Sun Jul 12 01:18:58 UTC 2020 I: starting to build libfastahack/buster/armhf on jenkins on '2020-07-12 01:18'
Sun Jul 12 01:18:58 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_42/4217/console.log
Sun Jul 12 01:18:58 UTC 2020 I: Downloading source for buster/libfastahack=0.0+git20160702.bbc645f+dfsg-6
--2020-07-12 01:18:59-- http://deb.debian.org/debian/pool/main/libf/libfastahack/libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2273 (2.2K)
Saving to: ‘libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc’
0K .. 100% 164M=0s
2020-07-12 01:18:59 (164 MB/s) - ‘libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc’ saved [2273/2273]
Sun Jul 12 01:18:59 UTC 2020 I: libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: libfastahack
Binary: libfastahack0, libfastahack-dev, fastahack
Architecture: any
Version: 0.0+git20160702.bbc645f+dfsg-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/ekg/fastahack
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/libfastahack
Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git
Build-Depends: debhelper (>= 11~), d-shlibs, libdisorder-dev
Package-List:
fastahack deb science optional arch=any
libfastahack-dev deb libdevel optional arch=any
libfastahack0 deb libs optional arch=any
Checksums-Sha1:
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18c1833068af980efa20f57a7b0a5e43ed7aa11f 6204 libfastahack_0.0+git20160702.bbc645f+dfsg-6.debian.tar.xz
Checksums-Sha256:
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b12cd5074f86b63aa16a88b3114ed028 6204 libfastahack_0.0+git20160702.bbc645f+dfsg-6.debian.tar.xz
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Sun Jul 12 01:18:59 UTC 2020 I: Checking whether the package is not for us
Sun Jul 12 01:18:59 UTC 2020 I: Starting 1st build on remote node cbxi4b-armhf-rb.debian.net.
Sun Jul 12 01:18:59 UTC 2020 I: Preparing to do remote build '1' on cbxi4b-armhf-rb.debian.net.
Sun Jul 12 01:23:01 UTC 2020 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sat Jul 11 13:19:11 -12 2020
I: pbuilder-time-stamp: 1594516751
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc]
I: copying [./libfastahack_0.0+git20160702.bbc645f+dfsg.orig.tar.xz]
I: copying [./libfastahack_0.0+git20160702.bbc645f+dfsg-6.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Dec 2 03:35:51 2018 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc
dpkg-source: info: extracting libfastahack in libfastahack-0.0+git20160702.bbc645f+dfsg
dpkg-source: info: unpacking libfastahack_0.0+git20160702.bbc645f+dfsg.orig.tar.xz
dpkg-source: info: unpacking libfastahack_0.0+git20160702.bbc645f+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying autoconf.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/24117/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='84a65eaa0f534498b2f1a41ac740d8d9'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='24117'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/pbuilderrc_VAhP --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/b1 --logfile b1/build.log libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc'
SUDO_GID='116'
SUDO_UID='112'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux cbxi4b 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux
I: ls -l /bin
total 3328
-rwxr-xr-x 1 root root 767656 Apr 17 2019 bash
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2
-rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
-rwxr-xr-x 1 root root 22432 Feb 28 2019 cat
-rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp
-rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod
-rwxr-xr-x 1 root root 42972 Feb 28 2019 chown
-rwxr-xr-x 1 root root 88376 Feb 28 2019 cp
-rwxr-xr-x 1 root root 75516 Jan 17 2019 dash
-rwxr-xr-x 1 root root 71648 Feb 28 2019 date
-rwxr-xr-x 1 root root 51212 Feb 28 2019 dd
-rwxr-xr-x 1 root root 55672 Feb 28 2019 df
-rwxr-xr-x 1 root root 88444 Feb 28 2019 dir
-rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg
lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
-rwxr-xr-x 1 root root 22364 Feb 28 2019 echo
-rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
-rwxr-xr-x 1 root root 18260 Feb 28 2019 false
-rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
-rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt
-rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount
-rwxr-xr-x 1 root root 124508 Jan 7 2019 grep
-rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
-rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
-rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip
-rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname
-rwxr-xr-x 1 root root 43044 Feb 28 2019 ln
-rwxr-xr-x 1 root root 34932 Jul 26 2018 login
-rwxr-xr-x 1 root root 88444 Feb 28 2019 ls
-rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk
-rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir
-rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod
-rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp
-rwxr-xr-x 1 root root 26024 Jan 9 2019 more
-rwsr-xr-x 1 root root 34268 Jan 9 2019 mount
-rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint
-rwxr-xr-x 1 root root 84284 Feb 28 2019 mv
lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd
lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
-rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink
-rwxr-xr-x 1 root root 42968 Feb 28 2019 rm
-rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir
-rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 9 20:27 sh -> dash
-rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep
-rwxr-xr-x 1 root root 51124 Feb 28 2019 stty
-rwsr-xr-x 1 root root 42472 Jan 9 2019 su
-rwxr-xr-x 1 root root 22392 Feb 28 2019 sync
-rwxr-xr-x 1 root root 283324 Apr 23 2019 tar
-rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile
-rwxr-xr-x 1 root root 63464 Feb 28 2019 touch
-rwxr-xr-x 1 root root 18260 Feb 28 2019 true
-rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server
-rwsr-xr-x 1 root root 21976 Jan 9 2019 umount
-rwxr-xr-x 1 root root 22380 Feb 28 2019 uname
-rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
-rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir
-rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl
-rwxr-xr-x 1 root root 946 Jan 21 2019 which
lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
-rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
-rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
-rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
-rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
-rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
-rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
-rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
-rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
-rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
I: user script /srv/workspace/pbuilder/24117/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11~), d-shlibs, libdisorder-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on libdisorder-dev; however:
