-3.7/modules creating build/temp.linux-arm64-3.7/modules/cealign creating build/temp.linux-arm64-3.7/modules/cealign/src creating build/temp.linux-arm64-3.7/ov creating build/temp.linux-arm64-3.7/ov/src aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c build/generated/ShaderText.cpp -o build/temp.linux-arm64-3.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] sprintf(atom->resname, "%d", resid); ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] sprintf(atom->resname, "%d", resid); ^~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,parm7, ~~~~~~^~~~~~~~~~~~ &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Jparm, &prm->Nparm); ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, ~~~~~~^~~~~~~~~~~~~ &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natyp, &prm->Nphb); ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ~~~~~^~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] sprintf(data->basis_string, "%d-%s%sG%s", ^~ ngauss, (data->gbasis+1), diffuse, ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] sprintf(data->basis_string, "STO-%dG%s%s", ^~ ngauss, diffuse, polarization); ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Box[0], &prm->Box[1], &prm->Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natcap, &prm->Cutcap, ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Xcap, &prm->Ycap, &prm->Zcap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(int), 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (str, len, 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 8, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] strncpy(tmptype, atom->type, sizeof(atom->type)); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Deferred.cpp -o build/temp.linux-arm64-3.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Err.cpp -o build/temp.linux-arm64-3.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Isosurf.cpp -o build/temp.linux-arm64-3.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Feedback.cpp -o build/temp.linux-arm64-3.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Field.cpp -o build/temp.linux-arm64-3.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", ^~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Block.cpp -o build/temp.linux-arm64-3.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Parse.cpp -o build/temp.linux-arm64-3.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Texture.cpp -o build/temp.linux-arm64-3.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); ^~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf(answer, "%03x/%03x/", d1, d2); ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Pixmap.cpp -o build/temp.linux-arm64-3.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(subsub, "%03x", j); ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Queue.cpp -o build/temp.linux-arm64-3.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/File.cpp -o build/temp.linux-arm64-3.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderMgr.cpp -o build/temp.linux-arm64-3.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GenericBuffer.cpp -o build/temp.linux-arm64-3.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/os_gl.cpp -o build/temp.linux-arm64-3.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Crystal.cpp -o build/temp.linux-arm64-3.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Basis.cpp -o build/temp.linux-arm64-3.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ButMode.cpp -o build/temp.linux-arm64-3.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tracker.cpp -o build/temp.linux-arm64-3.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Triangle.cpp -o build/temp.linux-arm64-3.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GraphicsUtil.cpp -o build/temp.linux-arm64-3.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Debug.cpp -o build/temp.linux-arm64-3.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Control.cpp -o build/temp.linux-arm64-3.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel12.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/CGO.cpp -o build/temp.linux-arm64-3.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel18.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontType.cpp -o build/temp.linux-arm64-3.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Map.cpp -o build/temp.linux-arm64-3.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Extrude.cpp -o build/temp.linux-arm64-3.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Movie.cpp -o build/temp.linux-arm64-3.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Match.cpp -o build/temp.linux-arm64-3.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Matrix.cpp -o build/temp.linux-arm64-3.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Pop.cpp -o build/temp.linux-arm64-3.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util.cpp -o build/temp.linux-arm64-3.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PyMOLObject.cpp -o build/temp.linux-arm64-3.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 + min_frame, 1 + max_frame, extra); ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 34 and 1077 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1741:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 989 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mcopy(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1060 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1770:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mdelete(%d,%d%s)", I->DragStartFrame - I->DragCurFrame, first+1, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1766:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.minsert(%d,%d%s)", I->DragCurFrame - I->DragStartFrame, first, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1727:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 990 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mmove(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1059 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util2.cpp -o build/temp.linux-arm64-3.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Font.cpp -o build/temp.linux-arm64-3.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRender.cpp -o build/temp.linux-arm64-3.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Vector.cpp -o build/temp.linux-arm64-3.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ortho.cpp -o build/temp.linux-arm64-3.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ray.cpp -o build/temp.linux-arm64-3.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT8x13.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Word.cpp -o build/temp.linux-arm64-3.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT9x15.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel10.cpp -o build/temp.linux-arm64-3.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderPrg.cpp -o build/temp.linux-arm64-3.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/TypeFace.cpp -o build/temp.linux-arm64-3.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScrollBar.cpp -o build/temp.linux-arm64-3.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/View.cpp -o build/temp.linux-arm64-3.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifFile.cpp -o build/temp.linux-arm64-3.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/P.cpp -o build/temp.linux-arm64-3.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Seq.cpp -o build/temp.linux-arm64-3.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Sphere.cpp -o build/temp.linux-arm64-3.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifMoleculeReader.cpp -o build/temp.linux-arm64-3.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Wizard.cpp -o build/temp.linux-arm64-3.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tetsurf.cpp -o build/temp.linux-arm64-3.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryCache.cpp -o build/temp.linux-arm64-3.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryDebug.cpp -o build/temp.linux-arm64-3.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Setting.cpp -o build/temp.linux-arm64-3.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MyPNG.cpp -o build/temp.linux-arm64-3.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-arm64-3.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] "Transform {\n" ^~~~~~~~~~~~~~~ " translation %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " rotation %8.6f %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " children [\n" ~~~~~~~~~~~~~~~ "%s" ~~~~ " ]\n" ~~~~~~ "}\n", ~~~~~ layer1/Ray.cpp:1558:72: vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Ray.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PConv.cpp -o build/temp.linux-arm64-3.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AssemblyHelpers.cpp -o build/temp.linux-arm64-3.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Mol2Typing.cpp -o build/temp.linux-arm64-3.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MolV3000.cpp -o build/temp.linux-arm64-3.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadget.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfo.cpp -o build/temp.linux-arm64-3.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSlice.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectAlignment.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSurface.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfoHistory.cpp -o build/temp.linux-arm64-3.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCGO.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGroup.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Rep.cpp -o build/temp.linux-arm64-3.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMap.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/BondTypeHistory.cpp -o build/temp.linux-arm64-3.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectVolume.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Scene.cpp -o build/temp.linux-arm64-3.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCallback.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CoordSet.cpp -o build/temp.linux-arm64-3.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistDash.cpp -o build/temp.linux-arm64-3.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectDist.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistLabel.cpp -o build/temp.linux-arm64-3.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepAngle.cpp -o build/temp.linux-arm64-3.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/DistSet.cpp -o build/temp.linux-arm64-3.