Tue Aug 11 01:20:15 UTC 2020 I: starting to build python-biom-format/buster/armhf on jenkins on '2020-08-11 01:19'
Tue Aug 11 01:20:15 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_44/4901/console.log
Tue Aug 11 01:20:15 UTC 2020 I: Downloading source for buster/python-biom-format=2.1.7+dfsg-2
--2020-08-11 01:20:15-- http://deb.debian.org/debian/pool/main/p/python-biom-format/python-biom-format_2.1.7+dfsg-2.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2948 (2.9K)
Saving to: ‘python-biom-format_2.1.7+dfsg-2.dsc’
0K .. 100% 203M=0s
2020-08-11 01:20:15 (203 MB/s) - ‘python-biom-format_2.1.7+dfsg-2.dsc’ saved [2948/2948]
Tue Aug 11 01:20:15 UTC 2020 I: python-biom-format_2.1.7+dfsg-2.dsc
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Hash: SHA256
Format: 3.0 (quilt)
Source: python-biom-format
Binary: python-biom-format, python3-biom-format, python-biom-format-doc, biom-format-tools
Architecture: any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all
Version: 2.1.7+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: http://biom-format.org/
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format
Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git
Testsuite: autopkgtest-pkg-python
Build-Depends: debhelper (>= 12~), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-pandas, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
Package-List:
biom-format-tools deb misc optional arch=any-amd64,any-arm64,armel,armhf,any-i386,any-mips64el,mipsel,any-ppc64el
python-biom-format deb python optional arch=any-amd64,any-arm64,armel,armhf,any-i386,any-mips64el,mipsel,any-ppc64el
python-biom-format-doc deb doc optional arch=all
python3-biom-format deb python optional arch=any-amd64,any-arm64,armel,armhf,any-i386,any-mips64el,mipsel,any-ppc64el
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Tue Aug 11 01:20:15 UTC 2020 I: Checking whether the package is not for us
Tue Aug 11 01:20:16 UTC 2020 I: Starting 1st build on remote node cbxi4b-armhf-rb.debian.net.
Tue Aug 11 01:20:16 UTC 2020 I: Preparing to do remote build '1' on cbxi4b-armhf-rb.debian.net.
Tue Aug 11 01:35:03 UTC 2020 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Aug 10 13:20:26 -12 2020
I: pbuilder-time-stamp: 1597108826
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-biom-format_2.1.7+dfsg-2.dsc]
I: copying [./python-biom-format_2.1.7+dfsg.orig.tar.xz]
I: copying [./python-biom-format_2.1.7+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb 13 09:26:21 2019 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.7+dfsg-2.dsc
dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.7+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/9857/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='c1803e9b0d9f40688fe88def94314b6d'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='9857'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/pbuilderrc_aeWP --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/b1 --logfile b1/build.log python-biom-format_2.1.7+dfsg-2.dsc'
SUDO_GID='116'
SUDO_UID='112'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux cbxi4b 4.19.0-10-armmp #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux
I: ls -l /bin
total 3328
-rwxr-xr-x 1 root root 767656 Apr 17 2019 bash
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2
-rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
-rwxr-xr-x 1 root root 22432 Feb 28 2019 cat
-rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp
-rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod
-rwxr-xr-x 1 root root 42972 Feb 28 2019 chown
-rwxr-xr-x 1 root root 88376 Feb 28 2019 cp
-rwxr-xr-x 1 root root 75516 Jan 17 2019 dash
-rwxr-xr-x 1 root root 71648 Feb 28 2019 date
-rwxr-xr-x 1 root root 51212 Feb 28 2019 dd
-rwxr-xr-x 1 root root 55672 Feb 28 2019 df
-rwxr-xr-x 1 root root 88444 Feb 28 2019 dir
-rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg
lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
-rwxr-xr-x 1 root root 22364 Feb 28 2019 echo
-rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
-rwxr-xr-x 1 root root 18260 Feb 28 2019 false
-rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
-rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt
-rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount
-rwxr-xr-x 1 root root 124508 Jan 7 2019 grep
-rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
-rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
-rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip
-rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname
-rwxr-xr-x 1 root root 43044 Feb 28 2019 ln
-rwxr-xr-x 1 root root 34932 Jul 26 2018 login
-rwxr-xr-x 1 root root 88444 Feb 28 2019 ls
-rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk
-rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir
-rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod
-rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp
-rwxr-xr-x 1 root root 26024 Jan 9 2019 more
-rwsr-xr-x 1 root root 34268 Jan 9 2019 mount
-rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint
-rwxr-xr-x 1 root root 84284 Feb 28 2019 mv
lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd
lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
-rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink
-rwxr-xr-x 1 root root 42968 Feb 28 2019 rm
-rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir
-rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Aug 8 20:27 sh -> dash
-rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep
-rwxr-xr-x 1 root root 51124 Feb 28 2019 stty
-rwsr-xr-x 1 root root 42472 Jan 9 2019 su
-rwxr-xr-x 1 root root 22392 Feb 28 2019 sync
-rwxr-xr-x 1 root root 283324 Apr 23 2019 tar
-rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile
-rwxr-xr-x 1 root root 63464 Feb 28 2019 touch
-rwxr-xr-x 1 root root 18260 Feb 28 2019 true
-rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server
-rwsr-xr-x 1 root root 21976 Jan 9 2019 umount
-rwxr-xr-x 1 root root 22380 Feb 28 2019 uname
-rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
-rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir
-rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl
-rwxr-xr-x 1 root root 946 Jan 21 2019 which
lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
-rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
-rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
-rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
-rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
-rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
-rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
-rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
-rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
-rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
I: user script /srv/workspace/pbuilder/9857/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 12~), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-pandas, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on cython; however:
Package cython is not installed.
pbuilder-satisfydepends-dummy depends on python-dev; however:
Package python-dev is not installed.
pbuilder-satisfydepends-dummy depends on python-numpy; however:
Package python-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python-scipy; however:
Package python-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python-h5py; however:
Package python-h5py is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
pbuilder-satisfydepends-dummy depends on python-click; however:
Package python-click is not installed.
pbuilder-satisfydepends-dummy depends on python-cogent; however:
Package python-cogent is not installed.
pbuilder-satisfydepends-dummy depends on python-future; however:
Package python-future is not installed.
pbuilder-satisfydepends-dummy depends on python-nose; however:
Package python-nose is not installed.
pbuilder-satisfydepends-dummy depends on python-pandas; however:
Package python-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python-setuptools; however:
Package python-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on bash-completion; however:
Package bash-completion is not installed.
pbuilder-satisfydepends-dummy depends on cython3; however:
Package cython3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-click; however:
Package python3-click is not installed.
pbuilder-satisfydepends-dummy depends on python3-future; however:
Package python3-future is not installed.
pbuilder-satisfydepends-dummy depends on python3-h5py; however:
Package python3-h5py is not installed.
pbuilder-satisfydepends-dummy depends on python3-nose; however:
Package python3-nose is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-pandas; however:
Package python3-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-scipy; however:
Package python3-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinx; however:
Package python3-sphinx is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdmainutils{a} ca-certificates{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103{a} libicu63{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpng16-16{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-babel-localedata{a} python-backports.functools-lru-cache{a} python-click{a} python-cogent{a} python-colorama{a} python-configparser{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-dev{a} python-future{a} python-h5py{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib2-data{a} python-minimal{a} python-nose{a} python-numpy{a} python-pandas{a} python-pandas-lib{a} python-pkg-resources{a} python-pyparsing{a} python-scipy{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-future{a} python3-h5py{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} ttf-bitstream-vera{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
blast2 cd-hit clearcut curl dialign javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libpaper-utils lynx muscle python-bs4 python-html5lib python-lxml python-numexpr python-openpyxl python-pil python-statsmodels python-tables python-tk python-xlrd python-xlwt python3-bs4 python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-pil python3-tables shared-mime-info wget xdg-user-dirs
0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded.
