Thu May 28 16:33:47 UTC 2020 I: starting to build aevol/buster/armhf on jenkins on '2020-05-28 16:33' Thu May 28 16:33:47 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/2602/console.log Thu May 28 16:33:47 UTC 2020 I: Downloading source for buster/aevol=5.0-2 --2020-05-28 16:33:47-- http://deb.debian.org/debian/pool/main/a/aevol/aevol_5.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1960 (1.9K) Saving to: ‘aevol_5.0-2.dsc’ 0K . 100% 104M=0s 2020-05-28 16:33:47 (104 MB/s) - ‘aevol_5.0-2.dsc’ saved [1960/1960] Thu May 28 16:33:47 UTC 2020 I: aevol_5.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: aevol Binary: aevol Architecture: any Version: 5.0-2 Maintainer: Debian Med Packaging Team Uploaders: David Parsons Homepage: http://www.aevol.fr/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/aevol Vcs-Git: https://salsa.debian.org/med-team/aevol.git Build-Depends: debhelper (>= 11~), zlib1g-dev, libx11-dev, libboost-dev, libboost-system-dev, libboost-filesystem-dev Package-List: aevol deb science optional arch=any Checksums-Sha1: 36e268a6aa33fd2cf566d7ce27974c9c5f17414c 569534 aevol_5.0.orig.tar.gz 1b0fd9b9fec3627fbebb0ca238f1e9e4b5b0ee64 6136 aevol_5.0-2.debian.tar.xz Checksums-Sha256: 6baa372924a3ccb4cd96fb91bf7f2d1d045edb4cf12b19a139c703c75b299f74 569534 aevol_5.0.orig.tar.gz 33790a375121df1183e7a948d236bbe5d1062c594a8d9e2d5e94bedc1b5cb3fc 6136 aevol_5.0-2.debian.tar.xz Files: 1e56d877461ac92c1a512ef71b4730ed 569534 aevol_5.0.orig.tar.gz d7edb0818bdff0e2d0dedd2278e15bbf 6136 aevol_5.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlup/McRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEsFRAAgpdHqUTpI0LzxRqWzCPN947e0uWDWkSg 9gUjMhU50kXgXCM0MOrfsRnSwsE4Gggw9r/4AUvJyQOpTsfvTCD6+IcEr39GOQ47 QIKKpjKKy6x+3qKkW7mBQIA2KGMYUF7jvXU3LSSHm/UGEXBz70ZEUf87aJrXJqzF oOxCi22AIw/Me8sar2epqBBCuOMhu6ePm2giYKsYN2wEVsD4csG+CwVvA2E2Blrs 1CnB3bIsIVUHBSZjLRbA154VCMW3xWqS4+9o3QuIw6lb1WulyU1aIk9kvwGSVb61 nlH/OsCqJeZTN9VvX6Pg6CbCEFuhY0WqLR9L+weXkK58hYveZFXXuBi5RHc6Pv9O sn3bXx4XlqKQkBTzDLmPdF5DE21ZRW2VVX0fxd3MF9LaudAQLfF39y5hAp/Ob5p9 omj0z1yGdFBKhZHmOh8mjgjbUetrLwzzZZ9egNLS7NY1jXo6xHVy6p53KIlh2DsC KP2d9LlIaW975Bv0wo/7MaVjpwmk02LSSX/MPDaK7jQPDSnRQUgFcvc0sR0X8PhK LUfBOngv9Ern3qo25m7lwdCFnPj5aYBq5Hr+x9WXxY9KDzB7URLqcR4cNwS23iwM yc57kShxgCgC8nUTxR7CBN4C2seen5l5ZaVDlSxHUwCiFfBIlAnZcr9KofIzJk6f FTlAwduwU90= =/4cF -----END PGP SIGNATURE----- Thu May 28 16:33:47 UTC 2020 I: Checking whether the package is not for us Thu May 28 16:33:47 UTC 2020 I: Starting 1st build on remote node opi2a-armhf-rb.debian.net. Thu May 28 16:33:47 UTC 2020 I: Preparing to do remote build '1' on opi2a-armhf-rb.debian.net. Thu May 28 16:48:31 UTC 2020 I: Deleting $TMPDIR on opi2a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 28 04:33:58 -12 2020 I: pbuilder-time-stamp: 1590683638 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [aevol_5.0-2.dsc] I: copying [./aevol_5.0.orig.tar.gz] I: copying [./aevol_5.0-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Sep 24 21:15:51 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./aevol_5.0-2.dsc dpkg-source: info: extracting aevol in aevol-5.0 dpkg-source: info: unpacking aevol_5.0.orig.tar.gz dpkg-source: info: unpacking aevol_5.0-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), zlib1g-dev, libx11-dev, libboost-dev, libboost-system-dev, libboost-filesystem-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libx11-dev; however: Package libx11-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libpthread-stubs0-dev{a} libsigsegv2{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} x11proto-core-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After unpacking 209 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get: 36 http://deb.debian.org/debian buster/main armhf libboost-filesystem1.67.0 armhf 1.67.0-13+deb10u1 [255 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libboost-system1.67-dev armhf 1.67.0-13+deb10u1 [232 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libboost-filesystem1.67-dev armhf 1.67.0-13+deb10u1 [262 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libboost-filesystem-dev armhf 1.67.0.1 [3684 B] Get: 40 http://deb.debian.org/debian buster/main armhf libboost-system-dev armhf 1.67.0.1 [3788 B] Get: 41 http://deb.debian.org/debian buster/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 42 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1 [298 