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-arm64-3.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCartoon.cpp -o build/temp.linux-arm64-3.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDot.cpp -o build/temp.linux-arm64-3.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/COLLADA.cpp -o build/temp.linux-arm64-3.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4103:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3971:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3971:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3988:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3988:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~ layer1/Scene.cpp:3996:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:3996:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024 sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3856:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3856:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3862:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:3862:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3891:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3891:17: note: in expansion of macro 'PRINTF' PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3904:50: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:262:98: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255 #define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; if(Feedback(G,sysmod,mask)) {(snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3904:17: note: in expansion of macro 'PRINTFB' PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~ layer1/Scene.cpp:4162:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4162:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4196:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4196:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4187:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4187:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4247:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4247:31: note: directive argument in the range [-2147483647, 2147483647] layer1/Scene.cpp:4247:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024 sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4218:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.origin(\"%s\")", buf1); ^~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4218:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024 sprintf(buffer, "cmd.origin(\"%s\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4225:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4225:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4312:29: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ^~~~~~~~ layer1/Scene.cpp:4312:22: note: 'sprintf' output 3 or more bytes (assuming 1026) into a destination of size 1024 sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4319:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ layer1/Scene.cpp:4319:26: note: 'sprintf' output 20 or more bytes (assuming 1298) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~~ layer1/Scene.cpp:4294:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4294:22: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4303:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4303:26: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4306:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~ layer1/Scene.cpp:4306:26: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4271:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ^~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:4271:20: note: 'sprintf' output 5 or more bytes (assuming 1028) into a destination of size 1024 sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4282:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~ layer1/Scene.cpp:4282:24: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/GadgetSet.cpp -o build/temp.linux-arm64-3.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepRibbon.cpp -o build/temp.linux-arm64-3.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMesh.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepEllipsoid.cpp -o build/temp.linux-arm64-3.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScenePicking.cpp -o build/temp.linux-arm64-3.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/HydrogenAdder.cpp -o build/temp.linux-arm64-3.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Shaker.cpp -o build/temp.linux-arm64-3.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Character.cpp -o build/temp.linux-arm64-3.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphere.cpp -o build/temp.linux-arm64-3.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmodTyping.cpp -o build/temp.linux-arm64-3.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepLabel.cpp -o build/temp.linux-arm64-3.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRay.cpp -o build/temp.linux-arm64-3.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Symmetry.cpp -o build/temp.linux-arm64-3.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Sculpt.cpp -o build/temp.linux-arm64-3.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Color.cpp -o build/temp.linux-arm64-3.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Text.cpp -o build/temp.linux-arm64-3.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereGenerate.cpp -o build/temp.linux-arm64-3.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Executive.cpp -o build/temp.linux-arm64-3.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepMesh.cpp -o build/temp.linux-arm64-3.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:1543:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCylBond.cpp -o build/temp.linux-arm64-3.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereImmediate.cpp -o build/temp.linux-arm64-3.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 289 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Cmd.cpp -o build/temp.linux-arm64-3.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSurface.cpp -o build/temp.linux-arm64-3.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SculptCache.cpp -o build/temp.linux-arm64-3.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbonded.cpp -o build/temp.linux-arm64-3.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDihedral.cpp -o build/temp.linux-arm64-3.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SideChainHelper.cpp -o build/temp.linux-arm64-3.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:10004:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:9991:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:10016:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] " Unbond: %d bonds removed from model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12098:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12098:17: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:12181:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Getting: %s for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12181:8: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 38 and 556 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12283:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12283:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12302:7: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is not a bond-level setting\n", name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12359:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s unset for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, rec->obj->Name ENDF(G); ~~~~ layer3/Executive.cpp:12359:15: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 44 and 562 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12597:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 296) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12453:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12450:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12450:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12574:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12574:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12567:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12409:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-arm64-3.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12756:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12756:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12791:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12823:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12823:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12815:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12719:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/VFont.cpp -o build/temp.linux-arm64-3.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)': layer3/Executive.cpp:12888:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12888:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12880:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12859:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)': layer3/Executive.cpp:12998:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] " Setting: %s unset for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13017:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)': layer4/Cmd.cpp:7060:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVRandom.cpp -o build/temp.linux-arm64-3.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/ov_utility.cpp -o build/temp.linux-arm64-3.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order_input, (location == -2) ? "upper" : "current"); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 1057 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/AtomIterators.cpp -o build/temp.linux-arm64-3.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer, v[0], v[1], v[2], state + 1, mode, 0); ~~~~~~ layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15053:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15059:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2302:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-arm64-3.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetName(PyMOLGlobals*, const char*, const char*)': layer3/Executive.cpp:3561:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 234 [-Wformat-truncation=] "SetName-Error: name '%s' is a selection keyword.\n", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 48 and 303 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:5242:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Editor.cpp -o build/temp.linux-arm64-3.