Sun Jul 12 21:00:40 UTC 2020  I: starting to build phyml/buster/armhf on jenkins on '2020-07-12 21:00'
Sun Jul 12 21:00:40 UTC 2020  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/5220/console.log
Sun Jul 12 21:00:40 UTC 2020  I: Downloading source for buster/phyml=3:3.3.20180621-2
--2020-07-12 21:00:41--  http://deb.debian.org/debian/pool/main/p/phyml/phyml_3.3.20180621-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2064 (2.0K)
Saving to: ‘phyml_3.3.20180621-2.dsc’

     0K ..                                                    100% 12.1M=0s

2020-07-12 21:00:41 (12.1 MB/s) - ‘phyml_3.3.20180621-2.dsc’ saved [2064/2064]

Sun Jul 12 21:00:41 UTC 2020  I: phyml_3.3.20180621-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: phyml
Binary: phyml
Architecture: any
Version: 3:3.3.20180621-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>, Kevin Murray <spam@kdmurray.id.au>
Homepage: http://www.atgc-montpellier.fr/phyml
Standards-Version: 4.1.4
Vcs-Browser: https://salsa.debian.org/med-team/phyml
Vcs-Git: https://salsa.debian.org/med-team/phyml.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11~), pkg-config, libopenmpi-dev, chrpath
Package-List:
 phyml deb science optional arch=any
Checksums-Sha1:
 2fb61293e900e62af0c9c55af72dae5905ddd8e0 2306290 phyml_3.3.20180621.orig.tar.gz
 dfa6766af7418f4daf74136b28a8da05889ceccf 16868 phyml_3.3.20180621-2.debian.tar.xz
Checksums-Sha256:
 a66c1c5758408578c34a17733f92db11a67aa572a06a9b5e3046009ee8bed0d3 2306290 phyml_3.3.20180621.orig.tar.gz
 1de90506bf598c98ad7ab95d586dab062d2a2f15e59e18e47fd6e7741e0287b0 16868 phyml_3.3.20180621-2.debian.tar.xz
Files:
 39f5df7eeb317466ab5724b38efb6915 2306290 phyml_3.3.20180621.orig.tar.gz
 dfeea593061288cef9af6bf00855177f 16868 phyml_3.3.20180621-2.debian.tar.xz