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get: 47 http://deb.debian.org/debian buster/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 48 http://deb.debian.org/debian buster/main armhf x11proto-dev all 2018.4-4 [251 kB] Get: 49 http://deb.debian.org/debian buster/main armhf x11proto-core-dev all 2018.4-4 [3128 B] Get: 50 http://deb.debian.org/debian buster/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 52 http://deb.debian.org/debian buster/main armhf xtrans-dev all 1.3.5-1 [100 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libxcb1-dev armhf 1.13.1-2 [171 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libx11-dev armhf 2:1.6.7-1 [771 kB] Get: 55 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Fetched 30.1 MB in 6s (5302 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libboost1.67-dev:armhf. Preparing to unpack .../33-libboost1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-dev:armhf. Preparing to unpack .../34-libboost-dev_1.67.0.1_armhf.deb ... Unpacking libboost-dev:armhf (1.67.0.1) ... Selecting previously unselected package libboost-filesystem1.67.0:armhf. Preparing to unpack .../35-libboost-filesystem1.67.0_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-filesystem1.67.0:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-system1.67-dev:armhf. Preparing to unpack .../36-libboost-system1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-system1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem1.67-dev:armhf. Preparing to unpack .../37-libboost-filesystem1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-filesystem1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem-dev:armhf. Preparing to unpack .../38-libboost-filesystem-dev_1.67.0.1_armhf.deb ... Unpacking libboost-filesystem-dev:armhf (1.67.0.1) ... Selecting previously unselected package libboost-system-dev:armhf. Preparing to unpack .../39-libboost-system-dev_1.67.0.1_armhf.deb ... Unpacking libboost-system-dev:armhf (1.67.0.1) ... Selecting previously unselected package libpthread-stubs0-dev:armhf. Preparing to unpack .../40-libpthread-stubs0-dev_0.4-1_armhf.deb ... Unpacking libpthread-stubs0-dev:armhf (0.4-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../41-libxau6_1%3a1.0.8-1+b2_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../42-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. 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Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libxau6:armhf (1:1.0.8-1+b2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libboost-filesystem1.67.0:armhf (1.67.0-13+deb10u1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libboost-system1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libxau-dev:armhf (1:1.0.8-1+b2) ... Setting up libboost-filesystem1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libboost-system-dev:armhf (1.67.0.1) ... Setting up m4 (1.4.18-2) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libboost-filesystem-dev:armhf (1.67.0.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/aevol-5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package aevol dpkg-buildpackage: info: source version 5.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for clang-omp++... no checking for clang++... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking whether g++ supports C++14 features by default... yes checking whether g++ supports C++11 features by default... yes checking for ranlib... ranlib checking for g++ option to support OpenMP... -fopenmp checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking omp.h usability... yes checking omp.h presence... yes checking for omp.h... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for boostlib >= 1.55... yes checking whether the Boost::System library is available... yes checking for exit in -lboost_system... yes checking whether the Boost::Filesystem library is available... yes checking for exit in -lboost_filesystem... yes checking for cos in -lm... yes checking for gzread in -lz... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for size_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for floor... yes checking for memset... yes checking for mkdir... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for gzread... yes checking whether to enable graphical outputs... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking for XOpenDisplay in -lX11... