Sun Aug 9 03:26:28 UTC 2020 I: starting to build kalign/buster/armhf on jenkins on '2020-08-09 03:26' Sun Aug 9 03:26:28 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_21/13613/console.log Sun Aug 9 03:26:28 UTC 2020 I: Downloading source for buster/kalign=1:2.03+20110620-5 --2020-08-09 03:26:29-- http://deb.debian.org/debian/pool/main/k/kalign/kalign_2.03+20110620-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2013 (2.0K) Saving to: ‘kalign_2.03+20110620-5.dsc’ 0K . 100% 262M=0s 2020-08-09 03:26:29 (262 MB/s) - ‘kalign_2.03+20110620-5.dsc’ saved [2013/2013] Sun Aug 9 03:26:29 UTC 2020 I: kalign_2.03+20110620-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kalign Binary: kalign Architecture: any Version: 1:2.03+20110620-5 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://msa.sbc.su.se/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/kalign Vcs-Git: https://salsa.debian.org/med-team/kalign.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: kalign deb science optional arch=any Checksums-Sha1: 8bf4c1afe90e8d529840c0906c7b740299fe4041 111456 kalign_2.03+20110620.orig.tar.gz 31f967dd4928382981e5cf6e51a02dceaaa0c014 7876 kalign_2.03+20110620-5.debian.tar.xz Checksums-Sha256: 8cf20ac4e1807dc642e7ffba8f42a117313beccaee4f87c5555d53a2eeac4cbb 111456 kalign_2.03+20110620.orig.tar.gz d08d01823c95e32273f5254062653ef95ef851a08901d5ab163e4fc69b6805ee 7876 kalign_2.03+20110620-5.debian.tar.xz Files: bde173eb65e617ed73cd78bad7f881a3 111456 kalign_2.03+20110620.orig.tar.gz 518ae6c583e9c949682511c43f4e4ad0 7876 kalign_2.03+20110620-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw0nYsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEnwBAAipHNNHuC3i4whATfQnzDLIHH8oOy+RKK ZPNWdjh1XnoNaQdyBrTIGx7KQst1e52UvzDsl340AdFufgzHrctSMxGSJfDJlphQ yRWHz3O2q6QL4B9qocJr2OTivHJ0PjT5NctwOmfYAR7uKVJbQMEAg/Kd3+pYcFYO HvQk24n2gIWKzLR4r8bIXd8VpQ1AyaTl0hZOM2xK0KAMdpgK0aBXAxDTTpkHbMfy Wcq6oVvyQ1CGfwiDYToDIxwQ6ae0HXpbtW8VXcc71gaZmFXAK2OuMftagtS6fn33 epsotbKpu+cUWj9ealbaX0740LNozS7QjTBpEPfZL3SCjdyZUkiYTlpoM6+vbf2a VJWUsJI8R0sOlQSEE49AI/pER1sq+9p2y7Sq7tH/0UFW0VblmehOgcyC2XQ5x9zt vB43OEFjftDstH7QA9Xpm+4vp2m01kjax1DCFqkHft2AdKXjUeIAQQwUx8sRKp50 3qAV8M5dZwF37JO7HOQfdHci01nzLgWiyHirrjV4qYDLbfgFZaXSbTqSq6y8AfQ6 6uoJzZfi2ieMR8aMg6/nVBA/wFf40kmfDO1xubDFTcRJQPBWhYNrXSGSg16X3hL7 9F3Vgp7Iwe906YiTZSvmMhs63iBEWgy9ua7uQcQMYqGQ30J2Ac2s9UONqjHQ98Xl 10xlgRUv+jY= =VxVs -----END PGP SIGNATURE----- Sun Aug 9 03:26:29 UTC 2020 I: Checking whether the package is not for us Sun Aug 9 03:26:29 UTC 2020 I: Starting 1st build on remote node odxu4a-armhf-rb.debian.net. Sun Aug 9 03:26:29 UTC 2020 I: Preparing to do remote build '1' on odxu4a-armhf-rb.debian.net. Sun Aug 9 03:27:58 UTC 2020 I: Deleting $TMPDIR on odxu4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 8 15:26:36 -12 2020 I: pbuilder-time-stamp: 1596943596 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kalign_2.03+20110620-5.dsc] I: copying [./kalign_2.03+20110620.orig.tar.gz] I: copying [./kalign_2.03+20110620-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 8 00:54:35 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kalign_2.03+20110620-5.dsc dpkg-source: info: extracting kalign in kalign-2.03+20110620 dpkg-source: info: unpacking kalign_2.03+20110620.orig.tar.gz dpkg-source: info: unpacking kalign_2.03+20110620-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10600/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6f556c05519e49068746dc9a970e9673' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10600' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/pbuilderrc_kIPd --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/b1 --logfile b1/build.log kalign_2.03+20110620-5.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux odxu4a 5.7.0-0.bpo.2-armmp-lpae #1 SMP Debian 5.7.10-1~bpo10+1 (2020-07-30) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 5 20:26 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/10600/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 18.2 MB in 2s (11.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/kalign-2.03+20110620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:2.03+20110620-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for an ANSI C-conforming const... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build make -j5 make[1]: Entering directory '/build/kalign-2.03+20110620' gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_distance_calculation.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_dp.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_input.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_main.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_mem.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_inferface.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_misc.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_tree.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_profile.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_alignment_types.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_feature.