Tue Jul 28 07:00:28 UTC 2020 I: starting to build pybigwig/buster/armhf on jenkins on '2020-07-28 07:00'
Tue Jul 28 07:00:28 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_10/1473/console.log
Tue Jul 28 07:00:28 UTC 2020 I: Downloading source for buster/pybigwig=0.3.12-1
--2020-07-28 07:00:28-- http://deb.debian.org/debian/pool/main/p/pybigwig/pybigwig_0.3.12-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2154 (2.1K)
Saving to: ‘pybigwig_0.3.12-1.dsc’
0K .. 100% 242M=0s
2020-07-28 07:00:28 (242 MB/s) - ‘pybigwig_0.3.12-1.dsc’ saved [2154/2154]
Tue Jul 28 07:00:28 UTC 2020 I: pybigwig_0.3.12-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pybigwig
Binary: python-pybigwig, python3-pybigwig
Architecture: any
Version: 0.3.12-1
Maintainer: Diane Trout <diane@ghic.org>
Homepage: https://github.com/dpryan79/pyBigWig
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/pybigwig
Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git
Testsuite: autopkgtest
Testsuite-Triggers: python-all, python3-all
Build-Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, python-all (>= 2.6.6-3~), python-all-dev, python-numpy, python-setuptools, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Package-List:
python-pybigwig deb science optional arch=any
python3-pybigwig deb science optional arch=any
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Tue Jul 28 07:00:28 UTC 2020 I: Checking whether the package is not for us
Tue Jul 28 07:00:28 UTC 2020 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net.
Tue Jul 28 07:00:28 UTC 2020 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net.
Tue Jul 28 07:07:36 UTC 2020 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Jul 27 19:00:39 -12 2020
I: pbuilder-time-stamp: 1595919639
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [pybigwig_0.3.12-1.dsc]
I: copying [./pybigwig_0.3.12.orig.tar.gz]
I: copying [./pybigwig_0.3.12-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 16 16:18:03 2018 -12
gpgv: using RSA key 4D055C31E4812045F9010D75990D38367334D770
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pybigwig_0.3.12-1.dsc
dpkg-source: info: extracting pybigwig in pybigwig-0.3.12
dpkg-source: info: unpacking pybigwig_0.3.12.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.12-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/4900/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='8d32a35273ca48d884739a0cdf9941c8'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='4900'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/pbuilderrc_K6w8 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/b1 --logfile b1/build.log pybigwig_0.3.12-1.dsc'
SUDO_GID='115'
SUDO_UID='111'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux cbxi4pro0 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux
I: ls -l /bin
total 3328
-rwxr-xr-x 1 root root 767656 Apr 17 2019 bash
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2
-rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
-rwxr-xr-x 1 root root 22432 Feb 28 2019 cat
-rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp
-rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod
-rwxr-xr-x 1 root root 42972 Feb 28 2019 chown
-rwxr-xr-x 1 root root 88376 Feb 28 2019 cp
-rwxr-xr-x 1 root root 75516 Jan 17 2019 dash
-rwxr-xr-x 1 root root 71648 Feb 28 2019 date
-rwxr-xr-x 1 root root 51212 Feb 28 2019 dd
-rwxr-xr-x 1 root root 55672 Feb 28 2019 df
-rwxr-xr-x 1 root root 88444 Feb 28 2019 dir
-rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg
lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
-rwxr-xr-x 1 root root 22364 Feb 28 2019 echo
-rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
-rwxr-xr-x 1 root root 18260 Feb 28 2019 false
-rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
-rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt
-rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount
-rwxr-xr-x 1 root root 124508 Jan 7 2019 grep
-rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
-rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
-rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip
-rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname
-rwxr-xr-x 1 root root 43044 Feb 28 2019 ln
-rwxr-xr-x 1 root root 34932 Jul 26 2018 login
-rwxr-xr-x 1 root root 88444 Feb 28 2019 ls
-rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk
-rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir
-rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod
-rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp
-rwxr-xr-x 1 root root 26024 Jan 9 2019 more
-rwsr-xr-x 1 root root 34268 Jan 9 2019 mount
-rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint
-rwxr-xr-x 1 root root 84284 Feb 28 2019 mv
lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd
lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
-rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink
-rwxr-xr-x 1 root root 42968 Feb 28 2019 rm
-rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir
-rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 25 20:26 sh -> dash
-rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep
-rwxr-xr-x 1 root root 51124 Feb 28 2019 stty
-rwsr-xr-x 1 root root 42472 Jan 9 2019 su
-rwxr-xr-x 1 root root 22392 Feb 28 2019 sync
-rwxr-xr-x 1 root root 283324 Apr 23 2019 tar
-rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile
-rwxr-xr-x 1 root root 63464 Feb 28 2019 touch
-rwxr-xr-x 1 root root 18260 Feb 28 2019 true
-rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server
-rwsr-xr-x 1 root root 21976 Jan 9 2019 umount
-rwxr-xr-x 1 root root 22380 Feb 28 2019 uname
-rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
-rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir
-rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl
-rwxr-xr-x 1 root root 946 Jan 21 2019 which
lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
-rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
-rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
-rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
-rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
-rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
-rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
-rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
-rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
-rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
I: user script /srv/workspace/pbuilder/4900/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, python-all (>= 2.6.6-3~), python-all-dev, python-numpy, python-setuptools, python3-all, python3-all-dev, python3-numpy, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev; however:
Package libcurl4-gnutls-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on python-all (>= 2.6.6-3~); however:
Package python-all is not installed.