Need to get 173 MB of archives. After unpacking 476 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf liblocale-gettext-perl armhf 1.07-3+b4 [18.4 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u2 [582 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf python3.7-minimal armhf 3.7.3-2+deb10u2 [1466 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libmpdec2 armhf 2.4.2-2 [69.3 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u2 [1660 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf python3.7 armhf 3.7.3-2+deb10u2 [330 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf sgml-base all 1.29 [14.8 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf bash-completion all 1:2.8-6 [208 kB]
Get: 34 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 35 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 36 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 37 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 38 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 39 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 40 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 41 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 42 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 43 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 44 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB]
Get: 45 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB]
Get: 46 http://deb.debian.org/debian buster/main armhf cython armhf 0.29.2-2 [1306 kB]
Get: 47 http://deb.debian.org/debian buster/main armhf cython3 armhf 0.29.2-2 [1330 kB]
Get: 48 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 49 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 50 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 51 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 52 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 53 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 54 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 55 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 56 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 57 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 58 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 59 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 60 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 61 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 62 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 63 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Get: 64 http://deb.debian.org/debian buster/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB]
Get: 65 http://deb.debian.org/debian buster/main armhf python3-distutils all 3.7.3-1 [142 kB]
Get: 66 http://deb.debian.org/debian buster/main armhf dh-python all 3.20190308 [99.3 kB]
Get: 67 http://deb.debian.org/debian buster/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get: 68 http://deb.debian.org/debian buster/main armhf docutils-common all 0.14+dfsg-4 [167 kB]
Get: 69 http://deb.debian.org/debian buster/main armhf fonts-lyx all 2.3.2-1 [199 kB]
Get: 70 http://deb.debian.org/debian buster/main armhf help2man armhf 1.47.8 [176 kB]
Get: 71 http://deb.debian.org/debian buster/main armhf libaec0 armhf 1.0.2-1 [21.9 kB]
Get: 72 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB]
Get: 73 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB]
Get: 74 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB]
Get: 75 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB]
Get: 76 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB]
Get: 77 http://deb.debian.org/debian buster/main armhf libsz2 armhf 1.0.2-1 [6584 B]
Get: 78 http://deb.debian.org/debian buster/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1285 kB]
Get: 79 http://deb.debian.org/debian buster/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get: 80 http://deb.debian.org/debian buster/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get: 81 http://deb.debian.org/debian buster/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get: 82 http://deb.debian.org/debian buster/main armhf libjs-sphinxdoc all 1.8.4-1 [95.9 kB]
Get: 83 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB]
Get: 84 http://deb.debian.org/debian buster/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [892 kB]
Get: 85 http://deb.debian.org/debian buster/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [31.0 MB]
Get: 86 http://deb.debian.org/debian buster/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get: 87 http://deb.debian.org/debian buster/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get: 88 http://deb.debian.org/debian buster/main armhf libpython3.7 armhf 3.7.3-2+deb10u2 [1281 kB]
Get: 89 http://deb.debian.org/debian buster/main armhf libpython3.7-dev armhf 3.7.3-2+deb10u2 [47.2 MB]
Get: 90 http://deb.debian.org/debian buster/main armhf libpython3-dev armhf 3.7.3-1 [20.1 kB]
Get: 91 http://deb.debian.org/debian buster/main armhf libpython3-all-dev armhf 3.7.3-1 [1068 B]
Get: 92 http://deb.debian.org/debian buster/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get: 93 http://deb.debian.org/debian buster/main armhf python-backports.functools-lru-cache all 1.5-3 [6704 B]
Get: 94 http://deb.debian.org/debian buster/main armhf python-colorama all 0.3.7-1 [25.7 kB]
Get: 95 http://deb.debian.org/debian buster/main armhf python-click all 7.0-1 [73.5 kB]
Get: 96 http://deb.debian.org/debian buster/main armhf python-pkg-resources all 40.8.0-1 [182 kB]
Get: 97 http://deb.debian.org/debian buster/main armhf python-numpy armhf 1:1.16.2-1 [1885 kB]
Get: 98 http://deb.debian.org/debian buster/main armhf python-six all 1.12.0-1 [15.7 kB]
Get: 99 http://deb.debian.org/debian buster/main armhf python-dateutil all 2.7.3-3 [76.8 kB]
Get: 100 http://deb.debian.org/debian buster/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get: 101 http://deb.debian.org/debian buster/main armhf python-matplotlib2-data all 2.2.3-6 [4124 kB]
Get: 102 http://deb.debian.org/debian buster/main armhf python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB]
Get: 103 http://deb.debian.org/debian buster/main armhf python-tz all 2019.1-1 [33.6 kB]
Get: 104 http://deb.debian.org/debian buster/main armhf python-cycler all 0.10.0-1 [7448 B]
Get: 105 http://deb.debian.org/debian buster/main armhf python-kiwisolver armhf 1.0.1-2+b1 [61.0 kB]
Get: 106 http://deb.debian.org/debian buster/main armhf python-subprocess32 armhf 3.5.3-1 [28.8 kB]
Get: 107 http://deb.debian.org/debian buster/main armhf python-matplotlib armhf 2.2.3-6 [5014 kB]
Get: 108 http://deb.debian.org/debian buster/main armhf python-cogent armhf 1.9-14 [2441 kB]
Get: 109 http://deb.debian.org/debian buster/main armhf python-configparser all 3.5.0b2-1 [59.2 kB]
Get: 110 http://deb.debian.org/debian buster/main armhf python-decorator all 4.3.0-1.1 [14.4 kB]
Get: 111 http://deb.debian.org/debian buster/main armhf python2.7-dev armhf 2.7.16-2+deb10u1 [291 kB]
Get: 112 http://deb.debian.org/debian buster/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get: 113 http://deb.debian.org/debian buster/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get: 114 http://deb.debian.org/debian buster/main armhf python-future all 0.16.0-1 [348 kB]
Get: 115 http://deb.debian.org/debian buster/main armhf python-h5py armhf 2.8.0-3 [611 kB]
Get: 116 http://deb.debian.org/debian buster/main armhf python-nose all 1.3.7-4 [132 kB]
Get: 117 http://deb.debian.org/debian buster/main armhf python-pandas-lib armhf 0.23.3+dfsg-3 [3055 kB]
Get: 118 http://deb.debian.org/debian buster/main armhf python-pandas all 0.23.3+dfsg-3 [1750 kB]
Get: 119 http://deb.debian.org/debian buster/main armhf python-scipy armhf 1.1.0-7 [9136 kB]
Get: 120 http://deb.debian.org/debian buster/main armhf python-setuptools all 40.8.0-1 [382 kB]
Get: 121 http://deb.debian.org/debian buster/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get: 122 http://deb.debian.org/debian buster/main armhf python3-all armhf 3.7.3-1 [1068 B]
Get: 123 http://deb.debian.org/debian buster/main armhf python3.7-dev armhf 3.7.3-2+deb10u2 [509 kB]
Get: 124 http://deb.debian.org/debian buster/main armhf python3-dev armhf 3.7.3-1 [1264 B]
Get: 125 http://deb.debian.org/debian buster/main armhf python3-all-dev armhf 3.7.3-1 [1064 B]
Get: 126 http://deb.debian.org/debian buster/main armhf python3-pkg-resources all 40.8.0-1 [153 kB]
Get: 127 http://deb.debian.org/debian buster/main armhf python3-tz all 2019.1-1 [27.1 kB]
Get: 128 http://deb.debian.org/debian buster/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get: 129 http://deb.debian.org/debian buster/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get: 130 http://deb.debian.org/debian buster/main armhf python3-chardet all 3.0.4-3 [80.5 kB]
Get: 131 http://deb.debian.org/debian buster/main armhf python3-colorama all 0.3.7-1 [18.1 kB]
Get: 132 http://deb.debian.org/debian buster/main armhf python3-click all 7.0-1 [73.6 kB]
Get: 133 http://deb.debian.org/debian buster/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get: 134 http://deb.debian.org/debian buster/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get: 135 http://deb.debian.org/debian buster/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get: 136 http://deb.debian.org/debian buster/main armhf python3-roman all 2.0.0-3 [8768 B]
Get: 137 http://deb.debian.org/debian buster/main armhf python3-docutils all 0.14+dfsg-4 [378 kB]
Get: 138 http://deb.debian.org/debian buster/main armhf python3-future all 0.16.0-1 [346 kB]
Get: 139 http://deb.debian.org/debian buster/main armhf python3-numpy armhf 1:1.16.2-1 [1903 kB]
Get: 140 http://deb.debian.org/debian buster/main armhf python3-h5py armhf 2.8.0-3 [834 kB]
Get: 141 http://deb.debian.org/debian buster/main armhf python3-idna all 2.6-1 [34.3 kB]
Get: 142 http://deb.debian.org/debian buster/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get: 143 http://deb.debian.org/debian buster/main armhf python3-markupsafe armhf 1.1.0-1 [14.2 kB]
Get: 144 http://deb.debian.org/debian buster/main armhf python3-jinja2 all 2.10-2 [106 kB]
Get: 145 http://deb.debian.org/debian buster/main armhf python3-nose all 1.3.7-4 [132 kB]
Get: 146 http://deb.debian.org/debian buster/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get: 147 http://deb.debian.org/debian buster/main armhf python3-packaging all 19.0-1 [20.5 kB]
Get: 148 http://deb.debian.org/debian buster/main armhf python3-pandas-lib armhf 0.23.3+dfsg-3 [3132 kB]
Get: 149 http://deb.debian.org/debian buster/main armhf python3-pandas all 0.23.3+dfsg-3 [1750 kB]
Get: 150 http://deb.debian.org/debian buster/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get: 151 http://deb.debian.org/debian buster/main armhf python3-urllib3 all 1.24.1-1 [97.1 kB]
Get: 152 http://deb.debian.org/debian buster/main armhf python3-requests all 2.21.0-1 [66.9 kB]
Get: 153 http://deb.debian.org/debian buster/main armhf python3-scipy armhf 1.1.0-7 [9090 kB]
Get: 154 http://deb.debian.org/debian buster/main armhf python3-setuptools all 40.8.0-1 [306 kB]
Get: 155 http://deb.debian.org/debian buster/main armhf sphinx-common all 1.8.4-1 [500 kB]
Get: 156 http://deb.debian.org/debian buster/main armhf python3-sphinx all 1.8.4-1 [481 kB]
Fetched 173 MB in 18s (9367 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:armhf.
