Mon May 25 14:42:17 UTC 2020 I: starting to build libbio-coordinate-perl/buster/armhf on jenkins on '2020-05-25 14:42' Mon May 25 14:42:17 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_48/1741/console.log Mon May 25 14:42:17 UTC 2020 I: Downloading source for buster/libbio-coordinate-perl=1.7.1-3 --2020-05-25 14:42:17-- http://deb.debian.org/debian/pool/main/libb/libbio-coordinate-perl/libbio-coordinate-perl_1.7.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2166 (2.1K) Saving to: ‘libbio-coordinate-perl_1.7.1-3.dsc’ 0K .. 100% 164M=0s 2020-05-25 14:42:17 (164 MB/s) - ‘libbio-coordinate-perl_1.7.1-3.dsc’ saved [2166/2166] Mon May 25 14:42:17 UTC 2020 I: libbio-coordinate-perl_1.7.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all Version: 1.7.1-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://metacpan.org/release/Bio-Coordinate Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-coordinate-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 11~) Build-Depends-Indep: bioperl (>= 1.7.1), perl Package-List: libbio-coordinate-perl deb perl optional arch=all Checksums-Sha1: c6c03b7406c85c7fca0e8488635d933089449967 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz 6e49e239c69238500a6492d4159fa50e8640b01b 2656 libbio-coordinate-perl_1.7.1-3.debian.tar.xz Checksums-Sha256: 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz c4b665983e451b3e97d03912d72a112fe98377a54a0ebc788c7c0e6e7e570d83 2656 libbio-coordinate-perl_1.7.1-3.debian.tar.xz Files: 7353a7d2f672a69f573aa08b86b4ddab 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz df2b60a3736945559ee8bebe1c5b1f4e 2656 libbio-coordinate-perl_1.7.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAluoyx8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGh4BAAhdj+Su2Mn1yxWdbleN4r8dC3PbYWC467 wovNsblozOy7fBpUV/8jRHKZguAk8G1o0nqqzvSVXODUHSj0F9IzPEfn4EfzPDTJ 0FZCT5sif7xP+Rd3/WPEJQCuROFJuTRNsww9I1zaM58pzpj4aogpxLyvwsLAKnmH BUfOyrYKSbmXEz+GRuFVC7jnCctDpcqUG0M8tKwrYwQ1YLwzuZ3jCD3gjceLf4t9 rull5EW7+TsEberv1purpzfDnZ8PdZUSVBXODmGcxNNyB4/+DQMhq9ZVeRqlh8sp KrsIBqvBaMUE2kAlsoOwXz4HSSndaZSHkk7CsFWlmsRgchfvbdJWAAU8gTmYCe5y W7XhVujfr0OxXnLDNPXB9BUbMaoXu2oKmI8IWaxFcB6cW8yZ0GsM0DeiBRZPEFUw gjEqficTBz0v3AUJ3Nl0cCxdguvxGfDT3X2n0NYtn2XfGjHQI9dmCCL5wm53pjyh owFSTda2kA0p8xpgboCTLxC8l42BqZ9GhElgu8DiZcQ1XtOVZYb7/7VuzR8BiM5J 1ZbFPX1t8rKEyvHJZON4WSjK1vPnMqXdSj3o4qPuS6vw/Nzf+CTsHAyHxdjRKyq6 5HfnQ08403a0Sm8QF7Xwm/LHxcPCzOcgABXtxLhHXP+bMdDsbfq21LyWnmnaZBwf jkEpVbBn8Fg= =zuos -----END PGP SIGNATURE----- Mon May 25 14:42:17 UTC 2020 I: Checking whether the package is not for us Mon May 25 14:42:18 UTC 2020 I: Starting 1st build on remote node jtx1a-armhf-rb.debian.net. Mon May 25 14:42:18 UTC 2020 I: Preparing to do remote build '1' on jtx1a-armhf-rb.debian.net. Mon May 25 14:43:57 UTC 2020 I: Deleting $TMPDIR on jtx1a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 25 02:42:24 -12 2020 I: pbuilder-time-stamp: 1590417744 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-coordinate-perl_1.7.1-3.dsc] I: copying [./libbio-coordinate-perl_1.7.1.orig.tar.gz] I: copying [./libbio-coordinate-perl_1.7.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Sep 23 23:31:43 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-coordinate-perl_1.7.1-3.dsc dpkg-source: info: extracting libbio-coordinate-perl in libbio-coordinate-perl-1.7.1 dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), bioperl (>= 1.7.1), perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.1); however: Package bioperl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbsd0{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libcroco3{a} libdata-stag-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libio-string-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 24.0 MB of archives. After unpacking 81.