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Sun Jul 12 21:00:41 UTC 2020  I: Checking whether the package is not for us
Sun Jul 12 21:00:41 UTC 2020  I: Starting 1st build on remote node ff2b-armhf-rb.debian.net.
Sun Jul 12 21:00:41 UTC 2020  I: Preparing to do remote build '1' on ff2b-armhf-rb.debian.net.
Sun Jul 12 21:04:26 UTC 2020  I: Deleting $TMPDIR on ff2b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Jul 12 09:00:48 -12 2020
I: pbuilder-time-stamp: 1594587648
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [phyml_3.3.20180621-2.dsc]
I: copying [./phyml_3.3.20180621.orig.tar.gz]
I: copying [./phyml_3.3.20180621-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jun 27 04:29:16 2018 -12
gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./phyml_3.3.20180621-2.dsc
dpkg-source: info: extracting phyml in phyml-3.3.20180621
dpkg-source: info: unpacking phyml_3.3.20180621.orig.tar.gz
dpkg-source: info: unpacking phyml_3.3.20180621-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying sse_only_if_supported.patch
dpkg-source: info: applying no-stdc++.patch
dpkg-source: info: applying no-configure-ac-date.patch
dpkg-source: info: applying fix_declaration_of_temp.patch
dpkg-source: info: applying fix_wrong_initialisation_of_array.patch
dpkg-source: info: applying no-march-native.patch
dpkg-source: info: applying cross.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/21090/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='armhf'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
  DISTRIBUTION=''
  HOME='/root'
  HOST_ARCH='armhf'
  IFS=' 	
  '
  INVOCATION_ID='d78147926c4a49a8a2d74ee00367d82c'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='21090'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/pbuilderrc_NMCK --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/b1 --logfile b1/build.log phyml_3.3.20180621-2.dsc'
  SUDO_GID='114'
  SUDO_UID='109'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://10.0.0.15:8000/'
I: uname -a
  Linux ff2b 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux
I: ls -l /bin
  total 3328
  -rwxr-xr-x 1 root root 767656 Apr 17  2019 bash
  -rwxr-xr-x 3 root root  26052 Jul 10  2019 bunzip2
  -rwxr-xr-x 3 root root  26052 Jul 10  2019 bzcat
  lrwxrwxrwx 1 root root      6 Jul 10  2019 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root   2227 Jul 10  2019 bzdiff
  lrwxrwxrwx 1 root root      6 Jul 10  2019 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root   4877 Jun 24  2019 bzexe
  lrwxrwxrwx 1 root root      6 Jul 10  2019 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root   3641 Jul 10  2019 bzgrep
  -rwxr-xr-x 3 root root  26052 Jul 10  2019 bzip2
  -rwxr-xr-x 1 root root   9636 Jul 10  2019 bzip2recover
  lrwxrwxrwx 1 root root      6 Jul 10  2019 bzless -> bzmore
  -rwxr-xr-x 1 root root   1297 Jul 10  2019 bzmore
  -rwxr-xr-x 1 root root  22432 Feb 28  2019 cat
  -rwxr-xr-x 1 root root  38868 Feb 28  2019 chgrp
  -rwxr-xr-x 1 root root  38836 Feb 28  2019 chmod
  -rwxr-xr-x 1 root root  42972 Feb 28  2019 chown
  -rwxr-xr-x 1 root root  88376 Feb 28  2019 cp
  -rwxr-xr-x 1 root root  75516 Jan 17  2019 dash
  -rwxr-xr-x 1 root root  71648 Feb 28  2019 date
  -rwxr-xr-x 1 root root  51212 Feb 28  2019 dd
  -rwxr-xr-x 1 root root  55672 Feb 28  2019 df
  -rwxr-xr-x 1 root root  88444 Feb 28  2019 dir
  -rwxr-xr-x 1 root root  54872 Jan  9  2019 dmesg
  lrwxrwxrwx 1 root root      8 Sep 26  2018 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root      8 Sep 26  2018 domainname -> hostname
  -rwxr-xr-x 1 root root  22364 Feb 28  2019 echo
  -rwxr-xr-x 1 root root     28 Jan  7  2019 egrep
  -rwxr-xr-x 1 root root  18260 Feb 28  2019 false
  -rwxr-xr-x 1 root root     28 Jan  7  2019 fgrep
  -rwxr-xr-x 1 root root  47356 Jan  9  2019 findmnt
  -rwsr-xr-x 1 root root  21980 Apr 22 07:38 fusermount
  -rwxr-xr-x 1 root root 124508 Jan  7  2019 grep
  -rwxr-xr-x 2 root root   2345 Jan  5  2019 gunzip
  -rwxr-xr-x 1 root root   6375 Jan  5  2019 gzexe
  -rwxr-xr-x 1 root root  64232 Jan  5  2019 gzip
  -rwxr-xr-x 1 root root  13784 Sep 26  2018 hostname