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Updating certificates in /etc/ssl/certs...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode
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update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
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update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
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update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
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Setting up python3-sphinx (1.8.4-1) ...
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update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Processing triggers for ca-certificates (20190110) ...
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0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
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Initializing package states...
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-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
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fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/python-biom-format-2.1.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.7+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p 2.7
I: pybuild base:217: python2.7 setup.py clean
running clean
removing '/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
pybuild --clean --test-nose -i python{version} -p 3.7
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars debian/files
rm -fr -- debian/python-biom-format/ debian/tmp/ debian/python3-biom-format/ debian/python-biom-format-doc/ debian/biom-format-tools/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build
dh build --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 2.7
I: pybuild base:217: python2.7 setup.py config
running config
pybuild --configure --test-nose -i python{version} -p 3.7
I: pybuild base:217: python3.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build --test-nose -i python{version} -p 2.7
I: pybuild base:217: /usr/bin/python setup.py build
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-biom-format-2.1.7+dfsg/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running build
running build_py
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli
running egg_info
creating biom_format.egg-info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-armhf-2.7/biom/_filter.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:632:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_filter.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-armhf-2.7/biom/_transform.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:632:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_transform.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-armhf-2.7/biom/_subsample.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:632:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_subsample.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.so
pybuild --build --test-nose -i python{version} -p 3.7
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
creating /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-armhf-3.7/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:632:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_filter.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-armhf-3.7/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:632:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_transform.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-armhf-3.7/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:632:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_subsample.o -o /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v1.8.4
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom.table': no module named biom.table
Failed to import 'biom': no module named biom
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/build/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices...
writing additional pages... search
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v1.8.4
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom.table': no module named biom.table
Failed to import 'biom': no module named biom
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
cp -a examples /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build
cp -a examples /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build
dh_auto_test
pybuild --test --test-nose -i python{version} -p 2.7
I: pybuild base:217: cd /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build; python2.7 -m nose -v
Correctly adds observation metadata without casting it. ... ok
Correctly adds observation metadata with casting. ... ok
Correctly adds sample metadata without casting it. ... ok
Correctly adds sample metadata with casting. ... ok
test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok
Correctly raises politically correct error upon invalid input. ... ok
Correctly subsets observations in a table. ... ok
Correctly subsets samples in a hdf5 table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
ok
Correctly subsets samples in a table. ... ok
Correctly subsets samples in a hdf5 table ... ok
TableSummarizer functions as expected ... ok
TableSummarizer functions as expected with qualitative=True ... ok
Correctly converts biom to classic. ... ok
Correctly converts biom to classic with metadata renaming. ... ok
Correctly converts classic to biom. ... ok
Correctly converts classic to biom with metadata. ... ok
Correctly converts json to HDF5 changing the observation metadata ... ok
Correctly converts json to HDF5 changing the sample metadata ... ok
test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok
test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
Correctly invalidates a table that is... invalid. ... ok
Test an invalid HDF5 table ... ok
test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Correctly validates a table that is indeed... valid. ... ok
validates table:columns: fields ... ok
validates data: fields ... ok
Make sure we have a datetime stamp ... ok
Takes a dense matrix field and validates ... ok
Should match format string ... ok
validates format url ... ok
Should have some string for generated by ... ok
Test a valid HDF5 table ... ok
test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Make sure we have a valid matrix type ... ok
Make sure we have a valid matrix type ... ok
Can be nullable or an object ... ok
Should just work. ... ok
validates rows: field ... ok
validates shape information ... ok
Takes a sparse matrix field and validates ... ok
Should be valid table type ... ok
test_test_empty (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok
test_contains (biom.tests.test_err.ErrorProfileTests) ... ok
test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok
test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok
test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_state (biom.tests.test_err.ErrorProfileTests) ... ok
test_test (biom.tests.test_err.ErrorProfileTests) ... ok
test_errcheck (biom.tests.test_err.SupportTests) ... ok
test_errstate (biom.tests.test_err.SupportTests) ... ok
test_geterr (biom.tests.test_err.SupportTests) ... ok
test_geterrcall (biom.tests.test_err.SupportTests) ... ok
test_seterr (biom.tests.test_err.SupportTests) ... ok
test_seterrcall (biom.tests.test_err.SupportTests) ... ok
test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok
get a generatedby string ... ok
MetadataMap functions as expected ... ok
MetadataMap functions as expected w user-provided header ... ok
MetadataMap functions as expected w process_fns ... ok
test the biom otu table parser ... ok
tests for parse_biom_table when we do not have h5py ... ok
Make sure we can parse a HDF5 table through the same loader ... ok
test the biom table parser subsetting ... ok
tests for parse_biom_table when we have h5py ... ok
empty uc file returns empty Table ... ok
invalid query sequence identifier detected ... ok
single library seed observed ... ok
single new seed observed ... ok
new and library seeds observed ... ok
multiple new seeds observed ... ok
sample id with underscores is correctly processed ... ok
Yield tables binned by observation metadata ... ok
Yield tables binned by sample metadata ... ok
test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok
Collapse observations by arbitrary metadata ... ok
Collapse observations by arbitary metadata ... ok
Collapse observations by 1-M metadata using divide mode ... ok
Collapse observations by arbitary metadata ... ok
Collapse samples by arbitrary metadata ... ok
Collapse samples by arbitary metadata ... ok
Collapse samples by 1-M metadata using divide mode ... ok
Collapse samples by arbitary metadata ... ok
Should convert other to sparse type ... ok
test_copy_data (biom.tests.test_table.SparseTableTests) ... ok
test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok
test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_data (biom.tests.test_table.SparseTableTests) ... ok
check equality between tables ... ok
test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Print out self in a delimited form ... ok
sparse equality ... ok
Parses a classic table ... ok
test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok
test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok
test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok
test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok
test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok
Test correctly computes density of table. ... ok
test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok
Should iterate over samples ... ok
test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok
test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Iterate over observations of sparse matrix ... ok
Iterates data by observations ... ok
Iterates data by observations from a single sample. ... ok
Iterates observations ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Iterate over samples of sparse matrix ... ok
Iterates data by samples ... ok
Iterates data by samples with a single observation. ... ok
Iterates samples ... ok
Merge two tables ... ok
Return a list of nonzero positions ... ok
Returns nonzero counts over an axis ... ok
Returns nonzero counts over an axis ... ok
test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok
normalize observations by sample ... ok
normalize sample by observation ... ok
test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok
test_pa (biom.tests.test_table.SparseTableTests) ... ok
test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok
test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok
rank observations by sample ... ok
rank observations by sample with alt method ... ok
rank samples by observation ... ok
Reduce method ... ok
table sorted by a function and provided axis ... ok
sorts tables by arbitrary order ... ok
test_subsample (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok
subsample would except when if metadata were present ... ok
test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
Test of sum! ... ok
Should convert a self styled vector to numpy type ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of integers ... ok
Get a BIOM format string for a dense table of integers ... ok
test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of integers ... ok
Get a BIOM format string for a sparse table of integers ... ok
Transform axis by arbitrary function ... ok
test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok
Should transpose a sparse table ... ok
ids are updated as expected ... ok
test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok
ids are updated as expected ... ok
test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_different_order (biom.tests.test_table.SupportTests) ... ok
test_concat_empty (biom.tests.test_table.SupportTests) ... ok
test_concat_multiple (biom.tests.test_table.SupportTests) ... ok