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libio-string-perl all 1.08-3 [12.3 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libdata-stag-perl all 0.14-2 [448 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libbio-perl-perl all 1.7.2-3 [4553 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 22 http://deb.debian.org/debian buster/main armhf libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libexception-class-perl all 1.44-1 [32.3 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libtest-deep-perl all 1.128-1 [48.8 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libtext-diff-perl all 1.45-1 [27.7 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libtest-differences-perl all 0.65-1 [18.1 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libtest-exception-perl all 0.43-1 [18.7 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libtest-warn-perl all 0.36-1 [16.2 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libtest-most-perl all 0.35-1 [24.5 kB] Get: 33 http://deb.debian.org/debian buster/main armhf bioperl all 1.7.2-3 [418 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 35 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 38 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 40 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 46 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 47 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 49 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 24.0 MB in 5s (4924 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libtest-differences-perl (0.65-1) ... Setting up m4 (1.4.18-2) ... Setting up libexception-class-perl (1.44-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libtest-most-perl (0.35-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bioperl (1.7.2-3) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build make -j3 make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1' cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm Manifying 13 pod documents make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1' dh_auto_test make -j3 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..13 ok 1 - Bio/Coordinate.pm loaded ok ok 2 - Bio/Coordinate/Chain.pm loaded ok ok 3 - Bio/Coordinate/Collection.pm loaded ok ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok ok 6 - Bio/Coordinate/Graph.pm loaded ok ok 7 - Bio/Coordinate/MapperI.pm loaded ok ok 8 - Bio/Coordinate/Pair.pm loaded ok ok 9 - Bio/Coordinate/Result.pm loaded ok ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok ok 11 - Bio/Coordinate/Result/Match.pm loaded ok ok 12 - Bio/Coordinate/ResultI.pm loaded ok ok 13 - Bio/Coordinate/Utils.pm loaded ok ok t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/CoordinateBoundaryTest.t .. 1..174 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 5 ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 7 ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 9 ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 11 ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 33 ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 35 ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 51 ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 53 ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 69 ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 71 ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 89 ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 91 ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 109 ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 111 ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 113 ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 115 ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 133 ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 143 ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 153 ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 165 ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok t/CoordinateGraph.t ......... 1..7 ok 1 - use Bio::Coordinate::Graph; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/CoordinateMapper.t ........ 1..175 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::Result::Match; ok 4 - use Bio::Coordinate::Result::Gap; ok 5 - use Bio::Coordinate::Chain; ok 6 - use Bio::Coordinate::Collection; ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI' ok 16 ok 17 ok 18 ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI' ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap' ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 - Match: |314696| Test: 314696| ok 139 ok 140 ok 141 ok 142 - Match: |341| Test: 341| ok 143 ok 144 ok 145 ok 146 - Match: |315843| Test: 315843| ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - Match: |627011| Test: 627011| ok 153 ok 154 ok 155 ok 156 - Match: |chr1| Test: chr1| ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok t/GeneCoordinateMapper.t .... 