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)': layer3/Executive.cpp:7616:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 751 and 1008 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 30 and 1310 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:7625:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 19 and 1042 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14718:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=] "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ new_name, name, (int)a, x, y, z ENDFB(G); ~~~~~~~~ layer3/Executive.cpp:14718:21: note: using the range [-2147483648, 2147483647] for directive argument layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 52 or more bytes (assuming 1078) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVContext.cpp -o build/temp.linux-arm64-3.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeap.cpp -o build/temp.linux-arm64-3.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeapArray.cpp -o build/temp.linux-arm64-3.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0); ~~~~ layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 4124 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVLexicon.cpp -o build/temp.linux-arm64-3.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s2, s2); ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 37 and 2083 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Export.cpp -o build/temp.linux-arm64-3.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4238:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4236:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4236:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4225:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4225:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4216:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4216:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4214:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4214:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4203:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4203:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4401:39: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(align_name, "%s_%s_alignment", ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToAny.cpp -o build/temp.linux-arm64-3.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)': layer3/Editor.cpp:1903:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Editor: grabbing (%s).", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 22 and 277 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); ^~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 264 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:340:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] sprintf(buffer, "(bychain %s)", name); ^~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 266 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:342:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] sprintf(buffer, "(byobject %s)", name); ^~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToOne.cpp -o build/temp.linux-arm64-3.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepWireBond.cpp -o build/temp.linux-arm64-3.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule2.cpp -o build/temp.linux-arm64-3.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Menu.cpp -o build/temp.linux-arm64-3.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MaeExportHelpers.cpp -o build/temp.linux-arm64-3.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/PopUp.cpp -o build/temp.linux-arm64-3.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MoleculeExporter.cpp -o build/temp.linux-arm64-3.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/PyMOL.cpp -o build/temp.linux-arm64-3.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 147 and 914 [-Wformat-overflow=] "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/PyMOL.cpp:2856:70: ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer5/PyMOL.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1134) into a destination of size 1025 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MovieScene.cpp -o build/temp.linux-arm64-3.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/TestPyMOL.cpp -o build/temp.linux-arm64-3.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/main.cpp -o build/temp.linux-arm64-3.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *myArgv[8] = {"pymol"}; ^ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/PlugIOManager.cpp -o build/temp.linux-arm64-3.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:17: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Seeker.cpp -o build/temp.linux-arm64-3.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Selector.cpp -o build/temp.linux-arm64-3.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10828:6: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", line ENDFB(G); ^~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10833:4: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s\n", line ENDFB(G); ^~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 1025 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/build/generated/ShaderText.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-arm64-3.7/layer0/Block.o build/temp.linux-arm64-3.7/layer0/Crystal.o build/temp.linux-arm64-3.7/layer0/Debug.o build/temp.linux-arm64-3.7/layer0/Deferred.o build/temp.linux-arm64-3.7/layer0/Err.o build/temp.linux-arm64-3.7/layer0/Feedback.o build/temp.linux-arm64-3.7/layer0/Field.o build/temp.linux-arm64-3.7/layer0/File.o build/temp.linux-arm64-3.7/layer0/GenericBuffer.o build/temp.linux-arm64-3.7/layer0/GraphicsUtil.o build/temp.linux-arm64-3.7/layer0/Isosurf.o build/temp.linux-arm64-3.7/layer0/Map.o build/temp.linux-arm64-3.7/layer0/Match.o build/temp.linux-arm64-3.7/layer0/Matrix.o build/temp.linux-arm64-3.7/layer0/MemoryCache.o build/temp.linux-arm64-3.7/layer0/MemoryDebug.o build/temp.linux-arm64-3.7/layer0/MyPNG.o build/temp.linux-arm64-3.7/layer0/Parse.o build/temp.linux-arm64-3.7/layer0/Pixmap.o build/temp.linux-arm64-3.7/layer0/Queue.o build/temp.linux-arm64-3.7/layer0/ShaderMgr.o build/temp.linux-arm64-3.7/layer0/ShaderPrg.o build/temp.linux-arm64-3.7/layer0/Sphere.o build/temp.linux-arm64-3.7/layer0/Tetsurf.o build/temp.linux-arm64-3.7/layer0/Texture.o build/temp.linux-arm64-3.7/layer0/Tracker.o build/temp.linux-arm64-3.7/layer0/Triangle.o build/temp.linux-arm64-3.7/layer0/Util.o build/temp.linux-arm64-3.7/layer0/Util2.o build/temp.linux-arm64-3.7/layer0/Vector.o build/temp.linux-arm64-3.7/layer0/Word.o build/temp.linux-arm64-3.7/layer0/os_gl.o build/temp.linux-arm64-3.7/layer1/Basis.o build/temp.linux-arm64-3.7/layer1/ButMode.o build/temp.linux-arm64-3.7/layer1/CGO.o build/temp.linux-arm64-3.7/layer1/COLLADA.o build/temp.linux-arm64-3.7/layer1/Character.o build/temp.linux-arm64-3.7/layer1/Color.o build/temp.linux-arm64-3.7/layer1/Control.o build/temp.linux-arm64-3.7/layer1/Extrude.o build/temp.linux-arm64-3.7/layer1/Font.o build/temp.linux-arm64-3.7/layer1/FontGLUT.o build/temp.linux-arm64-3.7/layer1/FontGLUT8x13.o build/temp.linux-arm64-3.7/layer1/FontGLUT9x15.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel10.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel12.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel18.o build/temp.linux-arm64-3.7/layer1/FontType.o build/temp.linux-arm64-3.7/layer1/Movie.o build/temp.linux-arm64-3.7/layer1/Ortho.o build/temp.linux-arm64-3.7/layer1/P.o build/temp.linux-arm64-3.7/layer1/PConv.o build/temp.linux-arm64-3.7/layer1/Pop.o build/temp.linux-arm64-3.7/layer1/PyMOLObject.o build/temp.linux-arm64-3.7/layer1/Ray.o build/temp.linux-arm64-3.7/layer1/Rep.o build/temp.linux-arm64-3.7/layer1/Scene.o build/temp.linux-arm64-3.7/layer1/ScenePicking.o build/temp.linux-arm64-3.7/layer1/SceneRay.o build/temp.linux-arm64-3.7/layer1/SceneRender.o build/temp.linux-arm64-3.7/layer1/ScrollBar.o build/temp.linux-arm64-3.7/layer1/Seq.o build/temp.linux-arm64-3.7/layer1/Setting.o build/temp.linux-arm64-3.7/layer1/Shaker.o build/temp.linux-arm64-3.7/layer1/Symmetry.o build/temp.linux-arm64-3.7/layer1/Text.o build/temp.linux-arm64-3.7/layer1/TypeFace.o build/temp.linux-arm64-3.7/layer1/View.o build/temp.linux-arm64-3.7/layer1/Wizard.o build/temp.linux-arm64-3.7/layer2/AssemblyHelpers.o build/temp.linux-arm64-3.7/layer2/AtomInfo.o build/temp.linux-arm64-3.7/layer2/AtomInfoHistory.o build/temp.linux-arm64-3.7/layer2/BondTypeHistory.o build/temp.linux-arm64-3.7/layer2/CifFile.o build/temp.linux-arm64-3.7/layer2/CifMoleculeReader.o build/temp.linux-arm64-3.7/layer2/CoordSet.o build/temp.linux-arm64-3.7/layer2/DistSet.o build/temp.linux-arm64-3.7/layer2/GadgetSet.o build/temp.linux-arm64-3.7/layer2/HydrogenAdder.o build/temp.linux-arm64-3.7/layer2/MmodTyping.o build/temp.linux-arm64-3.7/layer2/MmtfMoleculeReader.o build/temp.linux-arm64-3.7/layer2/Mol2Typing.o build/temp.linux-arm64-3.7/layer2/MolV3000.o build/temp.linux-arm64-3.7/layer2/ObjectAlignment.o build/temp.linux-arm64-3.7/layer2/ObjectCGO.o build/temp.linux-arm64-3.7/layer2/ObjectCallback.o build/temp.linux-arm64-3.7/layer2/ObjectDist.o build/temp.linux-arm64-3.7/layer2/ObjectGadget.o build/temp.linux-arm64-3.7/layer2/ObjectGadgetRamp.o build/temp.linux-arm64-3.7/layer2/ObjectGroup.o build/temp.linux-arm64-3.7/layer2/ObjectMap.o build/temp.linux-arm64-3.7/layer2/ObjectMesh.o build/temp.linux-arm64-3.7/layer2/ObjectMolecule.o build/temp.linux-arm64-3.7/layer2/ObjectMolecule2.o build/temp.linux-arm64-3.7/layer2/ObjectSlice.o build/temp.linux-arm64-3.7/layer2/ObjectSurface.o build/temp.linux-arm64-3.7/layer2/ObjectVolume.o build/temp.linux-arm64-3.7/layer2/RepAngle.o build/temp.linux-arm64-3.7/layer2/RepCartoon.o build/temp.linux-arm64-3.7/layer2/RepCylBond.o build/temp.linux-arm64-3.7/layer2/RepDihedral.o build/temp.linux-arm64-3.7/layer2/RepDistDash.o build/temp.linux-arm64-3.7/layer2/RepDistLabel.o build/temp.linux-arm64-3.7/layer2/RepDot.o build/temp.linux-arm64-3.7/layer2/RepEllipsoid.o build/temp.linux-arm64-3.7/layer2/RepLabel.o build/temp.linux-arm64-3.7/layer2/RepMesh.o build/temp.linux-arm64-3.7/layer2/RepNonbonded.o build/temp.linux-arm64-3.7/layer2/RepNonbondedSphere.o build/temp.linux-arm64-3.7/layer2/RepRibbon.o build/temp.linux-arm64-3.7/layer2/RepSphere.o build/temp.linux-arm64-3.7/layer2/RepSphereGenerate.o build/temp.linux-arm64-3.7/layer2/RepSphereImmediate.o build/temp.linux-arm64-3.7/layer2/RepSurface.o build/temp.linux-arm64-3.7/layer2/RepWireBond.o build/temp.linux-arm64-3.7/layer2/Sculpt.o build/temp.linux-arm64-3.7/layer2/SculptCache.o build/temp.linux-arm64-3.7/layer2/SideChainHelper.o build/temp.linux-arm64-3.7/layer2/VFont.o build/temp.linux-arm64-3.7/layer3/AtomIterators.o build/temp.linux-arm64-3.7/layer3/CifDataValueFormatter.o build/temp.linux-arm64-3.7/layer3/Editor.o build/temp.linux-arm64-3.7/layer3/Executive.o build/temp.linux-arm64-3.7/layer3/MaeExportHelpers.o build/temp.linux-arm64-3.7/layer3/MoleculeExporter.o build/temp.linux-arm64-3.7/layer3/MovieScene.o build/temp.linux-arm64-3.7/layer3/PlugIOManager.o build/temp.linux-arm64-3.7/layer3/Seeker.o build/temp.linux-arm64-3.7/layer3/Selector.o build/temp.linux-arm64-3.7/layer4/Cmd.o build/temp.linux-arm64-3.7/layer4/Export.o build/temp.linux-arm64-3.7/layer4/Menu.o build/temp.linux-arm64-3.7/layer4/PopUp.o build/temp.linux-arm64-3.7/layer5/PyMOL.o build/temp.linux-arm64-3.7/layer5/TestPyMOL.o build/temp.linux-arm64-3.7/layer5/main.o build/temp.linux-arm64-3.7/modules/cealign/src/ccealignmodule.o build/temp.linux-arm64-3.7/ov/src/OVContext.o build/temp.linux-arm64-3.7/ov/src/OVHeap.o build/temp.linux-arm64-3.7/ov/src/OVHeapArray.o build/temp.linux-arm64-3.7/ov/src/OVLexicon.o build/temp.linux-arm64-3.7/ov/src/OVOneToAny.o build/temp.linux-arm64-3.7/ov/src/OVOneToOne.o build/temp.linux-arm64-3.7/ov/src/OVRandom.o build/temp.linux-arm64-3.