  -rwxr-xr-x 1 root root  43044 Feb 28  2019 ln
  -rwxr-xr-x 1 root root  34932 Jul 26  2018 login
  -rwxr-xr-x 1 root root  88444 Feb 28  2019 ls
  -rwxr-xr-x 1 root root  67036 Jan  9  2019 lsblk
  -rwxr-xr-x 1 root root  47168 Feb 28  2019 mkdir
  -rwxr-xr-x 1 root root  43040 Feb 28  2019 mknod
  -rwxr-xr-x 1 root root  26552 Feb 28  2019 mktemp
  -rwxr-xr-x 1 root root  26024 Jan  9  2019 more
  -rwsr-xr-x 1 root root  34268 Jan  9  2019 mount
  -rwxr-xr-x 1 root root   9688 Jan  9  2019 mountpoint
  -rwxr-xr-x 1 root root  84284 Feb 28  2019 mv
  lrwxrwxrwx 1 root root      8 Sep 26  2018 nisdomainname -> hostname
  lrwxrwxrwx 1 root root     14 Feb 14  2019 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root  22416 Feb 28  2019 pwd
  lrwxrwxrwx 1 root root      4 Apr 17  2019 rbash -> bash
  -rwxr-xr-x 1 root root  26504 Feb 28  2019 readlink
  -rwxr-xr-x 1 root root  42968 Feb 28  2019 rm
  -rwxr-xr-x 1 root root  26496 Feb 28  2019 rmdir
  -rwxr-xr-x 1 root root  14136 Jan 21  2019 run-parts
  -rwxr-xr-x 1 root root  76012 Dec 22  2018 sed
  lrwxrwxrwx 1 root root      4 Jul 10 20:26 sh -> dash
  -rwxr-xr-x 1 root root  22384 Feb 28  2019 sleep
  -rwxr-xr-x 1 root root  51124 Feb 28  2019 stty
  -rwsr-xr-x 1 root root  42472 Jan  9  2019 su
  -rwxr-xr-x 1 root root  22392 Feb 28  2019 sync
  -rwxr-xr-x 1 root root 283324 Apr 23  2019 tar
  -rwxr-xr-x 1 root root   9808 Jan 21  2019 tempfile
  -rwxr-xr-x 1 root root  63464 Feb 28  2019 touch
  -rwxr-xr-x 1 root root  18260 Feb 28  2019 true
  -rwxr-xr-x 1 root root   9636 Apr 22 07:38 ulockmgr_server
  -rwsr-xr-x 1 root root  21976 Jan  9  2019 umount
  -rwxr-xr-x 1 root root  22380 Feb 28  2019 uname
  -rwxr-xr-x 2 root root   2345 Jan  5  2019 uncompress
  -rwxr-xr-x 1 root root  88444 Feb 28  2019 vdir
  -rwxr-xr-x 1 root root  21980 Jan  9  2019 wdctl
  -rwxr-xr-x 1 root root    946 Jan 21  2019 which
  lrwxrwxrwx 1 root root      8 Sep 26  2018 ypdomainname -> hostname
  -rwxr-xr-x 1 root root   1983 Jan  5  2019 zcat
  -rwxr-xr-x 1 root root   1677 Jan  5  2019 zcmp
  -rwxr-xr-x 1 root root   5879 Jan  5  2019 zdiff
  -rwxr-xr-x 1 root root     29 Jan  5  2019 zegrep
  -rwxr-xr-x 1 root root     29 Jan  5  2019 zfgrep
  -rwxr-xr-x 1 root root   2080 Jan  5  2019 zforce
  -rwxr-xr-x 1 root root   7584 Jan  5  2019 zgrep
  -rwxr-xr-x 1 root root   2205 Jan  5  2019 zless
  -rwxr-xr-x 1 root root   1841 Jan  5  2019 zmore
  -rwxr-xr-x 1 root root   4552 Jan  5  2019 znew
I: user script /srv/workspace/pbuilder/21090/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 11~), pkg-config, libopenmpi-dev, chrpath
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on pkg-config; however:
  Package pkg-config is not installed.
 pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however:
  Package libopenmpi-dev is not installed.
 pbuilder-satisfydepends-dummy depends on chrpath; however:
  Package chrpath is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 
0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded.
Need to get 26.8 MB of archives. After unpacking 89.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf libedit2 armhf 3.1-20181209-1 [79.5 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf openssh-client armhf 1:7.9p1-10+deb10u2 [704 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf chrpath armhf 0.16-2+b1 [15.9 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 34 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 35 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 36 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 37 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 38 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 39 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 40 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 41 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 42 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Get: 43 http://deb.debian.org/debian buster/main armhf libnl-3-200 armhf 3.4.0-1 [55.6 kB]
Get: 44 http://deb.debian.org/debian buster/main armhf libnl-route-3-200 armhf 3.4.0-1 [136 kB]
Get: 45 http://deb.debian.org/debian buster/main armhf libibverbs1 armhf 22.1-1 [44.1 kB]