1..116 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::ExtrapolatingPair; ok 4 - use Bio::Coordinate::GeneMapper; ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. Files=8, Tests=485, 5 wallclock secs ( 0.18 usr 0.04 sys + 4.52 cusr 0.24 csys = 4.98 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j3 install DESTDIR=/build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-coordinate-perl-1.7.1' Manifying 13 pod documents Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /build/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm make[1]: Leaving directory '/build/libbio-coordinate-perl-1.7.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbio-coordinate-perl_1.7.1-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12422 and its subdirectories I: Current time: Mon May 25 02:43:52 -12 2020 I: pbuilder-time-stamp: 1590417832 Mon May 25 14:43:59 UTC 2020 I: 1st build successful. Starting 2nd build on remote node odxu4a-armhf-rb.debian.net. Mon May 25 14:43:59 UTC 2020 I: Preparing to do remote build '2' on odxu4a-armhf-rb.debian.net. Mon May 25 14:45:28 UTC 2020 I: Deleting $TMPDIR on odxu4a-armhf-rb.debian.net. Mon May 25 14:45:30 UTC 2020 I: libbio-coordinate-perl_1.7.1-3_armhf.changes: Format: 1.8 Date: Mon, 24 Sep 2018 13:07:25 +0200 Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all Version: 1.7.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-coordinate-perl - BioPerl modules for working with biological coordinates Changes: libbio-coordinate-perl (1.7.1-3) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * s/Conflicts/Breaks/ * Fix spelling Checksums-Sha1: 9eb8671d778e60e9a206784b79cf62f790469211 56616 libbio-coordinate-perl_1.7.1-3_all.deb 58a13b302d112802616b04f2b9bdc47f01716bd1 4829 libbio-coordinate-perl_1.7.1-3_armhf.buildinfo Checksums-Sha256: 79c06a42ec3443631b8f902492c59ebf3398cf21249e48a7aede5f6220b78db5 56616 libbio-coordinate-perl_1.7.1-3_all.deb 5452543806878960cf5f91185f9a107d4eb64fc04fb9e00b00bc7bbc2866cdac 4829 libbio-coordinate-perl_1.7.1-3_armhf.buildinfo Files: fd1248abc32a3d58fa8a27a89c4d5d39 56616 perl optional libbio-coordinate-perl_1.7.1-3_all.deb 5d458a53fff8cfaced4eadee634868d5 4829 perl optional libbio-coordinate-perl_1.7.1-3_armhf.buildinfo Mon May 25 14:45:32 UTC 2020 I: diffoscope 145 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.YKiJM4CwZu/libbio-coordinate-perl_1.7.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.YKiJM4CwZu/libbio-coordinate-perl_1.7.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.YKiJM4CwZu/libbio-coordinate-perl_1.7.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.YKiJM4CwZu/b1/libbio-coordinate-perl_1.7.1-3_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.YKiJM4CwZu/b2/libbio-coordinate-perl_1.7.1-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.490s) 0.490s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.072s) 0.072s 10 calls diffoscope.comparators.binary.FilesystemFile Mon May 25 14:45:35 UTC 2020 I: diffoscope 145 found no differences in the changes files, and a .buildinfo file also exists. Mon May 25 14:45:35 UTC 2020 I: libbio-coordinate-perl from buster built successfully and reproducibly on armhf. Mon May 25 14:45:36 UTC 2020 I: Submitting .buildinfo files to external archives: Mon May 25 14:45:36 UTC 2020 I: Submitting 8.0K b1/libbio-coordinate-perl_1.7.1-3_armhf.buildinfo.asc Mon May 25 14:45:38 UTC 2020 I: Submitting 8.0K b2/libbio-coordinate-perl_1.7.1-3_armhf.buildinfo.asc Mon May 25 14:45:39 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 25 14:45:39 UTC 2020 I: Done submitting .buildinfo files. Mon May 25 14:45:39 UTC 2020 I: Removing signed libbio-coordinate-perl_1.7.1-3_armhf.buildinfo.asc files: removed './b1/libbio-coordinate-perl_1.7.1-3_armhf.buildinfo.asc' removed './b2/libbio-coordinate-perl_1.7.1-3_armhf.buildinfo.asc'