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-aarch64-linux-gnu.so building 'chempy.champ._champ' extension creating build/temp.linux-arm64-3.7/contrib/champ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ.c -o build/temp.linux-arm64-3.7/contrib/champ/champ.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/chiral.c -o build/temp.linux-arm64-3.7/contrib/champ/chiral.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ_module.c -o build/temp.linux-arm64-3.7/contrib/champ/champ_module.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/err2.c -o build/temp.linux-arm64-3.7/contrib/champ/err2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/feedback2.c -o build/temp.linux-arm64-3.7/contrib/champ/feedback2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/list.c -o build/temp.linux-arm64-3.7/contrib/champ/list.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/os_memory.c -o build/temp.linux-arm64-3.7/contrib/champ/os_memory.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/sort.c -o build/temp.linux-arm64-3.7/contrib/champ/sort.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:67:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:149:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:162:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/champ.c: In function 'PConvPyObjectToStrMaxClean': contrib/champ/champ.c:1250:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] st = PyString_AsString(object); ^ contrib/champ/champ.c:1255:10: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] st = PyString_AsString(tmp); ^ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/strblock.c -o build/temp.linux-arm64-3.7/contrib/champ/strblock.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/vla.c -o build/temp.linux-arm64-3.7/contrib/champ/vla.o In file included from contrib/champ/champ_module.c:16: contrib/champ/champ_module.c: In function 'list_prepend_pattern_strings': contrib/champ/os_python.h:34:41: warning: passing argument 2 of 'ChampSmiToPat' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] # define PyString_AsString PyUnicode_AsUTF8 contrib/champ/champ_module.c:801:35: note: in expansion of macro 'PyString_AsString' pat_index = ChampSmiToPat(I,PyString_AsString(PyList_GetItem(smi_list,a))); ^~~~~~~~~~~~~~~~~ In file included from contrib/champ/champ_module.c:22: contrib/champ/champ.h:285:35: note: expected 'char *' but argument is of type 'const char *' int ChampSmiToPat(CChamp *I,char *c); ~~~~~~^ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/contrib/champ/champ.o build/temp.linux-arm64-3.7/contrib/champ/champ_module.o build/temp.linux-arm64-3.7/contrib/champ/chiral.o build/temp.linux-arm64-3.7/contrib/champ/err2.o build/temp.linux-arm64-3.7/contrib/champ/feedback2.o build/temp.linux-arm64-3.7/contrib/champ/list.o build/temp.linux-arm64-3.7/contrib/champ/os_memory.o build/temp.linux-arm64-3.7/contrib/champ/sort.o build/temp.linux-arm64-3.7/contrib/champ/strblock.o build/temp.linux-arm64-3.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/pymol-2.2.0+dfsg' chmod +x test/pymol-test PYBUILD_SYSTEM="custom" \ PYBUILD_BEFORE_TEST="cp -r {dir}/test {build_dir}" \ PYBUILD_AFTER_TEST="rm -rf {build_dir}/test" \ PYBUILD_TEST_ARGS="cd {build_dir}/test; PYMOL_PATH={build_dir} ./run" \ dh_auto_test I: pybuild pybuild:272: cp -r /build/pymol-2.2.0+dfsg/test /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build I: pybuild base:217: cd /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/test; PYMOL_PATH=/build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build ./run run_tests: C0001quit... run_tests: C0001quit.log DIFFERS over about 1 lines. run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... run_tests: C0020pdb.pdb is missing. run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... run_tests: C0025mol.log DIFFERS over about 3 lines. run_tests: C0026sdf... run_tests: C0026sdf.log DIFFERS over about 17 lines. run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... run_tests: C0030pkl.pdb is missing. run_tests: C0030pkl.log DIFFERS over about 4 lines. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... run_tests: C0060delete.log DIFFERS over about 19 lines. run_tests: C0070rep... run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. run_tests: C0080create.2.pdb is missing. run_tests: C0080create.1.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... run_tests: C0105names.log DIFFERS over about 27 lines. run_tests: C0106order... run_tests: C0106order.log DIFFERS over about 49 lines. run_tests: C0140iterate... run_tests: C0140iterate.log DIFFERS over about 23 lines. run_tests: C0150alter... run_tests: C0150alter.log DIFFERS over about 11 lines. run_tests: C0150alter.1.pdb is missing. run_tests: C0160get... run_tests: C0160get.log DIFFERS over about 42 lines. run_tests: C0170scene... run_tests: C0170scene.log DIFFERS over about 125 lines. run_tests: C0180embed... run_tests: C0180embed.log DIFFERS over about 45 lines. run_tests: C0181embed... run_tests: C0181embed.log DIFFERS over about 10 lines. run_tests: C0200feedback... run_tests: C0200feedback.log DIFFERS over about 127 lines. run_tests: C0201extend... run_tests: C0201extend.log DIFFERS over about 11 lines. run_tests: C0202help_python... run_tests: C0202help_python.log DIFFERS over about 50 lines. run_tests: C0300session... run_tests: C0300session.log DIFFERS over about 14 lines. run_tests: C0500misc... run_tests: C0500misc.log DIFFERS over about 130 lines. run_tests: C0550pseudo... run_tests: C0550pseudo.log DIFFERS over about 36 lines. run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.F.pdb is missing. run_tests: C0700odd.E.pdb is missing. run_tests: C0700odd.D.pdb is missing. run_tests: C0700odd.C.pdb is missing. run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.A.pdb is missing. run_tests: C0700odd.9.pdb is missing. run_tests: C0700odd.8.pdb is missing. run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.6.pdb is missing. run_tests: C0700odd.5.pdb is missing. run_tests: C0700odd.4.pdb is missing. run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.2.pdb is missing. run_tests: C0700odd.1.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... run_tests: C0800matrices.log DIFFERS over about 141 lines. run_tests: C1000viewing... run_tests: C1000viewing.log DIFFERS over about 264 lines. run_tests: C1010helping... run_tests: C1010helping.log DIFFERS over about 27 lines. run_tests: C1020querying... run_tests: C1020querying.log DIFFERS over about 123 lines. run_tests: C1030selecting... run_tests: C1030selecting.log DIFFERS over about 63 lines. run_tests: C1035wildcards... run_tests: C1035wildcards.log DIFFERS over about 53 lines. run_tests: C1040editing... run_tests: C1040editing.log DIFFERS over about 260 lines. run_tests: C1050fitting... run_tests: C1050fitting.log DIFFERS over about 77 lines. run_tests: C1060controlling... run_tests: C1060controlling.log DIFFERS over about 7 lines. run_tests: C1070exporting... run_tests: C1070exporting.log DIFFERS over about 27 lines. run_tests: C1080isomore... run_tests: C1080isomore.log DIFFERS over about 142 lines. run_tests: C1090coulomb... run_tests: C1090coulomb.log DIFFERS over about 23 lines. run_tests: C1095slice... run_tests: C1095slice.log DIFFERS over about 33 lines. run_tests: C1100do... run_tests: C1100do.log DIFFERS over about 40 lines. run_tests: C1110matrix_mode... run_tests: C1110matrix_mode.log DIFFERS over about 127 lines. run_tests: C1200matrix_maps... run_tests: C1200matrix_maps.log DIFFERS over about 60 lines. run_tests: C1300extras... run_tests: C1300extras.log DIFFERS over about 38 lines. run_tests: C2000returns... run_tests: C2000returns.log DIFFERS over about 121 lines. I: pybuild pybuild:298: rm -rf /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/test I: pybuild pybuild:272: cp -r /build/pymol-2.2.0+dfsg/test /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build I: pybuild base:217: cd /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/test; PYMOL_PATH=/build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build ./run run_tests: C0001quit... run_tests: C0001quit.log DIFFERS over about 1 lines. run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... run_tests: C0020pdb.pdb is missing. run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... run_tests: C0025mol.log DIFFERS over about 3 lines. run_tests: C0026sdf... run_tests: C0026sdf.log DIFFERS over about 17 lines. run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... run_tests: C0030pkl.pdb is missing. run_tests: C0030pkl.log DIFFERS over about 4 lines. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... run_tests: C0060delete.log DIFFERS over about 19 lines. run_tests: C0070rep... run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. run_tests: C0080create.2.pdb is missing. run_tests: C0080create.1.