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_hirschberg.c kalign2_tree.c: In function 'find_best_topology': kalign2_tree.c:453:13: warning: argument 1 value '4294967284' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] tmp_tree = malloc(sizeof(int)*(local_ntree+local_ntree-1)*3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kalign2.h:27, from kalign2_tree.c:26: /usr/include/stdlib.h:539:14: note: in a call to allocation function 'malloc' declared here extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur; ^~~~~~ gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_advanced_gaps.c kalign2_feature.c: In function 'feature_hirsch_align_two_pp_vector': kalign2_feature.c:436:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_ss_vector': kalign2_hirschberg.c:335:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_ps_vector': kalign2_hirschberg.c:908:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_pp_vector': kalign2_hirschberg.c:1501:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_advanced_gaps.c: In function 'advanced_hirsch_align_two_pp_vector': kalign2_advanced_gaps.c:427:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_hirschberg_dna.c kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ss_vector': kalign2_hirschberg_dna.c:327:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ps_vector': kalign2_hirschberg_dna.c:875:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_pp_vector': kalign2_hirschberg_dna.c:1444:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_output.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_string_matching.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_profile_alignment.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/kalign-2.03+20110620' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/kalign-2.03+20110620' # do nothing make[1]: Leaving directory '/build/kalign-2.03+20110620' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_2.03+20110620-5_armhf.deb'. dpkg-deb: building package 'kalign' in '../kalign_2.03+20110620-5_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kalign_2.03+20110620-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10600 and its subdirectories I: Current time: Sat Aug 8 15:27:53 -12 2020 I: pbuilder-time-stamp: 1596943673 Sun Aug 9 03:28:00 UTC 2020 I: 1st build successful. Starting 2nd build on remote node opi2a-armhf-rb.debian.net. Sun Aug 9 03:28:00 UTC 2020 I: Preparing to do remote build '2' on opi2a-armhf-rb.debian.net. Sun Aug 9 03:31:52 UTC 2020 I: Deleting $TMPDIR on opi2a-armhf-rb.debian.net. Sun Aug 9 03:31:54 UTC 2020 I: kalign_2.03+20110620-5_armhf.changes: Format: 1.8 Date: Tue, 08 Jan 2019 13:51:16 +0100 Source: kalign Binary: kalign kalign-dbgsym Architecture: armhf Version: 1:2.03+20110620-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kalign - Global and progressive multiple sequence alignment Changes: kalign (1:2.03+20110620-5) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Andreas Tille ] * Fake watch file * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 Checksums-Sha1: 22262c8d79cd1cbae71083164f4f49801dac6334 165808 kalign-dbgsym_2.03+20110620-5_armhf.deb 03e93e8f8485bc2e87889b1a6db4f4e423258fb5 4571 kalign_2.03+20110620-5_armhf.buildinfo 233ea704791d7fd6616bc4b9660c1d9cee0319e5 71856 kalign_2.03+20110620-5_armhf.deb Checksums-Sha256: 8971f4b53b676ae824f2e137d4fa418a674768d1eb399106fa6e324b59f9d30d 165808 kalign-dbgsym_2.03+20110620-5_armhf.deb 17d9f5a2ce9e25ed5a348575080fa7f16d8cea9be24d6b44ff90de4e1d9971c9 4571 kalign_2.03+20110620-5_armhf.buildinfo 653b1ab7aaf55fa2ff37a908a26354141c1c581898d3fdf9955d1f4d60dbff94 71856 kalign_2.03+20110620-5_armhf.deb Files: e969a540dc4b46c8709853dbecff6796 165808 debug optional kalign-dbgsym_2.03+20110620-5_armhf.deb b84467f4ab094ae866bc91da72179dab 4571 science optional kalign_2.03+20110620-5_armhf.buildinfo da975d5a89330f45f2619afbbe0fa52d 71856 science optional kalign_2.03+20110620-5_armhf.deb Sun Aug 9 03:31:55 UTC 2020 I: diffoscope 155 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/kalign_2.03+20110620-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/kalign_2.03+20110620-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/kalign_2.03+20110620-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/b1/kalign_2.03+20110620-5_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.fbIkEeClBM/b2/kalign_2.03+20110620-5_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.241s) 0.241s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Aug 9 03:31:57 UTC 2020 I: diffoscope 155 found no differences in the changes files, and a .buildinfo file also exists. Sun Aug 9 03:31:57 UTC 2020 I: kalign from buster built successfully and reproducibly on armhf. Sun Aug 9 03:31:58 UTC 2020 I: Submitting .buildinfo files to external archives: Sun Aug 9 03:31:58 UTC 2020 I: Submitting 8.0K b1/kalign_2.03+20110620-5_armhf.buildinfo.asc Sun Aug 9 03:32:00 UTC 2020 I: Submitting 8.0K b2/kalign_2.03+20110620-5_armhf.buildinfo.asc Sun Aug 9 03:32:02 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Aug 9 03:32:02 UTC 2020 I: Done submitting .buildinfo files. Sun Aug 9 03:32:02 UTC 2020 I: Removing signed kalign_2.03+20110620-5_armhf.buildinfo.asc files: removed './b1/kalign_2.03+20110620-5_armhf.buildinfo.asc' removed './b2/kalign_2.03+20110620-5_armhf.buildinfo.asc'