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking X11/Xutil.h usability... yes checking X11/Xutil.h presence... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking X11/Xatom.h usability... yes checking X11/Xatom.h presence... yes checking for X11/Xatom.h... yes checking X11/cursorfont.h usability... yes checking X11/cursorfont.h presence... yes checking for X11/cursorfont.h... yes checking whether to use compile time optimization... yes checking whether to use normalized fitness... no checking whether to use a particular period for the Mersenne Twister... 607 checking whether to use trivial Mersenne Twister jumps... no checking whether to use devel features... no checking whether to use debugging features... no checking whether to enable profiling... no checking whether to use raevol... no checking whether to use BLAS library... no checking whether to use MKL library... no checking whether to use ATLAS library... no checking whether to use TBB library... no checking whether to use tracing... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/libaevol/Makefile config.status: creating src/libaevol/SFMT-src-1.4/Makefile config.status: creating src/post_treatments/Makefile config.status: creating doc/Makefile config.status: executing depfiles commands config.status: executing user_warning commands config.status: Consider using make clean if you are re-configuring. configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j3 make[1]: Entering directory '/build/aevol-5.0' Making all in src make[2]: Entering directory '/build/aevol-5.0/src' Making all in libaevol make[3]: Entering directory '/build/aevol-5.0/src/libaevol' Making all in SFMT-src-1.4 make[4]: Entering directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' gcc -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I./ -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsfmt_a-SFMT.o `test -f 'SFMT.c' || echo './'`SFMT.c g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I./ -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jump/libsfmt_a-SFMT-jump.o `test -f 'jump/SFMT-jump.cpp' || echo './'`jump/SFMT-jump.cpp rm -f libsfmt.a ar cru libsfmt.a libsfmt_a-SFMT.o jump/libsfmt_a-SFMT-jump.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libsfmt.a make[4]: Leaving directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' Making all in . make[4]: Entering directory '/build/aevol-5.0/src/libaevol' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Alignment.o Alignment.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Codon.o Codon.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Dna.o Dna.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Dump.o Dump.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpManager.o ExpManager.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpSetup.o ExpSetup.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GeneticUnit.o GeneticUnit.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GridCell.o GridCell.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Individual.o Individual.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndividualFactory.o IndividualFactory.cpp In file included from /usr/include/c++/8/list:64, from Dna.h:36, from GeneticUnit.h:35, from GeneticUnit.cpp:33: /usr/include/c++/8/bits/list.tcc: In member function 'std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::insert(std::__cxx11::list<_Tp, _Alloc>::const_iterator, _InputIterator, _InputIterator) [with _InputIterator = std::_List_iterator; = void; _Tp = aevol::Rna; _Alloc = std::allocator]': /usr/include/c++/8/bits/list.tcc:133:7: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 list<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:133:7: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc:133:7: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc:133:7: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc:133:7: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Logging.o Logging.cpp GeneticUnit.cpp: In member function 'void aevol::GeneticUnit::extract_leading_promoters_starting_between(int32_t, int32_t, aevol::Promoters1Strand&)': GeneticUnit.cpp:2081:67: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 extracted_promoters.insert(extracted_promoters.end(), first, end); ^ GeneticUnit.cpp:2081:67: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 GeneticUnit.cpp: In member function 'void