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... run_tests: C0105names.log DIFFERS over about 27 lines. run_tests: C0106order... run_tests: C0106order.log DIFFERS over about 49 lines. run_tests: C0140iterate... run_tests: C0140iterate.log DIFFERS over about 23 lines. run_tests: C0150alter... run_tests: C0150alter.log DIFFERS over about 11 lines. run_tests: C0150alter.1.pdb is missing. run_tests: C0160get... run_tests: C0160get.log DIFFERS over about 42 lines. run_tests: C0170scene... run_tests: C0170scene.log DIFFERS over about 125 lines. run_tests: C0180embed... run_tests: C0180embed.log DIFFERS over about 45 lines. run_tests: C0181embed... run_tests: C0181embed.log DIFFERS over about 10 lines. run_tests: C0200feedback... run_tests: C0200feedback.log DIFFERS over about 127 lines. run_tests: C0201extend... run_tests: C0201extend.log DIFFERS over about 11 lines. run_tests: C0202help_python... run_tests: C0202help_python.log DIFFERS over about 50 lines. run_tests: C0300session... run_tests: C0300session.log DIFFERS over about 14 lines. run_tests: C0500misc... run_tests: C0500misc.log DIFFERS over about 130 lines. run_tests: C0550pseudo... run_tests: C0550pseudo.log DIFFERS over about 36 lines. run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.F.pdb is missing. run_tests: C0700odd.E.pdb is missing. run_tests: C0700odd.D.pdb is missing. run_tests: C0700odd.C.pdb is missing. run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.A.pdb is missing. run_tests: C0700odd.9.pdb is missing. run_tests: C0700odd.8.pdb is missing. run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.6.pdb is missing. run_tests: C0700odd.5.pdb is missing. run_tests: C0700odd.4.pdb is missing. run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.2.pdb is missing. run_tests: C0700odd.1.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... run_tests: C0800matrices.log DIFFERS over about 141 lines. run_tests: C1000viewing... run_tests: C1000viewing.log DIFFERS over about 264 lines. run_tests: C1010helping... run_tests: C1010helping.log DIFFERS over about 27 lines. run_tests: C1020querying... run_tests: C1020querying.log DIFFERS over about 123 lines. run_tests: C1030selecting... run_tests: C1030selecting.log DIFFERS over about 63 lines. run_tests: C1035wildcards... run_tests: C1035wildcards.log DIFFERS over about 53 lines. run_tests: C1040editing... run_tests: C1040editing.log DIFFERS over about 260 lines. run_tests: C1050fitting... run_tests: C1050fitting.log DIFFERS over about 77 lines. run_tests: C1060controlling... run_tests: C1060controlling.log DIFFERS over about 7 lines. run_tests: C1070exporting... run_tests: C1070exporting.log DIFFERS over about 27 lines. run_tests: C1080isomore... run_tests: C1080isomore.log DIFFERS over about 142 lines. run_tests: C1090coulomb... run_tests: C1090coulomb.log DIFFERS over about 23 lines. run_tests: C1095slice... run_tests: C1095slice.log DIFFERS over about 33 lines. run_tests: C1100do... run_tests: C1100do.log DIFFERS over about 40 lines. run_tests: C1110matrix_mode... run_tests: C1110matrix_mode.log DIFFERS over about 127 lines. run_tests: C1200matrix_maps... run_tests: C1200matrix_maps.log DIFFERS over about 60 lines. run_tests: C1300extras... run_tests: C1300extras.log DIFFERS over about 38 lines. run_tests: C2000returns... run_tests: C2000returns.log DIFFERS over about 121 lines. I: pybuild pybuild:298: rm -rf /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/test make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/pymol-2.2.0+dfsg/debian/python-pymol running install running build running build_py running build_ext building 'pymol._cmd' extension aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-arm64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/build/generated/ShaderText.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-arm64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-arm64-2.7/layer0/Block.o build/temp.linux-arm64-2.7/layer0/Crystal.o build/temp.linux-arm64-2.7/layer0/Debug.o build/temp.linux-arm64-2.7/layer0/Deferred.o build/temp.linux-arm64-2.7/layer0/Err.o build/temp.linux-arm64-2.7/layer0/Feedback.o build/temp.linux-arm64-2.7/layer0/Field.o build/temp.linux-arm64-2.7/layer0/File.o build/temp.linux-arm64-2.7/layer0/GenericBuffer.o build/temp.linux-arm64-2.7/layer0/GraphicsUtil.o build/temp.linux-arm64-2.7/layer0/Isosurf.o build/temp.linux-arm64-2.7/layer0/Map.o build/temp.linux-arm64-2.7/layer0/Match.o build/temp.linux-arm64-2.7/layer0/Matrix.o build/temp.linux-arm64-2.7/layer0/MemoryCache.o build/temp.linux-arm64-2.7/layer0/MemoryDebug.o build/temp.linux-arm64-2.7/layer0/MyPNG.o build/temp.linux-arm64-2.7/layer0/Parse.o build/temp.linux-arm64-2.7/layer0/Pixmap.o build/temp.linux-arm64-2.7/layer0/Queue.o build/temp.linux-arm64-2.7/layer0/ShaderMgr.o build/temp.linux-arm64-2.7/layer0/ShaderPrg.o build/temp.linux-arm64-2.7/layer0/Sphere.o build/temp.linux-arm64-2.7/layer0/Tetsurf.o build/temp.linux-arm64-2.7/layer0/Texture.o build/temp.linux-arm64-2.7/layer0/Tracker.o build/temp.linux-arm64-2.7/layer0/Triangle.o build/temp.linux-arm64-2.7/layer0/Util.o build/temp.linux-arm64-2.7/layer0/Util2.o build/temp.linux-arm64-2.7/layer0/Vector.o build/temp.linux-arm64-2.7/layer0/Word.o build/temp.linux-arm64-2.7/layer0/os_gl.o build/temp.linux-arm64-2.7/layer1/Basis.o build/temp.linux-arm64-2.7/layer1/ButMode.o build/temp.linux-arm64-2.7/layer1/CGO.o build/temp.linux-arm64-2.7/layer1/COLLADA.o build/temp.linux-arm64-2.7/layer1/Character.o build/temp.linux-arm64-2.7/layer1/Color.o build/temp.linux-arm64-2.7/layer1/Control.o build/temp.linux-arm64-2.7/layer1/Extrude.o build/temp.linux-arm64-2.7/layer1/Font.o build/temp.linux-arm64-2.7/layer1/FontGLUT.o build/temp.linux-arm64-2.7/layer1/FontGLUT8x13.o build/temp.linux-arm64-2.7/layer1/FontGLUT9x15.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel10.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel12.o build/temp.linux-arm64-2.7/layer1/FontGLUTHel18.o build/temp.linux-arm64-2.7/layer1/FontType.o build/temp.linux-arm64-2.7/layer1/Movie.o build/temp.linux-arm64-2.7/layer1/Ortho.o build/temp.linux-arm64-2.7/layer1/P.o build/temp.linux-arm64-2.7/layer1/PConv.o build/temp.linux-arm64-2.7/layer1/Pop.o build/temp.linux-arm64-2.7/layer1/PyMOLObject.o build/temp.linux-arm64-2.7/layer1/Ray.o build/temp.linux-arm64-2.7/layer1/Rep.o build/temp.linux-arm64-2.7/layer1/Scene.o build/temp.linux-arm64-2.7/layer1/ScenePicking.o build/temp.linux-arm64-2.7/layer1/SceneRay.o build/temp.linux-arm64-2.7/layer1/SceneRender.o build/temp.linux-arm64-2.7/layer1/ScrollBar.o build/temp.linux-arm64-2.7/layer1/Seq.o build/temp.linux-arm64-2.7/layer1/Setting.o build/temp.linux-arm64-2.7/layer1/Shaker.o build/temp.linux-arm64-2.7/layer1/Symmetry.o build/temp.linux-arm64-2.7/layer1/Text.o build/temp.linux-arm64-2.7/layer1/TypeFace.o build/temp.linux-arm64-2.7/layer1/View.o build/temp.linux-arm64-2.7/layer1/Wizard.o build/temp.linux-arm64-2.7/layer2/AssemblyHelpers.o build/temp.linux-arm64-2.7/layer2/AtomInfo.o build/temp.linux-arm64-2.7/layer2/AtomInfoHistory.o build/temp.linux-arm64-2.7/layer2/BondTypeHistory.o build/temp.linux-arm64-2.7/layer2/CifFile.o build/temp.linux-arm64-2.7/layer2/CifMoleculeReader.o build/temp.linux-arm64-2.7/layer2/CoordSet.o build/temp.linux-arm64-2.7/layer2/DistSet.o build/temp.linux-arm64-2.7/layer2/GadgetSet.o build/temp.linux-arm64-2.7/layer2/HydrogenAdder.o build/temp.linux-arm64-2.7/layer2/MmodTyping.o build/temp.linux-arm64-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-arm64-2.7/layer2/Mol2Typing.o build/temp.linux-arm64-2.7/layer2/MolV3000.o build/temp.linux-arm64-2.7/layer2/ObjectAlignment.o build/temp.linux-arm64-2.7/layer2/ObjectCGO.o build/temp.linux-arm64-2.7/layer2/ObjectCallback.o build/temp.linux-arm64-2.7/layer2/ObjectDist.o build/temp.linux-arm64-2.7/layer2/ObjectGadget.o build/temp.linux-arm64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-arm64-2.7/layer2/ObjectGroup.o build/temp.linux-arm64-2.7/layer2/ObjectMap.o build/temp.linux-arm64-2.7/layer2/ObjectMesh.o build/temp.linux-arm64-2.7/layer2/ObjectMolecule.o build/temp.linux-arm64-2.7/layer2/ObjectMolecule2.o build/temp.linux-arm64-2.7/layer2/ObjectSlice.o build/temp.linux-arm64-2.7/layer2/ObjectSurface.o build/temp.linux-arm64-2.7/layer2/ObjectVolume.o build/temp.linux-arm64-2.7/layer2/RepAngle.o build/temp.linux-arm64-2.7/layer2/RepCartoon.o build/temp.linux-arm64-2.7/layer2/RepCylBond.o build/temp.linux-arm64-2.7/layer2/RepDihedral.o build/temp.linux-arm64-2.7/layer2/RepDistDash.o build/temp.linux-arm64-2.7/layer2/RepDistLabel.o build/temp.linux-arm64-2.7/layer2/RepDot.o build/temp.linux-arm64-2.7/layer2/RepEllipsoid.o build/temp.linux-arm64-2.7/layer2/RepLabel.o build/temp.linux-arm64-2.7/layer2/RepMesh.o build/temp.linux-arm64-2.7/layer2/RepNonbonded.o build/temp.linux-arm64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-arm64-2.7/layer2/RepRibbon.o build/temp.linux-arm64-2.7/layer2/RepSphere.o build/temp.linux-arm64-2.7/layer2/RepSphereGenerate.o build/temp.linux-arm64-2.7/layer2/RepSphereImmediate.o build/temp.linux-arm64-2.7/layer2/RepSurface.o build/temp.linux-arm64-2.7/layer2/RepWireBond.o build/temp.linux-arm64-2.7/layer2/Sculpt.o build/temp.linux-arm64-2.7/layer2/SculptCache.o build/temp.linux-arm64-2.7/layer2/SideChainHelper.o build/temp.linux-arm64-2.7/layer2/VFont.o build/temp.linux-arm64-2.7/layer3/AtomIterators.o build/temp.linux-arm64-2.7/layer3/CifDataValueFormatter.o build/temp.linux-arm64-2.7/layer3/Editor.o build/temp.linux-arm64-2.7/layer3/Executive.o build/temp.linux-arm64-2.7/layer3/MaeExportHelpers.o build/temp.linux-arm64-2.7/layer3/MoleculeExporter.o build/temp.linux-arm64-2.7/layer3/MovieScene.o build/temp.linux-arm64-2.7/layer3/PlugIOManager.o build/temp.linux-arm64-2.7/layer3/Seeker.o build/temp.linux-arm64-2.7/layer3/Selector.o build/temp.linux-arm64-2.7/layer4/Cmd.o build/temp.linux-arm64-2.7/layer4/Export.o build/temp.linux-arm64-2.7/layer4/Menu.o build/temp.linux-arm64-2.7/layer4/PopUp.o build/temp.linux-arm64-2.7/layer5/PyMOL.o build/temp.linux-arm64-2.7/layer5/TestPyMOL.o build/temp.linux-arm64-2.7/layer5/main.o build/temp.linux-arm64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-arm64-2.7/ov/src/OVContext.o build/temp.linux-arm64-2.7/ov/src/OVHeap.o build/temp.linux-arm64-2.7/ov/src/OVHeapArray.o build/temp.linux-arm64-2.7/ov/src/OVLexicon.o build/temp.linux-arm64-2.7/ov/src/OVOneToAny.o build/temp.linux-arm64-2.7/ov/src/OVOneToOne.o build/temp.linux-arm64-2.7/ov/src/OVRandom.o build/temp.linux-arm64-2.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so running install_lib creating /build/pymol-2.2.0+dfsg/debian/python-pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/builder.py to builder.