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Get: 50 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB]
Get: 51 http://deb.debian.org/debian buster/main armhf libltdl7 armhf 2.4.6-9 [387 kB]
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Get: 53 http://deb.debian.org/debian buster/main armhf libltdl-dev armhf 2.4.6-9 [160 kB]
Get: 54 http://deb.debian.org/debian buster/main armhf libhwloc-dev armhf 1.11.12-3 [153 kB]
Get: 55 http://deb.debian.org/debian buster/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get: 56 http://deb.debian.org/debian buster/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.6 kB]
Get: 57 http://deb.debian.org/debian buster/main armhf libhwloc-plugins armhf 1.11.12-3 [15.7 kB]
Get: 58 http://deb.debian.org/debian buster/main armhf libnl-3-dev armhf 3.4.0-1 [96.9 kB]
Get: 59 http://deb.debian.org/debian buster/main armhf libnl-route-3-dev armhf 3.4.0-1 [162 kB]
Get: 60 http://deb.debian.org/debian buster/main armhf libibverbs-dev armhf 22.1-1 [151 kB]
Get: 61 http://deb.debian.org/debian buster/main armhf libpmix2 armhf 3.1.2-3 [449 kB]
Get: 62 http://deb.debian.org/debian buster/main armhf libopenmpi3 armhf 3.1.3-11 [1890 kB]
Get: 63 http://deb.debian.org/debian buster/main armhf openmpi-common all 3.1.3-11 [165 kB]
Get: 64 http://deb.debian.org/debian buster/main armhf openmpi-bin armhf 3.1.3-11 [198 kB]
Get: 65 http://deb.debian.org/debian buster/main armhf libopenmpi-dev armhf 3.1.3-11 [964 kB]
Get: 66 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB]
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Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up libgfortran5:armhf (8.3.0-6) ...
Setting up libevent-2.1-6:armhf (2.1.8-stable-4) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up gettext (0.19.8.1-9) ...
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Reading package lists...
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 -> Finished parsing the build-deps
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fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/phyml-3.3.20180621/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package phyml
dpkg-buildpackage: info: source version 3:3.3.20180621-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Graham Inggs <ginggs@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/phyml-3.3.20180621'
# save pdf from cleaning
mv doc/phyml-manual.pdf .
dh_auto_clean
mv phyml-manual.pdf doc
# remove temporary bin dir for phyml (see above hack)
rm -rf debian/bin
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   dh_clean
 debian/rules build
dh build
   dh_update_autotools_config
   debian/rules override_dh_autoreconf
make[1]: Entering directory '/build/phyml-3.3.20180621'
dh_autoreconf --as-needed
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/phyml-3.3.20180621'
# According to README you need different configure options to get different executables
# Here we hack in a full build process for phyml executable
# The hack includes saving the documentation from beeing cleaned up
mv doc/phyml-manual.pdf .
dh_auto_configure
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking dependency style of gcc... (cached) none
configure: "Do not use MSSE =  because not available on arch arm-unknown-linux-gnueabihf"
checking for log in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking for pdflatex... no
checking for latex... no
configure: WARNING: Documentation will not be built!
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for vprintf... yes
checking for _doprnt... no
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for strchr... yes
checking for strstr... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now"
	make -j3 "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/phyml-3.3.20180621'
make  all-recursive
make[3]: Entering directory '/build/phyml-3.3.20180621'
Making all in src
make[4]: Entering directory '/build/phyml-3.3.20180621/src'
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o main.o main.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o utilities.o utilities.c