aevol::GeneticUnit::extract_lagging_promoters_starting_between(int32_t, int32_t, aevol::Promoters1Strand&)': GeneticUnit.cpp:2110:67: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 extracted_promoters.insert(extracted_promoters.end(), first, end); ^ GeneticUnit.cpp:2110:67: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 GeneticUnit.cpp: In member function 'void aevol::GeneticUnit::promoters(aevol::Strand, aevol::Position, int32_t, int32_t, aevol::Promoters1Strand&)': GeneticUnit.cpp:1993:53: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 promoters.insert(promoters.end(), it_begin, it_end); ^ GeneticUnit.cpp:1993:53: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 In file included from /usr/include/c++/8/list:64, from Dna.h:36, from GeneticUnit.h:35, from GeneticUnit.cpp:33: /usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator; _Tp = aevol::Rna; _Alloc = std::allocator]': /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 list<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc: In member function 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = std::__cxx11::list; _Alloc = std::allocator >]': /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Mutation.o Mutation.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 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-D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MutationParams.o MutationParams.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PhenotypicTarget.o PhenotypicTarget.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PhenotypicTargetHandler.o PhenotypicTargetHandler.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Point.o Point.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Protein.o Protein.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o JumpingMT.o JumpingMT.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ReplicationReport.o ReplicationReport.cpp In file included from /usr/include/c++/8/list:64, from PhenotypicTargetHandler.h:41, from PhenotypicTargetHandler.cpp:37: /usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator; _Tp = aevol::Gaussian; _Alloc = std::allocator]': /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 list<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc: In copy constructor 'aevol::PhenotypicTargetHandler::PhenotypicTargetHandler(const aevol::PhenotypicTargetHandler&)': /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o DnaReplicationReport.o DnaReplicationReport.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 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-ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Selection.o Selection.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 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-DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Fuzzy.o Fuzzy.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Habitat.o Habitat.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ParamLoader.o ParamLoader.cpp Fuzzy.cpp: In member function 'double aevol::Fuzzy::y(double, std::__cxx11::list::const_iterator) const': Fuzzy.cpp:61:8: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 double Fuzzy::y(double x, list::const_iterator begin) const { ^~~~~ Fuzzy.cpp:61:8: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 Fuzzy.cpp: In member function 'double aevol::Fuzzy::y(double) const': Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp: In member function 'double aevol::Fuzzy::get_geometric_area(std::__cxx11::list::const_iterator, std::__cxx11::list::const_iterator) const': Fuzzy.cpp:249:8: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 double Fuzzy::get_geometric_area(list::const_iterator begin, ^~~~~ Fuzzy.cpp:249:8: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 Fuzzy.cpp: In member function 'virtual double aevol::Fuzzy::get_geometric_area() const': Fuzzy.cpp:244:28: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return get_geometric_area(points_.begin(), points_.end()); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp: In member function 'virtual double aevol::Fuzzy::get_geometric_area(double, double) const': Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp:276:41: note: parameter passing for argument of type 'std::__cxx11::list::const_iterator' {aka 'std::_List_const_iterator'} changed in GCC 7.1 return first_part + get_geometric_area(begin, end) + last_part; ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ Fuzzy.cpp: In member function 'std::__cxx11::list::iterator aevol::Fuzzy::create_interpolated_point(double, std::__cxx11::list::iterator)': Fuzzy.cpp:382:23: note: parameter passing for argument of type 'std::__cxx11::list::iterator' {aka 'std::_List_iterator'} changed in GCC 7.1 list::iterator Fuzzy::create_interpolated_point(double x, std::list::iterator start) { ^~~~~ Fuzzy.cpp:382:23: note: parameter passing for argument of type 'std::__cxx11::list::iterator' {aka 'std::_List_iterator'} changed in GCC 7.1 Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp: In member function 'std::__cxx11::list::iterator aevol::Fuzzy::create_interpolated_point(double)': Fuzzy.cpp:374:54: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 return create_interpolated_point(x, points_.begin()); ^ Fuzzy.cpp: In member function 'virtual void aevol::Fuzzy::add(const aevol::AbstractFuzzy&)': Fuzzy.cpp:374:54: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 return create_interpolated_point(x, points_.begin()); ^ Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp: In member function 'virtual void aevol::Fuzzy::sub(const aevol::AbstractFuzzy&)': Fuzzy.cpp:374:54: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 return create_interpolated_point(x, points_.begin()); ^ Fuzzy.cpp:82:11: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 return y(x, points_.begin()); ~^~~~~~~~~~~~~~~~~~~~ Fuzzy.cpp: In function 'virtual void aevol::Fuzzy::add_triangle(double, double, double)': Fuzzy.cpp:374:54: note: parameter passing for argument of type 'std::_List_iterator' changed in GCC 7.1 return create_interpolated_point(x, points_.begin()); ^ Fuzzy.cpp:179:42: note: parameter passing for argument of type 'std::__cxx11::list::iterator' {aka 'std::_List_iterator'} changed in GCC 7.1 p1 = create_interpolated_point(mean, p0); ^ Fuzzy.cpp:180:58: note: parameter passing for argument of type 'std::__cxx11::list::iterator' {aka 'std::_List_iterator'} changed in GCC 7.1 if (x2 <= X_MAX) p2 = create_interpolated_point(x2, p1); ^ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ParameterLine.o ParameterLine.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o AeTime.o AeTime.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o World.o World.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HabitatFactory.o HabitatFactory.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Individual_X11.o Individual_X11.cpp In file included from /usr/include/c++/8/list:64, from ParamLoader.cpp:38: /usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator; _Tp = aevol::Gaussian; _Alloc = std::allocator]': /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 list<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc: In member function 'void aevol::ParamLoader::load(aevol::ExpManager*, bool, char*, int32_t, char*, int32_t)': /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpManager_X11.o ExpManager_X11.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o X11Window.o X11Window.cpp rm -f libaevol.a ar cru libaevol.a Alignment.o Codon.o Dna.o Dump.o ExpManager.o ExpSetup.o GeneticUnit.o GridCell.o Individual.o IndividualFactory.o Logging.o Mutation.o PointMutation.o SmallInsertion.o SmallDeletion.o Duplication.o Deletion.o Translocation.o Inversion.o InsertionHT.o ReplacementHT.o Observable.o OutputManager.o MutationParams.o PhenotypicTarget.o PhenotypicTargetHandler.o Point.o Protein.o JumpingMT.o ReplicationReport.o DnaReplicationReport.o Rna.o Stats.o StatRecord.o ae_string.o Tree.o Utils.o VisAVis.o Selection.o AbstractFuzzy.o HybridFuzzy.o FuzzyFactory.o Fuzzy.o Habitat.o ParamLoader.o ParameterLine.o AeTime.o World.o HabitatFactory.o Individual_X11.o ExpManager_X11.o X11Window.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libaevol.a make[4]: Leaving directory '/build/aevol-5.0/src/libaevol' make[3]: Leaving directory '/build/aevol-5.0/src/libaevol' Making all in post_treatments make[3]: Entering directory '/build/aevol-5.0/src/post_treatments' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ancestor_stats.o ancestor_stats.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ancestor_robustness.o ancestor_robustness.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndivAnalysis.o IndivAnalysis.cpp ancestor_robustness.cpp:48:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] static char* output_file_name = "robustness_summary.txt"; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o create_eps.o create_eps.