test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok
test_concat_observations (biom.tests.test_table.SupportTests) ... ok
test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok
test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_samples (biom.tests.test_table.SupportTests) ... ok
test_concat_table_type (biom.tests.test_table.SupportTests) ... ok
test_head (biom.tests.test_table.SupportTests) ... ok
test_head_bounded (biom.tests.test_table.SupportTests) ... ok
test_head_overstep (biom.tests.test_table.SupportTests) ... ok
test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok
returns a dict for list lookups ... ok
prefer x ... ok
test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python2.7/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
SparseEfficiencyWarning)
ok
test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok
Make sure a TableException can be raised ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
convert (values, (row, col)) to scipy ... ok
Take a dict and convert to sparse ... ok
Take a list of dicts and condense down to a single dict ... ok
convert [[row,col,value], ...] to scipy ... ok
lists of nparrays to sparse ... ok
list of lil_matrix to sparse ... ok
Convert nparray to sparse ... ok
Convert to expected sparse types ... ok
add group metadata works correctly ... ok
add group metadata works with existing metadata ... ok
add_sample_metadata functions with single md entry ... ok
add_sample_metadata functions with existing metadata ... ok
add_metadata functions with more than one md entry ... ok
add_sample_metadata functions with more than one md entry ... ok
test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok
Cast metadata objects to defaultdict to support default values ... ok
Properly converts ScipySparseMat vectors to dense numpy repr. ... ok
test_data_property (biom.tests.test_table.TableTests) ... ok
test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok
test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok
test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok
test_del_metadata_full (biom.tests.test_table.TableTests) ... ok
test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok
test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok
test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok
test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok
test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok
What's your type? ... ok
Test whether two matrices are equal. ... ok
Verify ValueError raised! ... ok
Parse a hdf5 formatted BIOM table ... ok
test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... ok
Parse a hdf5 formatted BIOM table w/o metadata ... ok
HDF5 biom parse successfully loads an empty table ... ok
test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... ok
test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok
Parse a observation subset of a hdf5 formatted BIOM table ... ok
Parse a observation subset of a hdf5 formatted BIOM table ... ok
Parse a sample subset of a hdf5 formatted BIOM table ... ok
Parse a sample subset of a hdf5 formatted BIOM table ... ok
hdf5 biom table parse throws error with invalid parameters ... ok
test_from_tsv (biom.tests.test_table.TableTests) ... ok
test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok
Test grabbing a column from the matrix. ... ok
Test grabbing a row from the matrix. ... ok
Return the value located in the matrix by the ids ... ok
getitem should work as expeceted ... ok
Test getting an element from the matrix. ... ok
Handles invalid input ... ok
Returns the observation group metadata ... ok
Returns the sample group metadata ... ok
Index all the ids!!! ... ok
Correctly handles invalid input. ... ok
returns the observation index ... ok
returns the sample index ... ok
to_sparse in constructor should be triggered ... ok
Combine ids, intersection ... ok
returns true if empty ... ok
test_length (biom.tests.test_table.TableTests) ... ok
test_max_observation (biom.tests.test_table.TableTests) ... ok
test_max_sample (biom.tests.test_table.TableTests) ... ok
test_max_whole (biom.tests.test_table.TableTests) ... ok
Correctly handles invalid input. ... ok
returns the observation metadata ... ok
returns the observation metadata for a given id ... ok
Return the sample metadata ... ok
returns the sample metadata for a given id ... ok
test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok
test_min_observation (biom.tests.test_table.TableTests) ... ok
test_min_sample (biom.tests.test_table.TableTests) ... ok
test_min_whole (biom.tests.test_table.TableTests) ... ok
Test whether two matrices are not equal. ... ok
What is your NNZ? ... ok
test_nnz_issue_727 (biom.tests.test_table.TableTests) ... ok
Verify observation exist! ... ok
__repr__ method of biom.table.Table ... ok
Verify samples exist! ... ok
What kind of shape are you in? ... ok
test_to_dataframe (biom.tests.test_table.TableTests) ... ok
test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok
Write a file ... ok
test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok
Print out self in a delimited form ... ok
Combine unique ids, union ... ok
Make sure the metadata is sane (including obs/sample ids) ... ok
test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY
test_biom_open_json (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
flatten should remove one level of nesting from nested sequences ... ok
flatten should not change non-nested sequences (except to list) ... ok
test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok
Getting the biom project directory functions as expected. ... ok
test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok
test_load_classic (biom.tests.test_util.UtilTests) ... ok
test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok
test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok
natsort should perform numeric comparisons on strings ... ok
parse_biom_config_files functions as expected. ... ok
Make sure we have the expected md5 with varied input types ... ok
unzip(items) should be the inverse of zip(*items) ... ok
----------------------------------------------------------------------
Ran 336 tests in 69.228s
OK (SKIP=1)
pybuild --test --test-nose -i python{version} -p 3.7
I: pybuild base:217: cd /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build; python3.7 -m nose -v
Correctly adds observation metadata without casting it. ... ok
Correctly adds observation metadata with casting. ... ok
Correctly adds sample metadata without casting it. ... ok
Correctly adds sample metadata with casting. ... ok
test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok
Correctly raises politically correct error upon invalid input. ... ok
Correctly subsets observations in a table. ... ok
Correctly subsets samples in a hdf5 table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
ok
Correctly subsets samples in a table. ... ok
Correctly subsets samples in a hdf5 table ... ok
TableSummarizer functions as expected ... ok
TableSummarizer functions as expected with qualitative=True ... ok
Correctly converts biom to classic. ... ok
Correctly converts biom to classic with metadata renaming. ... ok
Correctly converts classic to biom. ... ok
Correctly converts classic to biom with metadata. ... ok
Correctly converts json to HDF5 changing the observation metadata ... ok
Correctly converts json to HDF5 changing the sample metadata ... ok
test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok
test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
Correctly invalidates a table that is... invalid. ... ok
Test an invalid HDF5 table ... ok
test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Correctly validates a table that is indeed... valid. ... ok
validates table:columns: fields ... ok
validates data: fields ... ok
Make sure we have a datetime stamp ... ok
Takes a dense matrix field and validates ... ok
Should match format string ... ok
validates format url ... ok
Should have some string for generated by ... ok
Test a valid HDF5 table ... ok
test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Make sure we have a valid matrix type ... ok
Make sure we have a valid matrix type ... ok
Can be nullable or an object ... ok
Should just work. ... ok
validates rows: field ... ok
validates shape information ... ok
Takes a sparse matrix field and validates ... ok
Should be valid table type ... ok
test_test_empty (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok
test_contains (biom.tests.test_err.ErrorProfileTests) ... ok
test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok
test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok
test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_state (biom.tests.test_err.ErrorProfileTests) ... ok
test_test (biom.tests.test_err.ErrorProfileTests) ... ok
test_errcheck (biom.tests.test_err.SupportTests) ... ok
test_errstate (biom.tests.test_err.SupportTests) ... ok
test_geterr (biom.tests.test_err.SupportTests) ... ok
test_geterrcall (biom.tests.test_err.SupportTests) ... ok
test_seterr (biom.tests.test_err.SupportTests) ... ok
test_seterrcall (biom.tests.test_err.SupportTests) ... ok
test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok
get a generatedby string ... ok
MetadataMap functions as expected ... ok
MetadataMap functions as expected w user-provided header ... ok
MetadataMap functions as expected w process_fns ... ok
test the biom otu table parser ... ok
tests for parse_biom_table when we do not have h5py ... ok
Make sure we can parse a HDF5 table through the same loader ... ok
test the biom table parser subsetting ... ok
tests for parse_biom_table when we have h5py ... ok
empty uc file returns empty Table ... ok
invalid query sequence identifier detected ... ok
single library seed observed ... ok
single new seed observed ... ok
new and library seeds observed ... ok
multiple new seeds observed ... ok
sample id with underscores is correctly processed ... ok
Yield tables binned by observation metadata ... ok
Yield tables binned by sample metadata ... ok
test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok
Collapse observations by arbitrary metadata ... ok
Collapse observations by arbitary metadata ... ok
Collapse observations by 1-M metadata using divide mode ... ok
Collapse observations by arbitary metadata ... ok
Collapse samples by arbitrary metadata ... ok
Collapse samples by arbitary metadata ... ok
Collapse samples by 1-M metadata using divide mode ... ok
Collapse samples by arbitary metadata ... ok
Should convert other to sparse type ... ok
test_copy_data (biom.tests.test_table.SparseTableTests) ... ok
test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok
test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_data (biom.tests.test_table.SparseTableTests) ... ok
check equality between tables ... ok
test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Print out self in a delimited form ... ok
sparse equality ... ok
Parses a classic table ... ok
test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok
test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok
test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok
test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok
test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok
Test correctly computes density of table. ... ok
test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok
Should iterate over samples ... ok
test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok
test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Iterate over observations of sparse matrix ... ok
Iterates data by observations ... ok
Iterates data by observations from a single sample. ... ok
Iterates observations ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Iterate over samples of sparse matrix ... ok
Iterates data by samples ... ok
Iterates data by samples with a single observation. ... ok
Iterates samples ... ok
Merge two tables ... ok