Package libdisorder-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libdisorder-dev{a} libdisorder0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf d-shlibs all 0.84 [17.2 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 34 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Get: 35 http://deb.debian.org/debian buster/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-1 [4540 B]
Get: 36 http://deb.debian.org/debian buster/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-1 [4092 B]
Fetched 18.2 MB in 9s (1985 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:armhf.
(Reading database ...
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(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic-mgc (1:5.35-4+deb10u1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ...
Selecting previously unselected package file.
Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ...
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fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/libfastahack-0.0+git20160702.bbc645f+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package libfastahack
dpkg-buildpackage: info: source version 0.0+git20160702.bbc645f+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
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libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
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checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
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checking whether GID '1111' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
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checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 11509: AX_CXXFLAGS: command not found
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build
make -j3
make[1]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
make all-am
make[2]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o
Fasta.cpp: In function 'std::ostream& operator<<(std::ostream&, FastaIndex&)':
Fasta.cpp:90:1: warning: no return statement in function returning non-void [-Wreturn-type]
}
^
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1
In file included from /usr/include/c++/8/map:60,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_map.h: In member function 'std::__cxx11::string FastaReference::sequenceNameStartingWith(std::__cxx11::string)':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:69,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const FastaIndexEntry&}; _Tp = FastaIndexEntry; _Alloc = std::allocator<FastaIndexEntry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<FastaIndexEntry>::iterator' {aka '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<FastaIndexEntry>::iterator' {aka '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_val<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Distance = int; _Tp = FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(FastaIndexEntry, FastaIndexEntry)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from Fasta.h:12,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_map.h: In function 'std::ostream& operator<<(std::ostream&, FastaIndex&)':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, FastaIndexEntry> >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:64,
from Fasta.h:15,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from Fasta.h:18,
from Fasta.cpp:9:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<FastaIndexEntry*, std::vector<FastaIndexEntry> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/arm-linux-gnueabihf libfastahack_la-Fasta.lo libfastahack_la-split.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0")
libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so")
libtool: link: ar cru .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libfastahack.a
libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/libfastahack-0.0+git20160702.bbc645f+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder
make[2]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
make[1]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
dh_auto_test
make -j3 check VERBOSE=1
make[1]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
make[1]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_auto_install
make -j1 install DESTDIR=/build/libfastahack-0.0\+git20160702.bbc645f\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
make[2]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
/bin/mkdir -p '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0
libtool: install: (cd /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; })
libtool: install: (cd /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; })
libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.la
libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: chmod 644 /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: install: ranlib /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/bin'
libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/fastahack /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/bin/fastahack
/bin/mkdir -p '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/include/fastahack'
/usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/include/fastahack'
/bin/mkdir -p '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libfastahack.pc '/build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
make[1]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.a debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf
mv /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
mv /build/libfastahack-0.0+git20160702.bbc645f+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/arm-linux-gnueabihf
PKGDEV=libfastahack-dev
PKGSHL=libfastahack0
install -d -m 755 debian/libfastahack-dev/usr/include
mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include
install -d -m 755 debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_strip
debian/rules override_dh_makeshlibs
make[1]: Entering directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
echo "Symbols file for architecture armhf is not provided"
Symbols file for architecture armhf is not provided
mkdir -p debian/hidesymbols
mv debian/*.symbols debian/hidesymbols
dh_makeshlibs
# restore original debian/ dir to enable building twice in a row
mv debian/hidesymbols/*.symbols debian
rmdir debian/hidesymbols
make[1]: Leaving directory '/build/libfastahack-0.0+git20160702.bbc645f+dfsg'
dh_shlibdeps
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libfastahack0/usr/lib/arm-linux-gnueabihf/libfastahack.so.0.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/fastahack/usr/bin/fastahack contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package libfastahack-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libfastahack0' in '../libfastahack0_0.0+git20160702.bbc645f+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_armhf.deb'.
dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb'.
dpkg-deb: building package 'fastahack' in '../fastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/24117 and its subdirectories
I: Current time: Sat Jul 11 13:22:49 -12 2020
I: pbuilder-time-stamp: 1594516969
Sun Jul 12 01:23:06 UTC 2020 I: 1st build successful. Starting 2nd build on remote node bbx15-armhf-rb.debian.net.