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract.o extract.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lineage.o lineage.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mutagenesis.o mutagenesis.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o robustness.o robustness.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o view.o view.cpp robustness.cpp: In function 'int main(int, char**)': robustness.cpp:115:27: warning: '/robustness-summary-' directive output may be truncated writing 20 bytes into a region of size between 1 and 255 [-Wformat-truncation=] snprintf(filename, 255, "%s/robustness-summary-%" PRId64 "-i%" PRId32 "-r%" PRId32, ^ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from robustness.cpp:33: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 321 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ robustness.cpp:121:27: warning: '/robustness-detailed-' directive output may be truncated writing 21 bytes into a region of size between 1 and 255 [-Wformat-truncation=] snprintf(filename, 255, "%s/robustness-detailed-%" PRId64 "-i%" PRId32 "-r%" PRId32, ^ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from robustness.cpp:33: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 29 and 322 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_ancestor_stats ancestor_stats.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_ancestor_robustness ancestor_robustness.o IndivAnalysis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_create_eps create_eps.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_extract extract.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_lineage lineage.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_mutagenesis mutagenesis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_robustness robustness.o IndivAnalysis.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L../../src/libaevol -Wl,-z,relro -Wl,-z,now -o aevol_misc_view view.o ../../src/libaevol/libaevol.a ../../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm make[3]: Leaving directory '/build/aevol-5.0/src/post_treatments' make[3]: Entering directory '/build/aevol-5.0/src' g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aevol_run.o aevol_run.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aevol_create.o aevol_create.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aevol_modify.o aevol_modify.cpp g++ -DPACKAGE_NAME=\"AEVOL\" -DPACKAGE_TARNAME=\"aevol\" -DPACKAGE_VERSION=\"5.0\" -DPACKAGE_STRING=\"AEVOL\ 5.0\" -DPACKAGE_BUGREPORT=\"aevol-bugs@lists.gforge.inria.fr\" -DPACKAGE_URL=\"www.aevol.fr\" -DPACKAGE=\"aevol\" -DVERSION=\"5.0\" -DHAVE_CXX14=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ -DHAVE_LIBM=1 -DHAVE_LIBZ=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_FLOOR=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_GZREAD=1 -D__X11=1 -DHAVE_LIBX11=1 -DHAVE_X11_XLIB_H=1 -DHAVE_X11_XUTIL_H=1 -DHAVE_X11_KEYSYM_H=1 -DHAVE_X11_XATOM_H=1 -DHAVE_X11_CURSORFONT_H=1 -DSFMT_MEXP=607 -DNDEBUG=1 -I. -I../src/libaevol -D__STDC_FORMAT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -D_FORTIFY_SOURCE=2 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aevol_propagate-aevol_propagate.o `test -f 'aevol_propagate.cpp' || echo './'`aevol_propagate.cpp g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o aevol_run aevol_run.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o aevol_create aevol_create.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm In file included from /usr/include/c++/8/list:64, from aevol_modify.cpp:38: /usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator; _Tp = aevol::Gaussian; _Alloc = std::allocator]': /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 list<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/list.tcc: In function 'int main(int, char**)': /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator' changed in GCC 7.1 _M_assign_dispatch(__x.begin(), __x.end(), __false_type()); ^~~~~~~~~~~~~~~~~~ g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o aevol_modify aevol_modify.