Return a list of nonzero positions ... ok
Returns nonzero counts over an axis ... ok
Returns nonzero counts over an axis ... ok
test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok
normalize observations by sample ... ok
normalize sample by observation ... ok
test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok
test_pa (biom.tests.test_table.SparseTableTests) ... ok
test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok
test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok
rank observations by sample ... ok
rank observations by sample with alt method ... ok
rank samples by observation ... ok
Reduce method ... ok
table sorted by a function and provided axis ... ok
sorts tables by arbitrary order ... ok
test_subsample (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok
subsample would except when if metadata were present ... ok
test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
Test of sum! ... ok
Should convert a self styled vector to numpy type ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of integers ... ok
Get a BIOM format string for a dense table of integers ... ok
test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of integers ... ok
Get a BIOM format string for a sparse table of integers ... ok
Transform axis by arbitrary function ... ok
test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok
Should transpose a sparse table ... ok
ids are updated as expected ... ok
test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok
ids are updated as expected ... ok
test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_different_order (biom.tests.test_table.SupportTests) ... ok
test_concat_empty (biom.tests.test_table.SupportTests) ... ok
test_concat_multiple (biom.tests.test_table.SupportTests) ... ok
test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok
test_concat_observations (biom.tests.test_table.SupportTests) ... ok
test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok
test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_samples (biom.tests.test_table.SupportTests) ... ok
test_concat_table_type (biom.tests.test_table.SupportTests) ... ok
test_head (biom.tests.test_table.SupportTests) ... ok
test_head_bounded (biom.tests.test_table.SupportTests) ... ok
test_head_overstep (biom.tests.test_table.SupportTests) ... ok
test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok
returns a dict for list lookups ... ok
prefer x ... ok
test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python3/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
SparseEfficiencyWarning)
ok
test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok
Make sure a TableException can be raised ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
convert (values, (row, col)) to scipy ... ok
Take a dict and convert to sparse ... ok
Take a list of dicts and condense down to a single dict ... ok
convert [[row,col,value], ...] to scipy ... ok
lists of nparrays to sparse ... ok
list of lil_matrix to sparse ... ok
Convert nparray to sparse ... ok
Convert to expected sparse types ... ok
add group metadata works correctly ... ok
add group metadata works with existing metadata ... ok
add_sample_metadata functions with single md entry ... ok
add_sample_metadata functions with existing metadata ... ok
add_metadata functions with more than one md entry ... ok
add_sample_metadata functions with more than one md entry ... ok
test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok
Cast metadata objects to defaultdict to support default values ... ok
Properly converts ScipySparseMat vectors to dense numpy repr. ... ok
test_data_property (biom.tests.test_table.TableTests) ... ok
test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok
test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok
test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok
test_del_metadata_full (biom.tests.test_table.TableTests) ... ok
test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok
test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok
test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok
test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok
test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok
What's your type? ... ok
Test whether two matrices are equal. ... ok
Verify ValueError raised! ... ok
Parse a hdf5 formatted BIOM table ... ok
test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... ok
Parse a hdf5 formatted BIOM table w/o metadata ... ok
HDF5 biom parse successfully loads an empty table ... ok
test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... ok
test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok
Parse a observation subset of a hdf5 formatted BIOM table ... /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
/build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
ok
Parse a observation subset of a hdf5 formatted BIOM table ... ok
Parse a sample subset of a hdf5 formatted BIOM table ... ok
Parse a sample subset of a hdf5 formatted BIOM table ... ok
hdf5 biom table parse throws error with invalid parameters ... ok
test_from_tsv (biom.tests.test_table.TableTests) ... ok
test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok
Test grabbing a column from the matrix. ... ok
Test grabbing a row from the matrix. ... ok
Return the value located in the matrix by the ids ... ok
getitem should work as expeceted ... ok
Test getting an element from the matrix. ... ok
Handles invalid input ... ok
Returns the observation group metadata ... ok
Returns the sample group metadata ... ok
Index all the ids!!! ... ok
Correctly handles invalid input. ... ok
returns the observation index ... ok
returns the sample index ... ok
to_sparse in constructor should be triggered ... ok
Combine ids, intersection ... ok
returns true if empty ... ok
test_length (biom.tests.test_table.TableTests) ... ok
test_max_observation (biom.tests.test_table.TableTests) ... ok
test_max_sample (biom.tests.test_table.TableTests) ... ok
test_max_whole (biom.tests.test_table.TableTests) ... ok
Correctly handles invalid input. ... ok
returns the observation metadata ... ok
returns the observation metadata for a given id ... ok
Return the sample metadata ... ok
returns the sample metadata for a given id ... ok
test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok
test_min_observation (biom.tests.test_table.TableTests) ... ok
test_min_sample (biom.tests.test_table.TableTests) ... ok
test_min_whole (biom.tests.test_table.TableTests) ... ok
Test whether two matrices are not equal. ... ok
What is your NNZ? ... ok
test_nnz_issue_727 (biom.tests.test_table.TableTests) ... /usr/lib/python3/dist-packages/scipy/sparse/compressed.py:747: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
SparseEfficiencyWarning)
ok
Verify observation exist! ... ok
__repr__ method of biom.table.Table ... ok
Verify samples exist! ... ok
What kind of shape are you in? ... ok
test_to_dataframe (biom.tests.test_table.TableTests) ... ok
test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok
Write a file ... ok
test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok
Print out self in a delimited form ... ok
Combine unique ids, union ... ok
Make sure the metadata is sane (including obs/sample ids) ... ok
test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY
test_biom_open_json (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
flatten should remove one level of nesting from nested sequences ... ok
flatten should not change non-nested sequences (except to list) ... ok
test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok
Getting the biom project directory functions as expected. ... ok
test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok
test_load_classic (biom.tests.test_util.UtilTests) ... ok
test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok
test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok
natsort should perform numeric comparisons on strings ... ok
parse_biom_config_files functions as expected. ... ok
Make sure we have the expected md5 with varied input types ... ok
unzip(items) should be the inverse of zip(*items) ... ok
----------------------------------------------------------------------
Ran 336 tests in 56.255s
OK (SKIP=1)
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars
rm -fr -- debian/.debhelper/generated/python-biom-format/ debian/python-biom-format/ debian/tmp/ debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ debian/.debhelper/generated/biom-format-tools/ debian/biom-format-tools/
rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
dh_auto_install
install -d /build/python-biom-format-2.1.7\+dfsg/debian/tmp
pybuild --install --test-nose -i python{version} -p 2.7 --dest-dir /build/python-biom-format-2.1.7\+dfsg/debian/tmp
I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format
running install
running build
running build_py
running egg_info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/min_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/obs_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/sam_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/examples
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/long_lines.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_add_metadata.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_converter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_uc_processor.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_validate_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_summarize_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_subset_table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_show_install_info.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_parse.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_err.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/tests/test_util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/exception.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/table.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/parse.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/err.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/uc_processor.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/installation_informer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_ids.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_normalizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/__init__.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_validator.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/metadata_adder.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/util.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_head.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_summarizer.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_converter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli/table_subsetter.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli
creating /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.so -> /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/util.py to util.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/__init__.py to __init__.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_data/__init__.py to __init__.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/long_lines.py to long_lines.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/__init__.py to __init__.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_parse.py to test_parse.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_err.py to test_err.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/__init__.py to __init__.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_util.py to test_util.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/tests/test_table.py to test_table.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/table.py to table.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/parse.py to parse.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/exception.py to exception.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/err.py to err.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/metadata_adder.py to metadata_adder.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_subsetter.py to table_subsetter.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/util.py to util.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_head.py to table_head.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/__init__.py to __init__.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/installation_informer.py to installation_informer.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_summarizer.py to table_summarizer.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/uc_processor.py to uc_processor.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_converter.py to table_converter.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_validator.py to table_validator.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_normalizer.py to table_normalizer.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_ids.py to table_ids.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets/exercise_api.py to exercise_api.pyc
running install_egg_info
Copying biom_format.egg-info to /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.7.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format/usr/bin
I: pybuild pybuild:298: dh_numpy
(grep -a -s -v python:Depends debian/python-biom-format.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python-biom-format.substvars.new
mv debian/python-biom-format.substvars.new debian/python-biom-format.substvars
(grep -a -s -v python:Depends debian/python3-biom-format.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python3-biom-format.substvars.new
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
(grep -a -s -v python:Depends debian/python-biom-format-doc.substvars; echo python:Depends=python-numpy) > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
(grep -a -s -v python:Depends debian/biom-format-tools.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/biom-format-tools.substvars.new
mv debian/biom-format-tools.substvars.new debian/biom-format-tools.substvars
pybuild --install --test-nose -i python{version} -p 3.7 --dest-dir /build/python-biom-format-2.1.7\+dfsg/debian/tmp
I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format
running install
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/obs_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/sam_md.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/parse.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/err.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/exception.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/empty.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/long_lines.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_parse.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/long_lines.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_err.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
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copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-arm-linux-gnueabihf.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/parse.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/exception.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-arm-linux-gnueabihf.so -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/err.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.c -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.pyx -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/metadata_adder.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_ids.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/__init__.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/util.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_converter.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_validator.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_head.cpython-37.pyc -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_subsetter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/util.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_head.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__init__.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/installation_informer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_summarizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/uc_processor.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_converter.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_validator.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_normalizer.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_ids.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
creating /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_api.py -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
copying /build/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_cli.sh -> /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/util.py to util.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__init__.py to __init__.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/long_lines.py to long_lines.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_parse.py to test_parse.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_err.py to test_err.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_util.py to test_util.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_table.py to test_table.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/table.py to table.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/parse.py to parse.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/exception.py to exception.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/err.py to err.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/util.py to util.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_head.py to table_head.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__init__.py to __init__.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_converter.py to table_converter.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_validator.py to table_validator.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_ids.py to table_ids.cpython-37.pyc
byte-compiling /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-37.pyc
running install_egg_info
Copying biom_format.egg-info to /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom_format-2.1.7.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /build/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/bin
I: pybuild pybuild:298: dh_numpy3
(grep -a -s -v python3:Depends debian/python-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python-biom-format.substvars.new
mv debian/python-biom-format.substvars.new debian/python-biom-format.substvars
(grep -a -s -v python3:Depends debian/python3-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biom-format.substvars.new
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
(grep -a -s -v python3:Depends debian/python-biom-format-doc.substvars; echo python3:Depends=python3-numpy) > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
(grep -a -s -v python3:Depends debian/biom-format-tools.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/biom-format-tools.substvars.new
mv debian/biom-format-tools.substvars.new debian/biom-format-tools.substvars
# Install command-line scripts in separate tools package.
dh_install --sourcedir=debian/python3-biom-format \
--package=biom-format-tools usr/bin
install -d debian/.debhelper/generated/python-biom-format
install -d debian/.debhelper/generated/python3-biom-format
install -d debian/.debhelper/generated/python-biom-format-doc
install -d debian/biom-format-tools//usr
cp --reflink=auto -a debian/python3-biom-format/usr/bin debian/biom-format-tools//usr/
install -d debian/.debhelper/generated/biom-format-tools
rm -rf debian/python-biom-format/usr/bin
rm -rf debian/python3-biom-format/usr/bin
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
dh_installdocs --indep
install -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc
install -d debian/python-biom-format-doc/usr/share/doc/python-biom-format
cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biom-format-2.1.7+dfsg/debian/python-biom-format-doc/usr/share/doc/python-biom-format
chown -R 0:0 debian/python-biom-format-doc/usr/share/doc
chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc
install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright
install -d debian/python-biom-format-doc/usr/share/doc-base/
install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format
dh_sphinxdoc --indep
ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js
ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js
dh_sphinxdoc: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/copybutton.js
ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js
ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js
rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/.doctrees
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/.buildinfo
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/websupport.js
(grep -a -s -v sphinxdoc:Depends debian/python-biom-format-doc.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0)") > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
(grep -a -s -v sphinxdoc:Built-Using debian/python-biom-format-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 1.8.4-1)") > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc
install -d debian/python-biom-format/usr/share/doc/python-biom-format
install -p -m0644 debian/copyright debian/python-biom-format/usr/share/doc/python-biom-format/copyright
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -d debian/biom-format-tools/usr/share/doc/biom-format-tools
install -p -m0644 debian/copyright debian/biom-format-tools/usr/share/doc/biom-format-tools/copyright
dh_sphinxdoc -O--buildsystem=pybuild
dh_sphinxdoc: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/copybutton.js
(grep -a -s -v sphinxdoc:Built-Using debian/python-biom-format-doc.substvars; echo "sphinxdoc:Built-Using=sphinx (= 1.8.4-1)") > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
dh_installchangelogs -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python-biom-format/usr/share/doc/python-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python-biom-format/usr/share/doc/python-biom-format/changelog
install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
install -p -m0644 debian/changelog debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog
install -p -m0644 debian/changelog debian/biom-format-tools/usr/share/doc/biom-format-tools/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/biom-format-tools/usr/share/doc/biom-format-tools/changelog
rm -f debian/python-biom-format-doc.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
dh_installexamples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# remove tests from Python2 package, move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
dh_python2 -O--buildsystem=pybuild
D: dh_python2 dh_python2:393: version: 3.20190308
D: dh_python2 dh_python2:394: argv: ['/usr/share/dh-python/dh_python2', '-O--buildsystem=pybuild']
D: dh_python2 dh_python2:395: options: {'guess_versions': True, 'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'namespaces': None, 'clean_pycentral': False, 'shebang': None, 'ignore_shebangs': False, 'ignore_namespace': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python2 dh_python2:396: args: []
D: dh_python2 dh_python2:398: supported Python versions: 2.7 (default=2.7)
D: dh_python2 debhelper:107: skipping package: python3-biom-format
D: dh_python2 debhelper:100: skipping package biom-format-tools (missing ${python:Depends} in Depends)
D: dh_python2 debhelper:153: source=python-biom-format, binary packages=['python-biom-format', 'python-biom-format-doc']
D: dh_python2 dh_python2:415: processing package python-biom-format...