pbuilder-satisfydepends-dummy depends on python-all-dev; however:
Package python-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python-numpy; however:
Package python-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python-setuptools; however:
Package python-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix shared-mime-info wget xdg-user-dirs
0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
Need to get 119 MB of archives. After unpacking 259 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u1 [582 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf python3.7-minimal armhf 3.7.3-2+deb10u1 [1465 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf libmpdec2 armhf 2.4.2-2 [69.3 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u1 [1660 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf python3.7 armhf 3.7.3-2+deb10u1 [330 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 34 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 35 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 36 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 37 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 38 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 39 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 40 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 41 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 42 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 43 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 44 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 45 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 46 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 47 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 48 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 49 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 50 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 51 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 52 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 53 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 54 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 55 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 56 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Get: 57 http://deb.debian.org/debian buster/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB]
Get: 58 http://deb.debian.org/debian buster/main armhf python3-distutils all 3.7.3-1 [142 kB]
Get: 59 http://deb.debian.org/debian buster/main armhf dh-python all 3.20190308 [99.3 kB]
Get: 60 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB]
Get: 61 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB]
Get: 62 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB]
Get: 63 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB]
Get: 64 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB]
Get: 65 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB]
Get: 66 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB]
Get: 67 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB]
Get: 68 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB]
Get: 69 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB]
Get: 70 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB]
Get: 71 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB]
Get: 72 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB]
Get: 73 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB]
Get: 74 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB]
Get: 75 http://deb.debian.org/debian buster/main armhf libcurl3-gnutls armhf 7.64.0-4+deb10u1 [295 kB]
Get: 76 http://deb.debian.org/debian buster/main armhf libcurl4-gnutls-dev armhf 7.64.0-4+deb10u1 [389 kB]
Get: 77 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB]
Get: 78 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB]
Get: 79 http://deb.debian.org/debian buster/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [892 kB]
Get: 80 http://deb.debian.org/debian buster/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [31.0 MB]
Get: 81 http://deb.debian.org/debian buster/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get: 82 http://deb.debian.org/debian buster/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get: 83 http://deb.debian.org/debian buster/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get: 84 http://deb.debian.org/debian buster/main armhf libpython3.7 armhf 3.7.3-2+deb10u1 [1282 kB]
Get: 85 http://deb.debian.org/debian buster/main armhf libpython3.7-dev armhf 3.7.3-2+deb10u1 [47.2 MB]
Get: 86 http://deb.debian.org/debian buster/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get: 87 http://deb.debian.org/debian buster/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get: 88 http://deb.debian.org/debian buster/main armhf python-all armhf 2.7.16-1 [1044 B]
Get: 89 http://deb.debian.org/debian buster/main armhf python2.7-dev armhf 2.7.16-2+deb10u1 [291 kB]
Get: 90 http://deb.debian.org/debian buster/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get: 91 http://deb.debian.org/debian buster/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get: 92 http://deb.debian.org/debian buster/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get: 93 http://deb.debian.org/debian buster/main armhf python-pkg-resources all 40.8.0-1 [182 kB]
Get: 94 http://deb.debian.org/debian buster/main armhf python-numpy armhf 1:1.16.2-1 [1885 kB]
Get: 95 http://deb.debian.org/debian buster/main armhf python-setuptools all 40.8.0-1 [382 kB]
Get: 96 http://deb.debian.org/debian buster/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get: 97 http://deb.debian.org/debian buster/main armhf python3.7-dev armhf 3.7.3-2+deb10u1 [509 kB]
Get: 98 http://deb.debian.org/debian buster/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get: 99 http://deb.debian.org/debian buster/main armhf python3-all-dev armhf 3.7.3-1 [1064 B]
Get: 100 http://deb.debian.org/debian buster/main armhf python3-pkg-resources all 40.8.0-1 [153 kB]
Get: 101 http://deb.debian.org/debian buster/main armhf python3-numpy armhf 1:1.16.2-1 [1903 kB]
Get: 102 http://deb.debian.org/debian buster/main armhf python3-setuptools all 40.8.0-1 [306 kB]
Get: 103 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB]
Fetched 119 MB in 22s (5350 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking man-db (2.8.5-2) ...