.: Building [phyml]. Version 3.3.3:3.3.20180621-2 :.


gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o optimiz.o optimiz.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o lk.o lk.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o bionj.o bionj.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o models.o models.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o free.o free.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o help.o help.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o simu.o simu.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o eigen.o eigen.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o pars.o pars.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o alrt.o alrt.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o interface.o interface.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o cl.o cl.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o spr.o spr.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o draw.o draw.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o stats.o stats.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o rates.o rates.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o mcmc.o mcmc.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o times.o times.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o tiporder.o tiporder.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o m4.o m4.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o io.o io.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o make.o make.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o nexus.o nexus.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o init.o init.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o xml.o xml.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o date.o date.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o sse.o sse.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o avx.o avx.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o tbe.o tbe.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o mixt.o mixt.c
gcc  -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline   -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o m4.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o mixt.o -lm -lm 

Done.
make[4]: Leaving directory '/build/phyml-3.3.20180621/src'
make[4]: Entering directory '/build/phyml-3.3.20180621'
make[4]: Leaving directory '/build/phyml-3.3.20180621'
make[3]: Leaving directory '/build/phyml-3.3.20180621'
make[2]: Leaving directory '/build/phyml-3.3.20180621'
# move phyml binary to temporary dir inside debian/
mkdir -p /build/phyml-3.3.20180621/debian/bin
mv src/phyml /build/phyml-3.3.20180621/debian/bin/phyml
/usr/bin/make distclean
make[2]: Entering directory '/build/phyml-3.3.20180621'
Making distclean in src
make[3]: Entering directory '/build/phyml-3.3.20180621/src'
test -z "phyml" || rm -f phyml
rm -f *.o
rm -f *.tab.c
test -z "" || rm -f 
test . = "." || test -z "" || rm -f 
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
rm -f ./.deps/alrt.Po
rm -f ./.deps/avx.Po
rm -f ./.deps/beagle_utils.Po
rm -f ./.deps/bionj.Po
rm -f ./.deps/checkpoint.Po
rm -f ./.deps/cl.Po
rm -f ./.deps/date.Po
rm -f ./.deps/draw.Po
rm -f ./.deps/eigen.Po
rm -f ./.deps/free.Po
rm -f ./.deps/geo.Po
rm -f ./.deps/help.Po
rm -f ./.deps/init.Po
rm -f ./.deps/interface.Po
rm -f ./.deps/invitee.Po
rm -f ./.deps/io.Po
rm -f ./.deps/lk.Po
rm -f ./.deps/m4.Po
rm -f ./.deps/main.Po
rm -f ./.deps/make.Po
rm -f ./.deps/mcmc.Po
rm -f ./.deps/mg.Po
rm -f ./.deps/mixt.Po
rm -f ./.deps/models.Po
rm -f ./.deps/nexus.Po
rm -f ./.deps/optimiz.Po
rm -f ./.deps/pars.Po
rm -f ./.deps/phyml_mpi-alrt.Po
rm -f ./.deps/phyml_mpi-avx.Po
rm -f ./.deps/phyml_mpi-bionj.Po
rm -f ./.deps/phyml_mpi-cl.Po
rm -f ./.deps/phyml_mpi-date.Po
rm -f ./.deps/phyml_mpi-draw.Po
rm -f ./.deps/phyml_mpi-eigen.Po
rm -f ./.deps/phyml_mpi-free.Po
rm -f ./.deps/phyml_mpi-help.Po
rm -f ./.deps/phyml_mpi-init.Po
rm -f ./.deps/phyml_mpi-interface.Po
rm -f ./.deps/phyml_mpi-io.Po
rm -f ./.deps/phyml_mpi-lk.Po
rm -f ./.deps/phyml_mpi-m4.Po
rm -f ./.deps/phyml_mpi-main.Po
rm -f ./.deps/phyml_mpi-make.Po
rm -f ./.deps/phyml_mpi-mcmc.Po
rm -f ./.deps/phyml_mpi-mg.Po
rm -f ./.deps/phyml_mpi-mixt.Po
rm -f ./.deps/phyml_mpi-models.Po
rm -f ./.deps/phyml_mpi-mpi_boot.Po
rm -f ./.deps/phyml_mpi-nexus.Po
rm -f ./.deps/phyml_mpi-optimiz.Po
rm -f ./.deps/phyml_mpi-pars.Po
rm -f ./.deps/phyml_mpi-rates.Po
rm -f ./.deps/phyml_mpi-simu.Po
rm -f ./.deps/phyml_mpi-spr.Po
rm -f ./.deps/phyml_mpi-sse.Po
rm -f ./.deps/phyml_mpi-stats.Po
rm -f ./.deps/phyml_mpi-tbe.Po
rm -f ./.deps/phyml_mpi-times.Po
rm -f ./.deps/phyml_mpi-tiporder.Po
rm -f ./.deps/phyml_mpi-utilities.Po
rm -f ./.deps/phyml_mpi-xml.Po
rm -f ./.deps/phyrex.Po
rm -f ./.deps/rates.Po
rm -f ./.deps/simu.Po
rm -f ./.deps/spr.Po
rm -f ./.deps/sse.Po
rm -f ./.deps/stats.Po
rm -f ./.deps/tbe.Po
rm -f ./.deps/times.Po
rm -f ./.deps/tiporder.Po
rm -f ./.deps/utilities.Po
rm -f ./.deps/xml.Po
rm -f Makefile
make[3]: Leaving directory '/build/phyml-3.3.20180621/src'
make[3]: Entering directory '/build/phyml-3.3.20180621'
test -z "" || rm -f 
test . = "." || test -z "" || rm -f 
rm -f config.h stamp-h1
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
rm -f cscope.out cscope.in.out cscope.po.out cscope.files
make[3]: Leaving directory '/build/phyml-3.3.20180621'
rm -f config.status config.cache config.log configure.lineno config.status.lineno
rm -f Makefile
make[2]: Leaving directory '/build/phyml-3.3.20180621'
dh_auto_configure -- --enable-mpi
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mpi
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking dependency style of gcc... (cached) none
configure: "Do not use MSSE =  because not available on arch arm-unknown-linux-gnueabihf"
checking for log in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking for pdflatex... no
checking for latex... no
configure: WARNING: Documentation will not be built!
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for vprintf... yes
checking for _doprnt... no
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for strchr... yes
checking for strstr... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for MPI_C... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now"
	make -j3 "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/phyml-3.3.20180621'
make  all-recursive
make[3]: Entering directory '/build/phyml-3.3.20180621'
Making all in src
make[4]: Entering directory '/build/phyml-3.3.20180621/src'
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c