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/__init__.pyc
D: dh_python2 tools:232: invoking: /usr/bin/python2.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
I: dh_python2 fs:343: renaming _filter.so to _filter.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming _subsample.so to _subsample.arm-linux-gnueabihf.so
I: dh_python2 fs:343: renaming _transform.so to _transform.arm-linux-gnueabihf.so
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/err.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/exception.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/parse.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/table.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/util.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/__init__.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/installation_informer.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/metadata_adder.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_converter.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_head.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_ids.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_normalizer.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_subsetter.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_summarizer.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/table_validator.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/uc_processor.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/cli/util.pyc
D: dh_python2 fs:209: removing unwanted: debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/assets/exercise_api.pyc
D: dh_python2 fs:260: package python-biom-format details = {'requires.txt': {'debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.7.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()}
D: dh_python2 depends:114: generating dependencies for package python-biom-format
D: dh_python2 pydist:138: trying to find dependency for click (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for future>=0.16.0 (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for numpy>=1.9.2 (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for pandas>=0.20.0 (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for pyqi (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for scipy>=0.13.0 (python=2.7)
D: dh_python2 pydist:138: trying to find dependency for six>=1.10.0 (python=2.7)
D: dh_python2 depends:272: D={'python-pandas', 'python-click', 'python-numpy', 'python:any', 'python:any (<< 2.8)', 'python (<< 2.8)', 'python (>= 2.7~)', 'python-six (>= 1.10.0)', 'pyqi', 'python-scipy', 'python-future', 'python:any (>= 2.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python2 dh_python2:415: processing package python-biom-format-doc...
D: dh_python2 fs:260: package python-biom-format-doc details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python2 depends:114: generating dependencies for package python-biom-format-doc
D: dh_python2 depends:272: D=set(); R=[]; S=[]; E=[], B=[]; RT=[]
dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 3.20190308
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7)
D: dh_python3 debhelper:107: skipping package: python-biom-format
D: dh_python3 debhelper:107: skipping package: python-biom-format-doc
D: dh_python3 debhelper:153: source=python-biom-format, binary packages=['python3-biom-format', 'biom-format-tools']
D: dh_python3 dh_python3:183: processing package python3-biom-format...
D: dh_python3 fs:49: moving files from debian/python3-biom-format/usr/lib/python3.7/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:260: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.7.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()}
D: dh_python3 depends:114: generating dependencies for package python3-biom-format
D: dh_python3 pydist:138: trying to find dependency for click (python=None)
D: dh_python3 pydist:138: trying to find dependency for future>=0.16.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:138: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for scipy>=0.13.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for six>=1.10.0 (python=None)
D: dh_python3 depends:272: D={'python3 (<< 3.8)', 'python3-scipy', 'python3 (>= 3.7~)', 'python3:any', 'python3-future', 'python3-pandas', 'python3-six (>= 1.10.0)', 'python3-numpy', 'python3-click'}; R=[]; S=[]; E=[], B=[]; RT=[]
D: dh_python3 dh_python3:183: processing package biom-format-tools...
D: dh_python3 fs:260: package biom-format-tools details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:114: generating dependencies for package biom-format-tools
D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installinit -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js
ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/underscore.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js
ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/doctools.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js
ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/searchtools.js
rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js
ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/jquery.js
dh_strip_nondeterminism -O--buildsystem=pybuild
Using 1550092427 as canonical time
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/down-pressed.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment-bright.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/plus.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_images/biom-format.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/down.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/biom-format.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/file.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/bg-page.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/comment-close.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/up-pressed.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/up.png using File::StripNondeterminism::handlers::png
Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format/html/_static/minus.png using File::StripNondeterminism::handlers::png
dh_compress -O--buildsystem=pybuild
cd debian/python-biom-format
cd debian/python-biom-format-doc
chmod a-x usr/share/doc/python-biom-format/changelog usr/share/doc/python-biom-format/changelog.Debian
chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian
gzip -9nf usr/share/doc/python-biom-format/changelog usr/share/doc/python-biom-format/changelog.Debian
gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian
cd '/build/python-biom-format-2.1.7+dfsg'
cd '/build/python-biom-format-2.1.7+dfsg'
cd debian/python3-biom-format
cd debian/biom-format-tools
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian
chmod a-x usr/share/doc/biom-format-tools/changelog usr/share/doc/biom-format-tools/changelog.Debian
cd '/build/python-biom-format-2.1.7+dfsg'
gzip -9nf usr/share/doc/biom-format-tools/changelog usr/share/doc/biom-format-tools/changelog.Debian
cd '/build/python-biom-format-2.1.7+dfsg'
rm -f debian/biom-format-tools.debhelper.log debian/python-biom-format-doc.debhelper.log debian/python-biom-format.debhelper.log debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/python-biom-format-2.1.7+dfsg'
dh_fixperms
find debian/python-biom-format -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/python-biom-format-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/python-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/python3-biom-format -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/biom-format-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/biom-format-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/biom-format-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/biom-format-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/biom-format-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/biom-format-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/biom-format-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/python-biom-format-2.1.7+dfsg'
dh_missing -O--buildsystem=pybuild
dh_dwz -O--buildsystem=pybuild
install -d debian/python-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -q -mdebian/python-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python-biom-format.debug -- debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.arm-linux-gnueabihf.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.arm-linux-gnueabihf.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python-biom-format.debug
install -d debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -q -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -O--buildsystem=pybuild
install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/45
objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.arm-linux-gnueabihf.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/45/10eaa5cee804f97fb4b35e0af9eac5a70fdcbc.debug
chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/45/10eaa5cee804f97fb4b35e0af9eac5a70fdcbc.debug
chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/45/10eaa5cee804f97fb4b35e0af9eac5a70fdcbc.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/45/10eaa5cee804f97fb4b35e0af9eac5a70fdcbc.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.arm-linux-gnueabihf.so
install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/be
objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.arm-linux-gnueabihf.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/be/9a4b527303ddb860a9add6d547922137483ee2.debug
chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/be/9a4b527303ddb860a9add6d547922137483ee2.debug
chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/be/9a4b527303ddb860a9add6d547922137483ee2.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/be/9a4b527303ddb860a9add6d547922137483ee2.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.arm-linux-gnueabihf.so
install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/1c
objcopy --only-keep-debug --compress-debug-sections debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.arm-linux-gnueabihf.so debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/1c/7076f9716e90671d39295d8d01c2c2ae0f8c11.debug
chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/1c/7076f9716e90671d39295d8d01c2c2ae0f8c11.debug
chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/1c/7076f9716e90671d39295d8d01c2c2ae0f8c11.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.build-id/1c/7076f9716e90671d39295d8d01c2c2ae0f8c11.debug debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.arm-linux-gnueabihf.so
install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python-biom-format/usr/lib/debug
install -d debian/.debhelper/python-biom-format/dbgsym-root/usr/share/doc
ln -s python-biom-format debian/.debhelper/python-biom-format/dbgsym-root/usr/share/doc/python-biom-format-dbgsym