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Selecting previously unselected package libpython2.7-stdlib:armhf.
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Selecting previously unselected package libpython2-stdlib:armhf.
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Setting up python-minimal (2.7.16-1) ...
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Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ...
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Unpacking gettext-base (0.19.8.1-9) ...
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Unpacking libsigsegv2:armhf (2.12-2) ...
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Unpacking m4 (1.4.18-2) ...
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Unpacking autoconf (2.69-11) ...
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Unpacking autotools-dev (20180224.1) ...
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Unpacking automake (1:1.16.1-4) ...
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Unpacking autopoint (0.19.8.1-9) ...
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Unpacking dh-autoreconf (19) ...
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Unpacking libarchive-zip-perl (1.64-1) ...
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Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
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Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:armhf.
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Unpacking libelf1:armhf (0.176-1.1) ...
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Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
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Unpacking gettext (0.19.8.1-9) ...
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Unpacking intltool-debian (0.35.0+20060710.5) ...
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Unpacking debhelper (12.1.1) ...
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Unpacking python3-lib2to3 (3.7.3-1) ...
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Unpacking libgfortran5:armhf (8.3.0-6) ...
Selecting previously unselected package libblas3:armhf.
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Unpacking libblas3:armhf (3.8.0-2) ...
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Unpacking libkeyutils1:armhf (1.6-6) ...
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Unpacking libkrb5support0:armhf (1.17-3) ...
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Unpacking libk5crypto3:armhf (1.17-3) ...
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No schema files found: doing nothing.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Processing triggers for libc-bin (2.28-10) ...
Reading package lists...
Building dependency tree...
Reading state information...
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-> Finished parsing the build-deps
Reading package lists...
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fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/pybigwig-0.3.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.12-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Diane Trout <diane@ghic.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.12/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python2.7 setup.py clean
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
/usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build
dh build --with python2,python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:217: python2.7 setup.py config
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
I: pybuild base:217: python3.7 setup.py config
running config
/usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python setup.py build
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest
running egg_info
writing requirements to pyBigWig.egg-info/requires.txt
writing pyBigWig.egg-info/PKG-INFO
writing top-level names to pyBigWig.egg-info/top_level.txt
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules _winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/libBigWig
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
arm-linux-gnueabihf-gcc: libBigWig/bwValues.c
arm-linux-gnueabihf-gcc: libBigWig/io.c
arm-linux-gnueabihf-gcc: libBigWig/bwWrite.c
arm-linux-gnueabihf-gcc: libBigWig/bwStats.c
libBigWig/io.c: In function 'urlFetchData':
libBigWig/io.c:33:22: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", URL->filePos, URL->filePos+bufSize-1);
~~^ ~~~~~~~~~~~~
%u
libBigWig/io.c: In function 'urlSeek':
libBigWig/io.c:141:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1);
~~^ ~~~
%u
libBigWig/io.c:141:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1);
~~^ ~~~~~~~~~~~~~~~~~~
%u
libBigWig/io.c: In function 'urlOpen':
libBigWig/io.c:223:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range, "0-%lu", URL->bufSize-1);
~~^ ~~~~~~~~~~~~~~
%u
arm-linux-gnueabihf-gcc: pyBigWig.c
arm-linux-gnueabihf-gcc: libBigWig/bwRead.c
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/libBigWig/bwWrite.o build/temp.linux-armhf-2.7/libBigWig/bwRead.o build/temp.linux-armhf-2.7/libBigWig/bwValues.o build/temp.linux-armhf-2.7/libBigWig/io.o build/temp.linux-armhf-2.7/libBigWig/bwStats.o build/temp.linux-armhf-2.7/pyBigWig.o -L/usr/lib/python2.7/dist-packages/numpy/core/lib -L/usr/lib/python2.7/config-arm-linux-gnueabihf -lm -lz -lpython2.7 -lcurl -lnpymath -lm -o /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWig.so
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/libBigWig
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.7m -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
arm-linux-gnueabihf-gcc: libBigWig/bwWrite.c