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/keymapping.py to keymapping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/volume.py to volume.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pml.py to pml.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/python.py to python.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/volume.py to volume.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/arc.py to arc.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bonds.py to bonds.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/brick.py to brick.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cc1.py to cc1.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cex.py to cex.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/charge.py to charge.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cif.py to cif.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cpv.py to cpv.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gms.py to gms.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/io.py to io.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/lst.py to lst.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mae.py to mae.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/map.py to map.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mass.py to mass.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmd.py to mmd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/models.py to models.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol.py to mol.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol2.py to mol2.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pdb.py to pdb.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pkl.py to pkl.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/sdf.py to sdf.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/solvate.py to solvate.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/xyz.py to xyz.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein.py to protein.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/place.py to place.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/state.py to state.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/assign.py to assign.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/io.py to io.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/state.py to state.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__main__.py to __main__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/_gui.py to _gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/api.py to api.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/callback.py to callback.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cgo.py to cgo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/checking.py to checking.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cmd.py to cmd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorprinting.py to colorprinting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/commanding.py to commanding.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/completing.py to completing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/computing.py to computing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants.py to constants.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/controlling.py to controlling.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/creating.py to creating.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/diagnosing.py to diagnosing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editor.py to editor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/exporting.py to exporting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/externing.py to externing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/fitting.py to fitting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/gui.py to gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/headering.py to headering.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/helping.py to helping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/importing.py to importing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/internal.py to internal.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/invocation.py to invocation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keywords.py to keywords.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/lazyio.py to lazyio.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/locking.py to locking.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/m4x.py to m4x.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/menu.py to menu.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/morphing.py to morphing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/movie.py to movie.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/moving.py to moving.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parser.py to parser.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parsing.py to parsing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/preset.py to preset.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/querying.py to querying.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/rpc.py to rpc.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selecting.py to selecting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selector.py to selector.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/setting.py to setting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/vfont.py to vfont.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/viewing.py to viewing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xray.py to xray.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xwin.py to xwin.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/povray.py to povray.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editing.py to editing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/box.py to box.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/command.py to command.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/density.py to density.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/label.py to label.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/message.py to message.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/security.py to security.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/utils.py to utils.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/bin I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/pymol-2.2.0+dfsg/debian/python3-pymol running install running build running build_py running build_ext building 'pymol._cmd' extension aarch64-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c build/generated/ShaderText.cpp -o build/temp.linux-arm64-3.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/build/generated/ShaderText.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-arm64-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-arm64-3.7/layer0/Block.o build/temp.linux-arm64-3.7/layer0/Crystal.o build/temp.linux-arm64-3.7/layer0/Debug.o build/temp.linux-arm64-3.7/layer0/Deferred.o build/temp.linux-arm64-3.7/layer0/Err.o build/temp.linux-arm64-3.7/layer0/Feedback.o build/temp.linux-arm64-3.7/layer0/Field.o build/temp.linux-arm64-3.7/layer0/File.o build/temp.linux-arm64-3.7/layer0/GenericBuffer.o build/temp.linux-arm64-3.7/layer0/GraphicsUtil.o build/temp.linux-arm64-3.7/layer0/Isosurf.o build/temp.linux-arm64-3.7/layer0/Map.o build/temp.linux-arm64-3.7/layer0/Match.o build/temp.linux-arm64-3.7/layer0/Matrix.o build/temp.linux-arm64-3.7/layer0/MemoryCache.o build/temp.linux-arm64-3.7/layer0/MemoryDebug.o build/temp.linux-arm64-3.7/layer0/MyPNG.o build/temp.linux-arm64-3.7/layer0/Parse.o build/temp.linux-arm64-3.7/layer0/Pixmap.o build/temp.linux-arm64-3.7/layer0/Queue.o build/temp.linux-arm64-3.7/layer0/ShaderMgr.o build/temp.linux-arm64-3.7/layer0/ShaderPrg.o build/temp.linux-arm64-3.7/layer0/Sphere.o build/temp.linux-arm64-3.7/layer0/Tetsurf.o build/temp.linux-arm64-3.7/layer0/Texture.o build/temp.linux-arm64-3.7/layer0/Tracker.o build/temp.linux-arm64-3.7/layer0/Triangle.o build/temp.linux-arm64-3.7/layer0/Util.o build/temp.linux-arm64-3.7/layer0/Util2.o build/temp.linux-arm64-3.7/layer0/Vector.o build/temp.linux-arm64-3.7/layer0/Word.o build/temp.linux-arm64-3.7/layer0/os_gl.o build/temp.linux-arm64-3.7/layer1/Basis.o build/temp.linux-arm64-3.7/layer1/ButMode.o build/temp.linux-arm64-3.7/layer1/CGO.o build/temp.linux-arm64-3.7/layer1/COLLADA.o build/temp.linux-arm64-3.7/layer1/Character.o build/temp.linux-arm64-3.7/layer1/Color.o build/temp.linux-arm64-3.7/layer1/Control.o build/temp.linux-arm64-3.7/layer1/Extrude.o build/temp.linux-arm64-3.7/layer1/Font.o build/temp.linux-arm64-3.7/layer1/FontGLUT.o build/temp.linux-arm64-3.7/layer1/FontGLUT8x13.o build/temp.linux-arm64-3.7/layer1/FontGLUT9x15.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel10.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel12.o build/temp.linux-arm64-3.7/layer1/FontGLUTHel18.o build/temp.linux-arm64-3.7/layer1/FontType.o build/temp.linux-arm64-3.7/layer1/Movie.o build/temp.linux-arm64-3.7/layer1/Ortho.o build/temp.linux-arm64-3.7/layer1/P.o build/temp.linux-arm64-3.7/layer1/PConv.o build/temp.linux-arm64-3.7/layer1/Pop.o build/temp.linux-arm64-3.7/layer1/PyMOLObject.o build/temp.linux-arm64-3.7/layer1/Ray.o build/temp.linux-arm64-3.7/layer1/Rep.o build/temp.linux-arm64-3.7/layer1/Scene.o build/temp.linux-arm64-3.7/layer1/ScenePicking.o build/temp.linux-arm64-3.7/layer1/SceneRay.o build/temp.linux-arm64-3.7/layer1/SceneRender.o build/temp.linux-arm64-3.7/layer1/ScrollBar.o build/temp.linux-arm64-3.7/layer1/Seq.o build/temp.linux-arm64-3.7/layer1/Setting.o build/temp.linux-arm64-3.7/layer1/Shaker.o build/temp.linux-arm64-3.7/layer1/Symmetry.o build/temp.linux-arm64-3.7/layer1/Text.o build/temp.linux-arm64-3.7/layer1/TypeFace.o build/temp.linux-arm64-3.7/layer1/View.o build/temp.linux-arm64-3.7/layer1/Wizard.o build/temp.linux-arm64-3.7/layer2/AssemblyHelpers.o build/temp.linux-arm64-3.7/layer2/AtomInfo.o build/temp.linux-arm64-3.7/layer2/AtomInfoHistory.o build/temp.linux-arm64-3.7/layer2/BondTypeHistory.o build/temp.linux-arm64-3.7/layer2/CifFile.o build/temp.linux-arm64-3.7/layer2/CifMoleculeReader.o build/temp.linux-arm64-3.7/layer2/CoordSet.o build/temp.linux-arm64-3.7/layer2/DistSet.o build/temp.linux-arm64-3.7/layer2/GadgetSet.o build/temp.linux-arm64-3.7/layer2/HydrogenAdder.o build/temp.linux-arm64-3.7/layer2/MmodTyping.o