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lX11 -lz -lm g++ -fopenmp -O3 -ffast-math -pipe -fexpensive-optimizations -g -O2 -ffile-prefix-map=/build/aevol-5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -L/usr/lib/arm-linux-gnueabihf -Wl,-z,relro -Wl,-z,now -o aevol_propagate aevol_propagate-aevol_propagate.o ../src/libaevol/libaevol.a ../src/libaevol/SFMT-src-1.4/libsfmt.a -lboost_system -lboost_filesystem -lX11 -lz -lm make[3]: Leaving directory '/build/aevol-5.0/src' make[2]: Leaving directory '/build/aevol-5.0/src' Making all in doc make[2]: Entering directory '/build/aevol-5.0/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/aevol-5.0/doc' make[2]: Entering directory '/build/aevol-5.0' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/aevol-5.0' make[1]: Leaving directory '/build/aevol-5.0' dh_auto_test make -j3 check VERBOSE=1 make[1]: Entering directory '/build/aevol-5.0' Making check in src make[2]: Entering directory '/build/aevol-5.0/src' Making check in libaevol make[3]: Entering directory '/build/aevol-5.0/src/libaevol' Making check in SFMT-src-1.4 make[4]: Entering directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' Making check in . make[4]: Entering directory '/build/aevol-5.0/src/libaevol' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/aevol-5.0/src/libaevol' make[3]: Leaving directory '/build/aevol-5.0/src/libaevol' Making check in post_treatments make[3]: Entering directory '/build/aevol-5.0/src/post_treatments' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/aevol-5.0/src/post_treatments' make[3]: Entering directory '/build/aevol-5.0/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/aevol-5.0/src' make[2]: Leaving directory '/build/aevol-5.0/src' Making check in doc make[2]: Entering directory '/build/aevol-5.0/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/aevol-5.0/doc' make[2]: Entering directory '/build/aevol-5.0' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/aevol-5.0' make[1]: Leaving directory '/build/aevol-5.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j3 install DESTDIR=/build/aevol-5.0/debian/aevol AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/aevol-5.0' Making install in src make[2]: Entering directory '/build/aevol-5.0/src' Making install in libaevol make[3]: Entering directory '/build/aevol-5.0/src/libaevol' Making install in SFMT-src-1.4 make[4]: Entering directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' make[5]: Entering directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' make[4]: Leaving directory '/build/aevol-5.0/src/libaevol/SFMT-src-1.4' Making install in . make[4]: Entering directory '/build/aevol-5.0/src/libaevol' make[5]: Entering directory '/build/aevol-5.0/src/libaevol' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/aevol-5.0/src/libaevol' make[4]: Leaving directory '/build/aevol-5.0/src/libaevol' make[3]: Leaving directory '/build/aevol-5.0/src/libaevol' Making install in post_treatments make[3]: Entering directory '/build/aevol-5.0/src/post_treatments' make[4]: Entering directory '/build/aevol-5.0/src/post_treatments' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/aevol-5.0/debian/aevol/usr/bin' /usr/bin/install -c aevol_misc_ancestor_stats aevol_misc_ancestor_robustness aevol_misc_create_eps aevol_misc_extract aevol_misc_lineage aevol_misc_mutagenesis aevol_misc_robustness aevol_misc_view '/build/aevol-5.0/debian/aevol/usr/bin' make[4]: Leaving directory '/build/aevol-5.0/src/post_treatments' make[3]: Leaving directory '/build/aevol-5.0/src/post_treatments' make[3]: Entering directory '/build/aevol-5.0/src' make[4]: Entering directory '/build/aevol-5.0/src' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/aevol-5.0/debian/aevol/usr/bin' /usr/bin/install -c aevol_run aevol_create aevol_modify aevol_propagate '/build/aevol-5.0/debian/aevol/usr/bin' make[4]: Leaving directory '/build/aevol-5.0/src' make[3]: Leaving directory '/build/aevol-5.0/src' make[2]: Leaving directory '/build/aevol-5.0/src' Making install in doc make[2]: Entering directory '/build/aevol-5.0/doc' make[3]: Entering directory '/build/aevol-5.0/doc' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/aevol-5.0/debian/aevol/usr/share/man/man1' /usr/bin/install -c -m 644 aevol_create.1 aevol_run.1 aevol_modify.1 aevol_propagate.1 aevol_misc_lineage.1 aevol_misc_ancestor_stats.1 aevol_misc_robustness.1 aevol_misc_compute_pop_stats.1 aevol_misc_view.1 aevol_misc_create_eps.1 aevol_misc_extract.1 aevol_misc_gene_families.1 '/build/aevol-5.0/debian/aevol/usr/share/man/man1' make[3]: Leaving directory '/build/aevol-5.0/doc' make[2]: Leaving directory '/build/aevol-5.0/doc' make[2]: Entering directory '/build/aevol-5.0' make[3]: Entering directory '/build/aevol-5.0' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/aevol-5.0' make[2]: Leaving directory '/build/aevol-5.0' make[1]: Leaving directory '/build/aevol-5.