arm-linux-gnueabihf-gcc: libBigWig/bwRead.c
arm-linux-gnueabihf-gcc: libBigWig/bwValues.c
arm-linux-gnueabihf-gcc: libBigWig/io.c
libBigWig/io.c: In function 'urlFetchData':
libBigWig/io.c:33:22: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", URL->filePos, URL->filePos+bufSize-1);
~~^ ~~~~~~~~~~~~
%u
libBigWig/io.c: In function 'urlSeek':
libBigWig/io.c:141:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1);
~~^ ~~~
%u
libBigWig/io.c:141:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1);
~~^ ~~~~~~~~~~~~~~~~~~
%u
libBigWig/io.c: In function 'urlOpen':
libBigWig/io.c:223:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
sprintf(range, "0-%lu", URL->bufSize-1);
~~^ ~~~~~~~~~~~~~~
%u
arm-linux-gnueabihf-gcc: libBigWig/bwStats.c
arm-linux-gnueabihf-gcc: pyBigWig.c
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/libBigWig/bwWrite.o build/temp.linux-armhf-3.7/libBigWig/bwRead.o build/temp.linux-armhf-3.7/libBigWig/bwValues.o build/temp.linux-armhf-3.7/libBigWig/io.o build/temp.linux-armhf-3.7/libBigWig/bwStats.o build/temp.linux-armhf-3.7/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.7/config-3.7m-arm-linux-gnueabihf -lm -lz -lpython3.7m -lcurl -lnpymath -lm -o /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWig.cpython-37m-arm-linux-gnueabihf.so
/usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:217: cd /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:217: cd /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build; python3.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary --with python2,python3 --buildsystem=pybuild
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/pybigwig-0.3.12'
dh_auto_install
I: pybuild base:217: /usr/bin/python setup.py install --root /build/pybigwig-0.3.12/debian/python-pybigwig
/usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running install
running build
running build_py
running egg_info
writing requirements to pyBigWig.egg-info/requires.txt
writing pyBigWig.egg-info/PKG-INFO
writing top-level names to pyBigWig.egg-info/top_level.txt
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /build/pybigwig-0.3.12/debian/python-pybigwig
creating /build/pybigwig-0.3.12/debian/python-pybigwig/usr
creating /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib
creating /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7
creating /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages
creating /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/test.pyc -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/test.bw -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/test.py -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/__init__.pyc -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWigTest/__init__.py -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython2_2.7_pybigwig/build/pyBigWig.so -> /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages
byte-compiling /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest/test.py to test.pyc
byte-compiling /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWigTest/__init__.py to __init__.pyc
running install_egg_info
Copying pyBigWig.egg-info to /build/pybigwig-0.3.12/debian/python-pybigwig/usr/lib/python2.7/dist-packages/pyBigWig-0.3.12.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/pybigwig-0.3.12/debian/python3-pybigwig
running install
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /build/pybigwig-0.3.12/debian/python3-pybigwig
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest
creating /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest/__pycache__
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-37.pyc -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest/__pycache__
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-37.pyc -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest/__pycache__
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/test.bw -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/test.py -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWigTest/__init__.py -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest
copying /build/pybigwig-0.3.12/.pybuild/cpython3_3.7_pybigwig/build/pyBigWig.cpython-37m-arm-linux-gnueabihf.so -> /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages
byte-compiling /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest/test.py to test.cpython-37.pyc
byte-compiling /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-37.pyc
running install_egg_info
Copying pyBigWig.egg-info to /build/pybigwig-0.3.12/debian/python3-pybigwig/usr/lib/python3.7/dist-packages/pyBigWig-0.3.12.egg-info
Skipping SOURCES.txt
running install_scripts
/usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
dh_numpy
dh_numpy3
make[1]: Leaving directory '/build/pybigwig-0.3.12'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_python2 -O--buildsystem=pybuild
I: dh_python2 fs:343: renaming pyBigWig.so to pyBigWig.arm-linux-gnueabihf.so
/usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
'libpython%s: %s', so_version, fn)
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: pyBigWig.arm-linux-gnueabihf.so
dh_python3 -O--buildsystem=pybuild
dh_installinit -O--buildsystem=pybuild
dh_lintian -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_strip -O--buildsystem=pybuild
dh_makeshlibs -O--buildsystem=pybuild
dh_shlibdeps -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-pybigwig: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python:Depends} unused, but is defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python-pybigwig' in '../python-pybigwig_0.3.12-1_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.12-1_armhf.deb'.