.: Building [phyml-mpi]. Version 3.3.3:3.3.20180621-2 :.


gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-rates.o `test -f 'rates.c' || echo './'`rates.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-times.o `test -f 'times.c' || echo './'`times.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-tiporder.o `test -f 'tiporder.c' || echo './'`tiporder.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-mg.o `test -f 'mg.c' || echo './'`mg.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-m4.o `test -f 'm4.c' || echo './'`m4.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-date.o `test -f 'date.c' || echo './'`date.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c
gcc  -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline  -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c
gcc -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline   -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi -lm 

Done.
make[4]: Leaving directory '/build/phyml-3.3.20180621/src'
make[4]: Entering directory '/build/phyml-3.3.20180621'
make[4]: Leaving directory '/build/phyml-3.3.20180621'
make[3]: Leaving directory '/build/phyml-3.3.20180621'
make[2]: Leaving directory '/build/phyml-3.3.20180621'
# move phyml binary to temporary dir inside debian/
# mkdir -p /build/phyml-3.3.20180621/debian/bin
mv src/phyml-mpi /build/phyml-3.3.20180621/debian/bin/phyml-mpi
mv phyml-manual.pdf doc
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   dh_auto_test
	make -j3 check VERBOSE=1
make[1]: Entering directory '/build/phyml-3.3.20180621'
Making check in src
make[2]: Entering directory '/build/phyml-3.3.20180621/src'


gcc -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline    -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi -lm 
.: Building [phyml-mpi]. Version 3.3.3:3.3.20180621-2 :.



Done.
make[2]: Leaving directory '/build/phyml-3.3.20180621/src'
make[2]: Entering directory '/build/phyml-3.3.20180621'
make[2]: Leaving directory '/build/phyml-3.3.20180621'
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh binary
   dh_testroot
   dh_prep
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/phyml-3.3.20180621'
dh_auto_install
	make -j3 install DESTDIR=/build/phyml-3.3.20180621/debian/phyml AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/build/phyml-3.3.20180621'
Making install in src
make[3]: Entering directory '/build/phyml-3.3.20180621/src'


.: Building [phyml-mpi]. Version 3.3.3:3.3.20180621-2 :.