build/temp.linux-arm64-3.7/layer2/MmtfMoleculeReader.o build/temp.linux-arm64-3.7/layer2/Mol2Typing.o build/temp.linux-arm64-3.7/layer2/MolV3000.o build/temp.linux-arm64-3.7/layer2/ObjectAlignment.o build/temp.linux-arm64-3.7/layer2/ObjectCGO.o build/temp.linux-arm64-3.7/layer2/ObjectCallback.o build/temp.linux-arm64-3.7/layer2/ObjectDist.o build/temp.linux-arm64-3.7/layer2/ObjectGadget.o build/temp.linux-arm64-3.7/layer2/ObjectGadgetRamp.o build/temp.linux-arm64-3.7/layer2/ObjectGroup.o build/temp.linux-arm64-3.7/layer2/ObjectMap.o build/temp.linux-arm64-3.7/layer2/ObjectMesh.o build/temp.linux-arm64-3.7/layer2/ObjectMolecule.o build/temp.linux-arm64-3.7/layer2/ObjectMolecule2.o build/temp.linux-arm64-3.7/layer2/ObjectSlice.o build/temp.linux-arm64-3.7/layer2/ObjectSurface.o build/temp.linux-arm64-3.7/layer2/ObjectVolume.o build/temp.linux-arm64-3.7/layer2/RepAngle.o build/temp.linux-arm64-3.7/layer2/RepCartoon.o build/temp.linux-arm64-3.7/layer2/RepCylBond.o build/temp.linux-arm64-3.7/layer2/RepDihedral.o build/temp.linux-arm64-3.7/layer2/RepDistDash.o build/temp.linux-arm64-3.7/layer2/RepDistLabel.o build/temp.linux-arm64-3.7/layer2/RepDot.o build/temp.linux-arm64-3.7/layer2/RepEllipsoid.o build/temp.linux-arm64-3.7/layer2/RepLabel.o build/temp.linux-arm64-3.7/layer2/RepMesh.o build/temp.linux-arm64-3.7/layer2/RepNonbonded.o build/temp.linux-arm64-3.7/layer2/RepNonbondedSphere.o build/temp.linux-arm64-3.7/layer2/RepRibbon.o build/temp.linux-arm64-3.7/layer2/RepSphere.o build/temp.linux-arm64-3.7/layer2/RepSphereGenerate.o build/temp.linux-arm64-3.7/layer2/RepSphereImmediate.o build/temp.linux-arm64-3.7/layer2/RepSurface.o build/temp.linux-arm64-3.7/layer2/RepWireBond.o build/temp.linux-arm64-3.7/layer2/Sculpt.o build/temp.linux-arm64-3.7/layer2/SculptCache.o build/temp.linux-arm64-3.7/layer2/SideChainHelper.o build/temp.linux-arm64-3.7/layer2/VFont.o build/temp.linux-arm64-3.7/layer3/AtomIterators.o build/temp.linux-arm64-3.7/layer3/CifDataValueFormatter.o build/temp.linux-arm64-3.7/layer3/Editor.o build/temp.linux-arm64-3.7/layer3/Executive.o build/temp.linux-arm64-3.7/layer3/MaeExportHelpers.o build/temp.linux-arm64-3.7/layer3/MoleculeExporter.o build/temp.linux-arm64-3.7/layer3/MovieScene.o build/temp.linux-arm64-3.7/layer3/PlugIOManager.o build/temp.linux-arm64-3.7/layer3/Seeker.o build/temp.linux-arm64-3.7/layer3/Selector.o build/temp.linux-arm64-3.7/layer4/Cmd.o build/temp.linux-arm64-3.7/layer4/Export.o build/temp.linux-arm64-3.7/layer4/Menu.o build/temp.linux-arm64-3.7/layer4/PopUp.o build/temp.linux-arm64-3.7/layer5/PyMOL.o build/temp.linux-arm64-3.7/layer5/TestPyMOL.o build/temp.linux-arm64-3.7/layer5/main.o build/temp.linux-arm64-3.7/modules/cealign/src/ccealignmodule.o build/temp.linux-arm64-3.7/ov/src/OVContext.o build/temp.linux-arm64-3.7/ov/src/OVHeap.o build/temp.linux-arm64-3.7/ov/src/OVHeapArray.o build/temp.linux-arm64-3.7/ov/src/OVLexicon.o build/temp.linux-arm64-3.7/ov/src/OVOneToAny.o build/temp.linux-arm64-3.7/ov/src/OVOneToOne.o build/temp.linux-arm64-3.7/ov/src/OVRandom.o build/temp.linux-arm64-3.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-aarch64-linux-gnu.so running install_lib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7 creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-aarch64-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-aarch64-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/commands.py to commands.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/realtime.py to realtime.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/state.py to state.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/amber99.py to amber99.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/assign.py to assign.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/io.py to io.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/amber.py to amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/keyword.py to keyword.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/realtime.py to realtime.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/state.py to state.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/arc.py to arc.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_amber.py to bond_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bonds.py to bonds.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/brick.py to brick.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cc1.py to cc1.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cex.py to cex.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/charge.py to charge.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cif.py to cif.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cpv.py to cpv.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/dictdb.py to dictdb.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gamess1.py to gamess1.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gms.py to gms.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/io.py to io.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/lst.py to lst.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mae.py to mae.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/map.py to map.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mass.py to mass.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmd.py to mmd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/models.py to models.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol.py to mol.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol2.py to mol2.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/neighbor.py to neighbor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pdb.py to pdb.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pkl.py to pkl.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber.py to protein_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_residues.py to protein_residues.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/sdf.py to sdf.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/solvate.py to solvate.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_amber.py to water_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_residues.py to water_residues.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/xyz.py to xyz.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/hetatm.py to hetatm.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein.py to protein.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/place.py to place.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/python.py to python.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/builder.py to builder.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/volume.py to volume.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Demo.py to Demo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Setting.py to Setting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/volume.py to volume.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/utils.py to utils.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/installation.py to installation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui.py to managergui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/repository.py to repository.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/annotation.py to annotation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/appearance.py to appearance.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/box.py to box.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/charge.py to charge.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/command.py to command.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/demo.py to demo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/density.py to density.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/distance.py to distance.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/dragging.py to dragging.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/fedora.py to fedora.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/filter.py to filter.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/label.py to label.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/measurement.py to measurement.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/message.py to message.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/renaming.py to renaming.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/security.py to security.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/toggle.py to toggle.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__main__.py to __main__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/_gui.py to _gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/api.py to api.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/callback.py to callback.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cgo.py to cgo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/checking.py to checking.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cmd.py to cmd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorprinting.py to colorprinting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorramping.py to colorramping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/commanding.py to commanding.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/completing.py to completing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/computing.py to computing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants.py to constants.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants_palette.py to constants_palette.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/controlling.py to controlling.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/creating.py to creating.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/diagnosing.py to diagnosing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editor.py to editor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/experimenting.py to experimenting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/exporting.py to exporting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/externing.py to externing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/feedingback.py to feedingback.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/fitting.py to fitting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/gui.py to gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/headering.py to headering.