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_ancestor_robustness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_ancestor_stats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_create_eps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_robustness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_lineage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_create contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_mutagenesis contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_view contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_modify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_misc_extract contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_propagate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/aevol/usr/bin/aevol_run contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/aevol/usr/bin/aevol_propagate was not linked against libboost_system.so.1.67.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'aevol-dbgsym' in '../aevol-dbgsym_5.0-2_armhf.deb'. dpkg-deb: building package 'aevol' in '../aevol_5.0-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../aevol_5.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28208 and its subdirectories I: Current time: Thu May 28 04:47:46 -12 2020 I: pbuilder-time-stamp: 1590684466 Thu May 28 16:48:33 UTC 2020 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net. Thu May 28 16:48:33 UTC 2020 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net. Thu May 28 17:02:27 UTC 2020 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. Thu May 28 17:02:29 UTC 2020 I: aevol_5.0-2_armhf.changes: Format: 1.8 Date: Tue, 25 Sep 2018 11:05:21 +0200 Source: aevol Binary: aevol aevol-dbgsym Architecture: armhf Version: 5.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: aevol - digital genetics model to run Evolution Experiments in silico Changes: aevol (5.0-2) unstable; urgency=medium . * Team upload. * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 7559aeb681e924412c4b9e3f45e0c2cbbcbfeb57 25832488 aevol-dbgsym_5.0-2_armhf.deb 03b54726cb1d78f16386460d22b660becd7b3db5 5214 aevol_5.0-2_armhf.buildinfo cbf1283f42ec5c736b8ec027a1d5ce6c04891547 405368 aevol_5.0-2_armhf.deb Checksums-Sha256: c0bf3bf6fe5276c9dc5399dc02d681db74fb19bcdc0290dba80de693cf98fb5d 25832488 aevol-dbgsym_5.0-2_armhf.deb 7a153be86ea8545fa2e676f8147e08c62410e9a19da4baede254601392ff705f 5214 aevol_5.0-2_armhf.buildinfo 72bd4c2ecbf077029747610ff2fef750f79ac8993ef88ef3be0eaa77e0e2a776 405368 aevol_5.0-2_armhf.deb Files: fbdefaa86fc0b3cc0d752288637718d4 25832488 debug optional aevol-dbgsym_5.0-2_armhf.deb f8becbc3c61659a02485213d7454e7d4 5214 science optional aevol_5.0-2_armhf.buildinfo 46af2402e4aadeef4f3aee5465bce6a8 405368 science optional aevol_5.0-2_armhf.deb Thu May 28 17:02:32 UTC 2020 I: diffoscope 145 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.RAlprqIDPW/aevol_5.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.RAlprqIDPW/aevol_5.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.RAlprqIDPW/aevol_5.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.RAlprqIDPW/b1/aevol_5.0-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.RAlprqIDPW/b2/aevol_5.0-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.741s) 1.741s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.330s) 1.330s 10 calls diffoscope.comparators.binary.FilesystemFile Thu May 28 17:08:51 UTC 2020 I: diffoscope 145 found no differences in the changes files, and a .buildinfo file also exists. Thu May 28 17:08:51 UTC 2020 I: aevol from buster built successfully and reproducibly on armhf. Thu May 28 17:08:53 UTC 2020 I: Submitting .buildinfo files to external archives: Thu May 28 17:08:53 UTC 2020 I: Submitting 8.0K b1/aevol_5.0-2_armhf.buildinfo.asc Thu May 28 17:08:54 UTC 2020 I: Submitting 8.0K b2/aevol_5.0-2_armhf.buildinfo.asc Thu May 28 17:08:56 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 28 17:08:56 UTC 2020 I: Done submitting .buildinfo files. Thu May 28 17:08:56 UTC 2020 I: Removing signed aevol_5.0-2_armhf.buildinfo.asc files: removed './b1/aevol_5.0-2_armhf.buildinfo.asc' removed './b2/aevol_5.0-2_armhf.buildinfo.asc'