Done.
make[4]: Entering directory '/build/phyml-3.3.20180621/src'
make[4]: Nothing to be done for 'install-data-am'.
 /bin/mkdir -p '/build/phyml-3.3.20180621/debian/phyml/usr/bin'
  /usr/bin/install -c phyml-mpi '/build/phyml-3.3.20180621/debian/phyml/usr/bin'
make[4]: Leaving directory '/build/phyml-3.3.20180621/src'
make[3]: Leaving directory '/build/phyml-3.3.20180621/src'
make[3]: Entering directory '/build/phyml-3.3.20180621'
make[4]: Entering directory '/build/phyml-3.3.20180621'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/phyml-3.3.20180621'
make[3]: Leaving directory '/build/phyml-3.3.20180621'
make[2]: Leaving directory '/build/phyml-3.3.20180621'
# install phyml binary we have kept safe above
mkdir -p /build/phyml-3.3.20180621/debian/phyml/usr/lib/phyml/bin
mv /build/phyml-3.3.20180621/debian/bin/* /build/phyml-3.3.20180621/debian/phyml/usr/lib/phyml/bin
chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml*
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   dh_install
   debian/rules override_dh_installdocs
make[1]: Entering directory '/build/phyml-3.3.20180621'
dh_installdocs
mv /build/phyml-3.3.20180621/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /build/phyml-3.3.20180621/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   dh_installchangelogs
   dh_installexamples
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   debian/rules override_dh_compress
make[1]: Entering directory '/build/phyml-3.3.20180621'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   debian/rules override_dh_fixperms
make[1]: Entering directory '/build/phyml-3.3.20180621'
dh_fixperms
find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \;
find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \;
make[1]: Leaving directory '/build/phyml-3.3.20180621'
   dh_missing
   dh_strip
   dh_makeshlibs
   dh_shlibdeps
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'phyml-dbgsym' in '../phyml-dbgsym_3.3.20180621-2_armhf.deb'.
dpkg-deb: building package 'phyml' in '../phyml_3.3.20180621-2_armhf.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../phyml_3.3.20180621-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/21090 and its subdirectories
I: Current time: Sun Jul 12 09:04:07 -12 2020
I: pbuilder-time-stamp: 1594587847
Sun Jul 12 21:04:30 UTC 2020  I: 1st build successful. Starting 2nd build on remote node p64b-armhf-rb.debian.net.
Sun Jul 12 21:04:30 UTC 2020  I: Preparing to do remote build '2' on p64b-armhf-rb.debian.net.
Sun Jul 12 21:13:03 UTC 2020  I: Deleting $TMPDIR on p64b-armhf-rb.debian.net.
Sun Jul 12 21:13:07 UTC 2020  I: phyml_3.3.20180621-2_armhf.changes:
Format: 1.8
Date: Wed, 27 Jun 2018 16:24:13 +0000
Source: phyml
Binary: phyml phyml-dbgsym
Architecture: armhf
Version: 3:3.3.20180621-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
 phyml      - Phylogenetic estimation using Maximum Likelihood
Changes:
 phyml (3:3.3.20180621-2) unstable; urgency=medium
 .
   * Team upload
 .
   [ Andreas Tille ]
   * Install test script to user documentation
 .
   [ Graham Inggs ]
   * Allow MPI oversubscription in autopkgtests
Checksums-Sha1:
 20a80a8eebcc24e73e3c6d7582e9dd384b79a487 41264 phyml-dbgsym_3.3.20180621-2_armhf.deb
 b2aeff8dbe3c707698043944f44313e4a0724f60 5646 phyml_3.3.20180621-2_armhf.buildinfo
 f2e3a21baca7614fc09249dc0f96f8b65919fa7b 1495372 phyml_3.3.20180621-2_armhf.deb
Checksums-Sha256:
 aed4ba25b7d2937efc71053e58a5a46a7b0a65df7bc4aa511a74a2e5b6fd8840 41264 phyml-dbgsym_3.3.20180621-2_armhf.deb
 7a964b01c9bed70ecebf68e9de8198d265959600c491deda3ee32777374d728c 5646 phyml_3.3.20180621-2_armhf.buildinfo
 1795b89f9cf9af9b206467335b54e487ed325e54dc0da9323fe163e112a4b040 1495372 phyml_3.3.20180621-2_armhf.deb
Files:
 194ffa349343a00c612d21bffcc56a88 41264 debug optional phyml-dbgsym_3.3.20180621-2_armhf.deb
 c25f818bcf32b0a37d1f1ff436a06518 5646 science optional phyml_3.3.20180621-2_armhf.buildinfo
 3d339cd83453b09c79d65b98cc0a913d 1495372 science optional phyml_3.3.20180621-2_armhf.deb
Sun Jul 12 21:13:18 UTC 2020  I: diffoscope 151 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/phyml_3.3.20180621-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/phyml_3.3.20180621-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/phyml_3.3.20180621-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/b1/phyml_3.3.20180621-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.TLEtOEXUx2/b2/phyml_3.3.20180621-2_armhf.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.279s)
       0.279s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.053s)
       0.053s     10 calls    diffoscope.comparators.binary.FilesystemFile
       0.000s      8 calls    abc.DotChangesFile
Sun Jul 12 21:13:37 UTC 2020  I: diffoscope 151 found no differences in the changes files, and a .buildinfo file also exists.
Sun Jul 12 21:13:37 UTC 2020  I: phyml from buster built successfully and reproducibly on armhf.
Sun Jul 12 21:13:39 UTC 2020  I: Submitting .buildinfo files to external archives:
Sun Jul 12 21:13:39 UTC 2020  I: Submitting 8.0K	b1/phyml_3.3.20180621-2_armhf.buildinfo.asc
Sun Jul 12 21:13:40 UTC 2020  I: Submitting 8.0K	b2/phyml_3.3.20180621-2_armhf.buildinfo.asc
Sun Jul 12 21:13:42 UTC 2020  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Jul 12 21:13:42 UTC 2020  I: Done submitting .buildinfo files.
Sun Jul 12 21:13:42 UTC 2020  I: Removing signed phyml_3.3.20180621-2_armhf.buildinfo.asc files:
removed './b1/phyml_3.3.20180621-2_armhf.buildinfo.asc'
removed './b2/phyml_3.3.20180621-2_armhf.buildinfo.asc'