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/helping.py to helping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/importing.py to importing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/internal.py to internal.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/invocation.py to invocation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keyboard.py to keyboard.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keywords.py to keywords.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/lazyio.py to lazyio.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/locking.py to locking.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/m4x.py to m4x.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/menu.py to menu.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/monitoring.py to monitoring.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/morphing.py to morphing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/movie.py to movie.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/moving.py to moving.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parser.py to parser.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parsing.py to parsing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/preset.py to preset.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/querying.py to querying.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/rpc.py to rpc.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selecting.py to selecting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selector.py to selector.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/setting.py to setting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/shortcut.py to shortcut.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/vfont.py to vfont.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/viewing.py to viewing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizarding.py to wizarding.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xray.py to xray.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xwin.py to xwin.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/povray.py to povray.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editing.py to editing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/cmd2.py to cmd2.cpython-37.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-arch make[1]: Entering directory '/build/pymol-2.2.0+dfsg' dh_numpy dh_numpy3 dh_install rm -rf debian/python*pymol/usr/bin make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/pymol-2.2.0+dfsg' sed -e s/@PYTHON_VERSION@/3/g < debian/pymol.launch.in > debian/pymol.launch pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] (debian/pymol-ref-card.aux) ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 107913 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 fs:343: renaming _cmd.so to _cmd.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _champ.so to _champ.aarch64-linux-gnu.so dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installmime -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/pymol-2.2.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pymol' in '../pymol_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python-pymol' in '../python-pymol_2.2.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'python-pymol-dbgsym' in '../python-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.2.0+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pymol_2.2.0+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19815 and its subdirectories I: Current time: Thu Aug 13 18:25:14 -12 2020 I: pbuilder-time-stamp: 1597386314 Fri Aug 14 06:25:22 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled15-arm64.debian.net. Fri Aug 14 06:25:22 UTC 2020 I: Preparing to do remote build '2' on codethink-sled15-arm64.debian.net. Fri Aug 14 06:38:20 UTC 2020 I: Deleting $TMPDIR on codethink-sled15-arm64.debian.net. Fri Aug 14 06:38:21 UTC 2020 I: pymol_2.2.0+dfsg-4_arm64.changes: Format: 1.8 Date: Wed, 02 Jan 2019 12:15:06 +1100 Source: pymol Binary: pymol pymol-data python-pymol python-pymol-dbgsym python3-pymol python3-pymol-dbgsym Architecture: all arm64 Version: 2.2.0+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Stuart Prescott Description: pymol - Molecular Graphics System pymol-data - data files for PyMOL python-pymol - Molecular Graphics System (Python 2 modules) python3-pymol - Molecular Graphics System (Python 3 modules) Changes: pymol (2.2.0+dfsg-4) unstable; urgency=medium . * Team Upload. * Ensure that arch:all package can be built separately. * Switch the pymol binary package to be arch:all following the split of the python modules off to their own packages. Checksums-Sha1: 0b62112b89104f32a62cb32b54e5420aa1400944 1336352 pymol-data_2.2.0+dfsg-4_all.deb ca15cc0a4aeb48dad92d228adb4839b053028341 188348 pymol_2.2.0+dfsg-4_all.deb 0f93178d6043545d1160b5bb32229e59807631fa 13831 pymol_2.2.0+dfsg-4_arm64.buildinfo 24698de7feefafd5897bfc8941290e919b26046a 23248592 python-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb b42dd83ddb608ece60b288474b7977eb7be5b3da 3694708 python-pymol_2.2.0+dfsg-4_arm64.deb 4cbb74afa144fe7f006e101da8fd16089a3e47f4 23377484 python3-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb f51b63396f8ea200975cdd0283f502c3c115ddf1 3697960 python3-pymol_2.2.0+dfsg-4_arm64.deb Checksums-Sha256: fdafa06c30e5cfbf8667430149600e803d60f03b7ec10fab2131d3ced33264cc 1336352 pymol-data_2.2.0+dfsg-4_all.deb ec6ba37582fce9d519d0dd45400810ecb8471c8339bdd1fee055566a22061f54 188348 pymol_2.2.0+dfsg-4_all.deb b031be0aa693ccedc45dac182f2eebced5fe69b06a90ac240f74e82dadd692f7 13831 pymol_2.2.0+dfsg-4_arm64.buildinfo b33f2470598de5a69b64a7e3e5c57a747873127c8e5e5f66ebe1144efecc5207 23248592 python-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb 9e24bc3eabe12818310601e2dd4031cbc97aeaebfcc38878a15b96c1f5485b58 3694708 python-pymol_2.2.0+dfsg-4_arm64.deb 4832db36e57a86df6e821c05cc251e5a7ebcc4818bdbb26e8d0168dc9e072d99 23377484 python3-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb 548868e441e95cc64ec8dc374da2f7aa76fbd6aafb0220838c5ca2d35774e92c 3697960 python3-pymol_2.2.0+dfsg-4_arm64.deb Files: ffcca301dd9293ed0939fe6a094e4776 1336352 science optional pymol-data_2.2.0+dfsg-4_all.deb 7d9b1001ac222c382c12a23bcc38c834 188348 science optional pymol_2.2.0+dfsg-4_all.deb 7c5ab47e541953cad8e7c95e1117c7ea 13831 science optional pymol_2.2.0+dfsg-4_arm64.buildinfo d32b64bae7cc7e4b7f0b736ff18c4dc0 23248592 debug optional python-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb d32c003877af1f7cd454ed1606b123ae 3694708 python optional python-pymol_2.2.0+dfsg-4_arm64.deb 57b94a54104238bbf75535611ae25bbe 23377484 debug optional python3-pymol-dbgsym_2.2.0+dfsg-4_arm64.deb dbc150c88f6b851adf167ec01a5b6a2c 3697960 python optional python3-pymol_2.2.0+dfsg-4_arm64.deb Fri Aug 14 06:38:22 UTC 2020 I: diffoscope 155 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/pymol_2.2.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/pymol_2.2.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/pymol_2.2.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/b1/pymol_2.2.0+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.v2C8suADKa/b2/pymol_2.2.0+dfsg-4_arm64.changes ## close_archive (total time: 0.001s) 0.001s 40 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 28 calls diffoscope.comparators.tar.TarContainer 0.000s 20 calls diffoscope.comparators.deb.DebContainer ## command (total time: 2572.049s) 1331.071s 1943 calls readelf 1021.695s 283 calls diff 188.614s 330 calls objdump 15.782s 40 calls xz 11.861s 4 calls objcopy 2.806s 44 calls strings 0.217s 20 calls cmp 0.003s 31 calls cmp (internal) ## compare_files (cumulative) (total time: 6556.465s) 1269.146s 1 call abc.DotChangesFile 1268.837s 4 calls abc.DebFile 1267.982s 8 calls abc.XzFile 1258.336s 4 calls abc.DebDataTarFile 1252.774s 4 calls abc.ElfFile 207.125s 16 calls diffoscope.comparators.elf.ElfCodeSection 28.172s 66 calls diffoscope.comparators.elf.ElfSection 3.322s 4 calls diffoscope.comparators.elf.ElfStringSection 0.524s 4 calls abc.TarFile 0.087s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.082s 2 calls abc.TextFile 0.078s 4 calls abc.Md5sumsFile ## container_extract (total time: 17.786s) 15.788s 40 calls diffoscope.comparators.xz.XzContainer 1.082s 872 calls diffoscope.comparators.deb.DebTarContainer 0.888s 48 calls diffoscope.comparators.deb.DebContainer 0.029s 44 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.229s) 0.066s 8 calls abc.XzFile 0.056s 6 calls abc.DebFile 0.052s 4 calls abc.DebDataTarFile 0.048s 4 calls abc.ElfFile 0.002s 8 calls abc.Md5sumsFile 0.002s 12 calls abc.TextFile 0.001s 4 calls abc.TarFile 0.001s 66 calls diffoscope.comparators.elf.ElfSection 0.001s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 16 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.elf.ElfStringSection 0.000s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 1638.915s) 1638.646s 2 calls outputs 0.269s 1 call cleanup ## open_archive (total time: 0.002s) 0.001s 40 calls diffoscope.comparators.xz.XzContainer 0.000s 28 calls diffoscope.comparators.tar.TarContainer 0.000s 20 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 368.361s) 368.264s 1 call html 0.088s 1 call text 0.010s 1 call json ## recognizes (total time: 10.953s) 7.162s 1564 calls diffoscope.comparators.utils.archive.ArchiveMember 1.541s 3184 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 1.120s 1188 calls diffoscope.comparators.elf.ElfSection 0.632s 10 calls diffoscope.comparators.binary.FilesystemFile 0.274s 288 calls diffoscope.comparators.elf.ElfCodeSection 0.151s 504 calls diffoscope.comparators.debian.DebControlMember 0.068s 72 calls diffoscope.comparators.elf.ElfStringSection 0.003s 36 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.001s 56 calls abc.Md5sumsFile 0.000s 16 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls abc.DotChangesFile Fri Aug 14 07:05:47 UTC 2020 E: pymol failed to build reproducibly in buster on arm64. Fri Aug 14 07:05:49 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Aug 14 07:05:49 UTC 2020 I: Submitting 16K b1/pymol_2.2.0+dfsg-4_arm64.buildinfo.asc Fri Aug 14 07:05:50 UTC 2020 I: Submitting 16K b2/pymol_2.2.0+dfsg-4_arm64.buildinfo.asc Fri Aug 14 07:05:50 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 14 07:05:50 UTC 2020 I: Done submitting .buildinfo files. Fri Aug 14 07:05:50 UTC 2020 I: Removing signed pymol_2.2.0+dfsg-4_arm64.buildinfo.asc files: removed './b1/pymol_2.2.0+dfsg-4_arm64.buildinfo.asc' removed './b2/pymol_2.2.0+dfsg-4_arm64.buildinfo.asc'