Sun Jul 12 01:23:06 UTC 2020 I: Preparing to do remote build '2' on bbx15-armhf-rb.debian.net.
Sun Jul 12 01:26:00 UTC 2020 I: Deleting $TMPDIR on bbx15-armhf-rb.debian.net.
Sun Jul 12 01:26:05 UTC 2020 I: libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.changes:
Format: 1.8
Date: Sun, 02 Dec 2018 16:32:55 +0100
Source: libfastahack
Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym
Architecture: armhf
Version: 0.0+git20160702.bbc645f+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files (li
Closes: 915271
Changes:
libfastahack (0.0+git20160702.bbc645f+dfsg-6) unstable; urgency=medium
.
* Set some symbols optional to make build more robust
Closes: #915271
* Secure URI in copyright format
Checksums-Sha1:
6f238c29f1d345186f94015c0d25be4b55e5de7e 80772 fastahack-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
83873069f926fdd909fbf26e00133f63a23b6136 10016 fastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
87faa02b25c46ca5adde50a2d6868aef41b84604 23428 libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
3ea5c0e42beff2b5b1c98d119b79c45bd1c5c6e1 228884 libfastahack0-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
ec03de6b29570016bff190b0f53f2768f1a43fe5 20852 libfastahack0_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
4acfdcec6e381d1a7425c04f50d0baf3a94be109 6259 libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo
Checksums-Sha256:
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078902dcd379098b94c37e7d0fd7570466d69309bb229a082ac4072c8a4f9b06 10016 fastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
54df2fd8455e52259269f3995603d7c0d83992197cd92411fe7e3fdc95f97f4e 23428 libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
3963014d793a1099f5bb41adb6fad9ce5037f845bf2245312c92a1bb1b76368e 228884 libfastahack0-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
2f1ab8943b658e61aa56173b9fa8d62cb5f16b9948b883f6cb3f3d525d51ac5f 20852 libfastahack0_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
97b2368b5b9c51fb12d644a29402109484653967bad4f221b5c5bd9e9bd7b818 6259 libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo
Files:
ff7e7f5fe7bdd4dd511e33d075df23d7 80772 debug optional fastahack-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
7dc0b25e625aa3332571c3d6e5aa6800 10016 science optional fastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
91ebc9b09f59801416546212a653032c 23428 libdevel optional libfastahack-dev_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
106c6dc9359176f7539d3008149917d4 228884 debug optional libfastahack0-dbgsym_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
762590e8ebb1a42d5b6562c389a4ae18 20852 libs optional libfastahack0_0.0+git20160702.bbc645f+dfsg-6_armhf.deb
8592b3d3e1cb2d76be10a0fb92f5bfcf 6259 science optional libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo
Sun Jul 12 01:26:17 UTC 2020 I: diffoscope 151 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/libfastahack_0.0+git20160702.bbc645f+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/libfastahack_0.0+git20160702.bbc645f+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/libfastahack_0.0+git20160702.bbc645f+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/b1/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.Iegxk8N9Lt/b2/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.260s)
0.260s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.033s)
0.033s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Sun Jul 12 01:26:43 UTC 2020 I: diffoscope 151 found no differences in the changes files, and a .buildinfo file also exists.
Sun Jul 12 01:26:43 UTC 2020 I: libfastahack from buster built successfully and reproducibly on armhf.
Sun Jul 12 01:26:44 UTC 2020 I: Submitting .buildinfo files to external archives:
Sun Jul 12 01:26:44 UTC 2020 I: Submitting 8.0K b1/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo.asc
Sun Jul 12 01:26:45 UTC 2020 I: Submitting 8.0K b2/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo.asc
Sun Jul 12 01:26:46 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Jul 12 01:26:46 UTC 2020 I: Done submitting .buildinfo files.
Sun Jul 12 01:26:46 UTC 2020 I: Removing signed libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo.asc files:
removed './b1/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo.asc'
removed './b2/libfastahack_0.0+git20160702.bbc645f+dfsg-6_armhf.buildinfo.asc'