dpkg-deb: building package 'python-pybigwig-dbgsym' in '../python-pybigwig-dbgsym_0.3.12-1_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.12-1_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../pybigwig_0.3.12-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.12/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/4900 and its subdirectories
I: Current time: Mon Jul 27 19:07:30 -12 2020
I: pbuilder-time-stamp: 1595920050
Tue Jul 28 07:07:38 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net.
Tue Jul 28 07:07:38 UTC 2020 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net.
Tue Jul 28 07:11:14 UTC 2020 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net.
Tue Jul 28 07:11:16 UTC 2020 I: pybigwig_0.3.12-1_armhf.changes:
Format: 1.8
Date: Mon, 15 Oct 2018 21:30:28 -0700
Source: pybigwig
Binary: python-pybigwig python-pybigwig-dbgsym python3-pybigwig python3-pybigwig-dbgsym
Architecture: armhf
Version: 0.3.12-1
Distribution: unstable
Urgency: medium
Maintainer: Diane Trout <diane@ghic.org>
Changed-By: Diane Trout <diane@ghic.org>
Description:
python-pybigwig - Python 2 module for quick access to bigBed and bigWig files
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Closes: 911119
Changes:
pybigwig (0.3.12-1) unstable; urgency=medium
.
* New upstream release.
* Add python all package to autopkgtest dependencies. (Closes: #911119)
* Update Standards-Version no changes needed
* Add vcs tags
Checksums-Sha1:
b5ccb05edf681db75d5484f698e45e8b4e2a9d55 7606 pybigwig_0.3.12-1_armhf.buildinfo
2df9ad108d753cb41cfafc77533330491f7e2779 109384 python-pybigwig-dbgsym_0.3.12-1_armhf.deb
a36251698bf608840e856e743e83a7339c0c0d7c 47912 python-pybigwig_0.3.12-1_armhf.deb
54a7538ecea200acd835ced7ee1f37e665f0e236 112656 python3-pybigwig-dbgsym_0.3.12-1_armhf.deb
5547ddcf68256d0d8e81b96a0f6c0cc2bdc781fb 47964 python3-pybigwig_0.3.12-1_armhf.deb
Checksums-Sha256:
8492d4733a83782ddb6790a0bc5614cad4dda1ed6e24fe73fd8aba56cca70229 7606 pybigwig_0.3.12-1_armhf.buildinfo
0d4c0664dd5bcf3af51bf5d973443c08cbbbdf7a332850305c219c539db258ca 109384 python-pybigwig-dbgsym_0.3.12-1_armhf.deb
fe97fa739aea2581ed27ce373b4476770f6baf98b823fd8e5dbe2373983d85d6 47912 python-pybigwig_0.3.12-1_armhf.deb
0260850d14993f4f3ac1f23c5cf94a1a61b297aefbf76b2798d1be23cd6cbfd6 112656 python3-pybigwig-dbgsym_0.3.12-1_armhf.deb
519541df1031317516ffded06844d9cb0961122494691b205db11d9e84502928 47964 python3-pybigwig_0.3.12-1_armhf.deb
Files:
5f157a8f7c7ae636392fc1351520e7bb 7606 science optional pybigwig_0.3.12-1_armhf.buildinfo
06dfa11008aee0a9fa3e22642150d51d 109384 debug optional python-pybigwig-dbgsym_0.3.12-1_armhf.deb
2e7d993052369f8ed7ad539b50609a2b 47912 science optional python-pybigwig_0.3.12-1_armhf.deb
3e27ffbc0b5d95985b5deae3401f2575 112656 debug optional python3-pybigwig-dbgsym_0.3.12-1_armhf.deb
9863db9f805585c726fa3c91ce3892af 47964 science optional python3-pybigwig_0.3.12-1_armhf.deb
Tue Jul 28 07:11:17 UTC 2020 I: diffoscope 153 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/pybigwig_0.3.12-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/pybigwig_0.3.12-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/pybigwig_0.3.12-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/b1/pybigwig_0.3.12-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.OMA5f28o5m/b2/pybigwig_0.3.12-1_armhf.changes
## close_archive (total time: 0.002s)
0.001s 36 calls diffoscope.comparators.xz.XzContainer
0.000s 24 calls diffoscope.comparators.tar.TarContainer
