Mon May 25 17:59:36 UTC 2020 I: starting to build dialign/buster/armhf on jenkins on '2020-05-25 17:59'
Mon May 25 17:59:36 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_48/1752/console.log
Mon May 25 17:59:36 UTC 2020 I: Downloading source for buster/dialign=2.2.1-10
--2020-05-25 17:59:36-- http://deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-10.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1977 (1.9K)
Saving to: ‘dialign_2.2.1-10.dsc’
0K . 100% 175M=0s
2020-05-25 17:59:36 (175 MB/s) - ‘dialign_2.2.1-10.dsc’ saved [1977/1977]
Mon May 25 17:59:36 UTC 2020 I: dialign_2.2.1-10.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: dialign
Binary: dialign
Architecture: any
Version: 2.2.1-10
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>
Homepage: http://dialign.gobics.de/
Standards-Version: 4.2.0
Vcs-Browser: https://salsa.debian.org/med-team/dialign
Vcs-Git: https://salsa.debian.org/med-team/dialign.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11~)
Package-List:
dialign deb science optional arch=any
Checksums-Sha1:
2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz
3408adbc198581b214888c9b02293a2482640255 12164 dialign_2.2.1-10.debian.tar.xz
Checksums-Sha256:
046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz
e0022710404dccf0fc9cc8791c640ecab314e58e1975f3a78b44abc44c279d00 12164 dialign_2.2.1-10.debian.tar.xz
Files:
3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz
d00b6b141a79c7773516b167d73ac68e 12164 dialign_2.2.1-10.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=wQ9+
-----END PGP SIGNATURE-----
Mon May 25 17:59:36 UTC 2020 I: Checking whether the package is not for us
Mon May 25 17:59:36 UTC 2020 I: Starting 1st build on remote node jtx1a-armhf-rb.debian.net.
Mon May 25 17:59:37 UTC 2020 I: Preparing to do remote build '1' on jtx1a-armhf-rb.debian.net.
Mon May 25 18:01:04 UTC 2020 I: Deleting $TMPDIR on jtx1a-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon May 25 05:59:43 -12 2020
I: pbuilder-time-stamp: 1590429583
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [dialign_2.2.1-10.dsc]
I: copying [./dialign_2.2.1.orig.tar.gz]
I: copying [./dialign_2.2.1-10.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Aug 18 22:37:27 2018 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dialign_2.2.1-10.dsc
dpkg-source: info: extracting dialign in dialign-2.2.1
dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz
dpkg-source: info: unpacking dialign_2.2.1-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch
dpkg-source: info: applying 30_local_doc.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying fix_excess_argument.patch
dpkg-source: info: applying spelling.patch
I: using fakeroot in build.
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11~)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Fetched 18.2 MB in 2s (11.2 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:armhf.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic-mgc (1:5.35-4+deb10u1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ...
Selecting previously unselected package file.
Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking file (1:5.35-4+deb10u1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../13-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.6-9_all.deb ...
Unpacking libtool (2.4.6-9) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.12-3_armhf.deb ...
Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ...
Unpacking libicu63:armhf (63.1-6+deb10u1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-3) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ...
Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../31-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../32-debhelper_12.1.1_all.deb ...
Unpacking debhelper (12.1.1) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libmagic-mgc (1:5.35-4+deb10u1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ...
No schema files found: doing nothing.
Setting up libmagic1:armhf (1:5.35-4+deb10u1) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.35-4+deb10u1) ...
Setting up libicu63:armhf (63.1-6+deb10u1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libbsd0:armhf (0.9.1-2) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up libtool (2.4.6-9) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.1.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Processing triggers for libc-bin (2.28-10) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package dialign
dpkg-buildpackage: info: source version 2.2.1-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/dialign-2.2.1'
find src/ -name '*.o' -delete
dh_clean src/dialign2-2
make[1]: Leaving directory '/build/dialign-2.2.1'
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/dialign-2.2.1'
## CFLAGS = -c -I-DCONS -O2
dh_auto_build --sourcedirectory=src
cd src && make -j3 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/dialign-2.2.1/src'
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c
dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int]
main(int argc, char **argv)
^~~~
dialign.c: In function 'main':
dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration]
regex_parse( mot_regex ) ;
^~~~~~~~~~~
functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int]
wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
^~~~~~~~~~~~~~
functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int]
plot_calc( int num , int e_len, float *w_count, float *pl,
^~~~~~~~~
dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration]
seq_parse( mot_regex ) ;
^~~~~~~~~
dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration]
exclude_frg_read ( input_name , exclude_list ) ;
^~~~~~~~~~~~~~~~
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c
output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int]
extern plot_calc( int num , int e_len, float *w_count, float *pl,
^~~~~~~~~
output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int]
extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt,
^~~~~~~~~~~~~~
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c
anchor.c: In function 'multi_anc_read':
anchor.c:118:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration]
erreur("\n\n cannot find file with anchor points \n\n\n");
^~~~~~
perror
anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration]
if( word_count( line ) == 6 ) {
^~~~~~~~~~
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c
regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int]
seq_parse( char *mot_regex ) {
^~~~~~~~~
input.c: In function 'exclude_frg_read':
input.c:65:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration]
erreur("\n\n cannot find file with excluded fragments \n\n\n");
^~~~~~
perror
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c
gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c
gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/dialign-2.2.1/src'
make[1]: Leaving directory '/build/dialign-2.2.1'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_strip
dh_makeshlibs
dh_shlibdeps
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'dialign' in '../dialign_2.2.1-10_armhf.deb'.
dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-10_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../dialign_2.2.1-10_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/747 and its subdirectories
I: Current time: Mon May 25 06:00:59 -12 2020
I: pbuilder-time-stamp: 1590429659
Mon May 25 18:01:06 UTC 2020 I: 1st build successful. Starting 2nd build on remote node odxu4a-armhf-rb.debian.net.
Mon May 25 18:01:06 UTC 2020 I: Preparing to do remote build '2' on odxu4a-armhf-rb.debian.net.
Mon May 25 18:02:24 UTC 2020 I: Deleting $TMPDIR on odxu4a-armhf-rb.debian.net.
Mon May 25 18:02:26 UTC 2020 I: dialign_2.2.1-10_armhf.changes:
Format: 1.8
Date: Sun, 19 Aug 2018 12:26:16 +0200
Source: dialign
Binary: dialign dialign-dbgsym
Architecture: armhf
Version: 2.2.1-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dialign - Segment-based multiple sequence alignment
Changes:
dialign (2.2.1-10) unstable; urgency=medium
.
[ Steffen Moeller ]
* Added references to registries RRID (SCR_008417),
OMICtools (OMIC_00973) and bio.tools (Dialign)
.
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.0
Checksums-Sha1:
5d7b8f546ac7bf0ca0d57fb1dd764ea0aea24191 69616 dialign-dbgsym_2.2.1-10_armhf.deb
200bd5e42f9dd045c5c74f46a5484883ddf68ff2 4473 dialign_2.2.1-10_armhf.buildinfo
442a057457022026fac0567094fb86e2b99f44aa 136412 dialign_2.2.1-10_armhf.deb
Checksums-Sha256:
3cd3a6535a49f0d9a0b9e08f8c654c82ba2cf6bc5098483fc3cbe67bf305ea72 69616 dialign-dbgsym_2.2.1-10_armhf.deb
61e8f9bf1d1fb1e66728fb8c19e922a73d9e2923d5f0c5cde427cdc6ff534a93 4473 dialign_2.2.1-10_armhf.buildinfo
5e5e847890c4ba9ff8d0dc8f69c3b805afe34cc85cc1477af250072a3fbee7d3 136412 dialign_2.2.1-10_armhf.deb
Files:
aec0d241ef7650e93888854da87d4087 69616 debug optional dialign-dbgsym_2.2.1-10_armhf.deb
4c14dd0b8d4d1f0a20c011243ef51599 4473 science optional dialign_2.2.1-10_armhf.buildinfo
4c88669a1139a67aa0d33823160b8e87 136412 science optional dialign_2.2.1-10_armhf.deb
Mon May 25 18:02:28 UTC 2020 I: diffoscope 145 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/b1/dialign_2.2.1-10_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/b2/dialign_2.2.1-10_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.760s)
0.760s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.196s)
0.196s 10 calls diffoscope.comparators.binary.FilesystemFile
Mon May 25 18:02:31 UTC 2020 I: diffoscope 145 found no differences in the changes files, and a .buildinfo file also exists.
Mon May 25 18:02:31 UTC 2020 I: dialign from buster built successfully and reproducibly on armhf.
Mon May 25 18:02:32 UTC 2020 I: Submitting .buildinfo files to external archives:
Mon May 25 18:02:32 UTC 2020 I: Submitting 8.0K b1/dialign_2.2.1-10_armhf.buildinfo.asc
Mon May 25 18:02:35 UTC 2020 I: Submitting 8.0K b2/dialign_2.2.1-10_armhf.buildinfo.asc
Mon May 25 18:02:36 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon May 25 18:02:36 UTC 2020 I: Done submitting .buildinfo files.
Mon May 25 18:02:36 UTC 2020 I: Removing signed dialign_2.2.1-10_armhf.buildinfo.asc files:
removed './b1/dialign_2.2.1-10_armhf.buildinfo.asc'
removed './b2/dialign_2.2.1-10_armhf.buildinfo.asc'