0.000s 16 calls diffoscope.comparators.deb.DebContainer
0.000s 12 calls diffoscope.comparators.deb.DebTarContainer
## command (total time: 26.177s)
12.163s 220 calls diff
6.467s 220 calls objdump
5.912s 1353 calls readelf
0.958s 4 calls objcopy
0.449s 36 calls xz
0.137s 15 calls cmp
0.088s 33 calls strings
0.002s 31 calls cmp (internal)
## compare_files (cumulative) (total time: 119.287s)
22.416s 1 call abc.DotChangesFile
22.166s 4 calls abc.DebFile
21.720s 8 calls abc.XzFile
20.597s 4 calls abc.DebDataTarFile
20.034s 3 calls abc.ElfFile
8.312s 12 calls diffoscope.comparators.elf.ElfCodeSection
2.846s 40 calls diffoscope.comparators.elf.ElfSection
0.544s 4 calls abc.TarFile
0.367s 5 calls diffoscope.comparators.elf.ElfStringSection
0.139s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.076s 4 calls abc.Md5sumsFile
0.071s 2 calls abc.TextFile
## container_extract (total time: 0.538s)
0.455s 36 calls diffoscope.comparators.xz.XzContainer
0.030s 54 calls diffoscope.comparators.deb.DebTarContainer
0.028s 40 calls diffoscope.comparators.tar.TarContainer
0.025s 44 calls diffoscope.comparators.deb.DebContainer
## has_same_content_as (total time: 0.147s)
0.040s 4 calls abc.DebFile
0.039s 4 calls abc.DebDataTarFile
0.036s 8 calls abc.XzFile
0.028s 3 calls abc.ElfFile
0.002s 12 calls abc.TextFile
0.001s 8 calls abc.Md5sumsFile
0.001s 4 calls abc.TarFile
0.000s 40 calls diffoscope.comparators.elf.ElfSection
0.000s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.000s 1 call abc.DotChangesFile
0.000s 12 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 5 calls diffoscope.comparators.elf.ElfStringSection
0.000s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
## main (total time: 34.241s)
34.201s 2 calls outputs
0.040s 1 call cleanup
## open_archive (total time: 0.002s)
0.001s 36 calls diffoscope.comparators.xz.XzContainer
0.000s 24 calls diffoscope.comparators.tar.TarContainer
0.000s 16 calls diffoscope.comparators.deb.DebContainer
0.000s 12 calls diffoscope.comparators.deb.DebTarContainer
## output (total time: 11.527s)
11.258s 1 call html
0.174s 1 call text
0.095s 1 call json
## recognizes (total time: 1.144s)
0.508s 2852 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.321s 1356 calls diffoscope.comparators.utils.archive.ArchiveMember
0.171s 720 calls diffoscope.comparators.elf.ElfSection
0.061s 216 calls diffoscope.comparators.elf.ElfCodeSection
0.033s 10 calls diffoscope.comparators.binary.FilesystemFile
0.022s 336 calls diffoscope.comparators.debian.DebControlMember
0.018s 90 calls diffoscope.comparators.elf.ElfStringSection
0.007s 36 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.001s 56 calls abc.Md5sumsFile
0.000s 8 calls abc.DotChangesFile
0.000s 8 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink
Tue Jul 28 07:11:53 UTC 2020 E: pybigwig failed to build reproducibly in buster on armhf.
Tue Jul 28 07:11:56 UTC 2020 I: Submitting .buildinfo files to external archives:
Tue Jul 28 07:11:56 UTC 2020 I: Submitting 12K b1/pybigwig_0.3.12-1_armhf.buildinfo.asc
Tue Jul 28 07:11:58 UTC 2020 I: Submitting 12K b2/pybigwig_0.3.12-1_armhf.buildinfo.asc
Tue Jul 28 07:11:58 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Jul 28 07:11:58 UTC 2020 I: Done submitting .buildinfo files.
Tue Jul 28 07:11:58 UTC 2020 I: Removing signed pybigwig_0.3.12-1_armhf.buildinfo.asc files:
removed './b1/pybigwig_0.3.12-1_armhf.buildinfo.asc'
removed './b2/pybigwig_0.3.12-1_armhf.buildinfo.asc'