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/b10deb509b58d6046c9f41b193c2fe048ece36.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/b10deb509b58d6046c9f41b193c2fe048ece36.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/b10deb509b58d6046c9f41b193c2fe048ece36.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/b10deb509b58d6046c9f41b193c2fe048ece36.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d5
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d5/ac54c83cbddd691448f42810d3b62e365dde62.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d5/ac54c83cbddd691448f42810d3b62e365dde62.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d5/ac54c83cbddd691448f42810d3b62e365dde62.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d5/ac54c83cbddd691448f42810d3b62e365dde62.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/95
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/95/f657e3a0d988b2f642a8bc8439ac3f2dd03a68.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/95/f657e3a0d988b2f642a8bc8439ac3f2dd03a68.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/95/f657e3a0d988b2f642a8bc8439ac3f2dd03a68.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/95/f657e3a0d988b2f642a8bc8439ac3f2dd03a68.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -O--buildsystem=pybuild
rm -f debian/python-biom-format/DEBIAN/shlibs
rm -f debian/python3-biom-format/DEBIAN/shlibs
rm -f debian/python-biom-format-doc/DEBIAN/shlibs
rm -f debian/biom-format-tools/DEBIAN/shlibs
dh_shlibdeps -O--buildsystem=pybuild
install -d debian/python-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python-biom-format.substvars debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_subsample.arm-linux-gnueabihf.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_transform.arm-linux-gnueabihf.so debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_filter.arm-linux-gnueabihf.so
install -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
dh_installdeb -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python-biom-format/DEBIAN/postinst
cat debian/python-biom-format.postinst.debhelper >> debian/python-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python-biom-format/DEBIAN/postinst
chown 0:0 -- debian/python-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python-biom-format/DEBIAN/prerm
cat debian/python-biom-format.prerm.debhelper >> debian/python-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python-biom-format/DEBIAN/prerm
chown 0:0 -- debian/python-biom-format/DEBIAN/prerm
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
chown 0:0 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
chown 0:0 -- debian/python3-biom-format/DEBIAN/prerm
install -d debian/python-biom-format-doc/DEBIAN
install -d debian/biom-format-tools/DEBIAN
dh_gencontrol -O--buildsystem=pybuild
echo misc:Depends= >> debian/python-biom-format-doc.substvars
echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars
dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -Pdebian/python-biom-format-doc -UMulti-Arch
echo misc:Depends= >> debian/python-biom-format.substvars
echo misc:Pre-Depends= >> debian/python-biom-format.substvars
install -d debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython-biom-format -ldebian/changelog -Tdebian/python-biom-format.substvars -Pdebian/.debhelper/python-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python-biom-format-dbgsym "-DDepends=python-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python-biom-format" "-DBuild-Ids=1c7076f9716e90671d39295d8d01c2c2ae0f8c11 4510eaa5cee804f97fb4b35e0af9eac5a70fdcbc be9a4b527303ddb860a9add6d547922137483ee2" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined
chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control
chown 0:0 -- debian/python-biom-format-doc/DEBIAN/control
echo misc:Depends= >> debian/biom-format-tools.substvars
echo misc:Pre-Depends= >> debian/biom-format-tools.substvars
dpkg-gencontrol -pbiom-format-tools -ldebian/changelog -Tdebian/biom-format-tools.substvars -Pdebian/biom-format-tools -UMulti-Arch
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython-biom-format -ldebian/changelog -Tdebian/python-biom-format.substvars -Pdebian/python-biom-format -UMulti-Arch
dpkg-gencontrol: warning: package biom-format-tools: substitution variable ${python:Depends} unused, but is defined
chmod 0644 -- debian/biom-format-tools/DEBIAN/control
chown 0:0 -- debian/biom-format-tools/DEBIAN/control
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-biom-format: substitution variable ${python:Versions} unused, but is defined
chmod 0644 -- debian/python-biom-format/DEBIAN/control
chown 0:0 -- debian/python-biom-format/DEBIAN/control
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=95f657e3a0d988b2f642a8bc8439ac3f2dd03a68 a7b10deb509b58d6046c9f41b193c2fe048ece36 d5ac54c83cbddd691448f42810d3b62e365dde62" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python:Depends} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format -UMulti-Arch
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python:Depends} unused, but is defined
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
chown 0:0 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -O--buildsystem=pybuild
cd debian/python-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python-biom-format/DEBIAN/md5sums
chown 0:0 -- debian/python-biom-format/DEBIAN/md5sums
chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums
chown 0:0 -- debian/python-biom-format-doc/DEBIAN/md5sums
cd debian/.debhelper/python-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/biom-format-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/python-biom-format/dbgsym-root/DEBIAN/md5sums
chmod 0644 -- debian/biom-format-tools/DEBIAN/md5sums
chown 0:0 -- debian/biom-format-tools/DEBIAN/md5sums
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
chown 0:0 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -O--buildsystem=pybuild
dpkg-deb --build debian/python-biom-format ..
dpkg-deb --build debian/python3-biom-format ..
dpkg-deb --build debian/python-biom-format-doc ..
dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.7+dfsg-2_all.deb'.
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.7+dfsg-2_armhf.deb'.
dpkg-deb: building package 'python-biom-format' in '../python-biom-format_2.1.7+dfsg-2_armhf.deb'.
dpkg-deb --build debian/biom-format-tools ..
dpkg-deb: building package 'biom-format-tools' in '../biom-format-tools_2.1.7+dfsg-2_armhf.deb'.
dpkg-deb --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb'.
dpkg-deb --build debian/.debhelper/python-biom-format/dbgsym-root ..
dpkg-deb: building package 'python-biom-format-dbgsym' in '../python-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../python-biom-format_2.1.7+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/9857 and its subdirectories
I: Current time: Mon Aug 10 13:34:52 -12 2020
I: pbuilder-time-stamp: 1597109692
Tue Aug 11 01:35:05 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net.
Tue Aug 11 01:35:05 UTC 2020 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net.
Tue Aug 11 01:43:28 UTC 2020 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net.
Tue Aug 11 01:43:30 UTC 2020 I: python-biom-format_2.1.7+dfsg-2_armhf.changes:
Format: 1.8
Date: Wed, 13 Feb 2019 22:13:47 +0100
Source: python-biom-format
Binary: biom-format-tools python-biom-format python-biom-format-dbgsym python-biom-format-doc python3-biom-format python3-biom-format-dbgsym
Architecture: armhf all
Version: 2.1.7+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
biom-format-tools - command-line tools for BIOM format
python-biom-format - Biological Observation Matrix (BIOM) format (Python 2)
python-biom-format-doc - documentation for BIOM format
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 922258
Changes:
python-biom-format (2.1.7+dfsg-2) unstable; urgency=medium
.
* Do not ship *.c and *.pyx cython input files in binary packages
* Fix "Could not import extension sphinx.ext.pngmath"
Closes: #922258
* Deactivate autopkgtest for the moment since it fails anyway
Checksums-Sha1:
041d099f02251d55e392b7aaa4e5b4ea70b4b7d0 14140 biom-format-tools_2.1.7+dfsg-2_armhf.deb
2d76fab1c77632442dc2b37a7fe14987a206e9a9 240988 python-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
40a8334aa0e16d1a6d9b76eaeebf26c1d33e3bf9 70368 python-biom-format-doc_2.1.7+dfsg-2_all.deb
f0949f51ed7949e5338b9150f06640c99d485942 9779 python-biom-format_2.1.7+dfsg-2_armhf.buildinfo
b15e4c43d5b82f20b8f74610a166aa1748356e07 133784 python-biom-format_2.1.7+dfsg-2_armhf.deb
c72516d321bf280830df2abdb70e6092304ed8d7 228712 python3-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
fdffd867ffb723bccbcc4b19d48c943b81392d25 126092 python3-biom-format_2.1.7+dfsg-2_armhf.deb
Checksums-Sha256:
ebe3ccdd3b42f02ca06f3f4777f4ab0a5a6d3c568afc578c101e3d76bd0a719a 14140 biom-format-tools_2.1.7+dfsg-2_armhf.deb
1cfcfdce7c8ce3df5316bcccdb4befa5b55667b7e5eeb72384e110653fc73a71 240988 python-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
68d2807e979acf62cb5183507d9f57af6b602f4ca42a36e0a6fd0d59d1120464 70368 python-biom-format-doc_2.1.7+dfsg-2_all.deb
72bda8cae222298f71b94489eeaad097360b8c3a5ba9d98ed90a11cb140a9a30 9779 python-biom-format_2.1.7+dfsg-2_armhf.buildinfo
59b39a0ee475db04aa3b24a88951d317eebbccc78660c65a90ab1df12f943c7b 133784 python-biom-format_2.1.7+dfsg-2_armhf.deb
72b0232aa5924130308b84a45aaa4fb6d1df56909e81d3f0a4814e8f61fb87dc 228712 python3-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
217729a4f2fa35efff5b86190cc9af987af4db36583dceeb24dd8ae27f2a07b1 126092 python3-biom-format_2.1.7+dfsg-2_armhf.deb
Files:
fc039d95507742f21a1df8b76b99feda 14140 misc optional biom-format-tools_2.1.7+dfsg-2_armhf.deb
2b1b2b2bd6543ccdf654d6efca34168f 240988 debug optional python-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
04f54eb4eeafa90f24f6d0c64a9abf51 70368 doc optional python-biom-format-doc_2.1.7+dfsg-2_all.deb
e8bf6f61bc788581f344f135516f10a1 9779 python optional python-biom-format_2.1.7+dfsg-2_armhf.buildinfo
abbcc881e5ed45ca08372d99076e4812 133784 python optional python-biom-format_2.1.7+dfsg-2_armhf.deb
3d8244173b64037e0875f5b3a6ec7e56 228712 debug optional python3-biom-format-dbgsym_2.1.7+dfsg-2_armhf.deb
b32792d0c2639bd1037daa2f9da10b8e 126092 python optional python3-biom-format_2.1.7+dfsg-2_armhf.deb
Tue Aug 11 01:43:31 UTC 2020 I: diffoscope 155 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/python-biom-format_2.1.7+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/python-biom-format_2.1.7+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/python-biom-format_2.1.7+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/b1/python-biom-format_2.1.7+dfsg-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.90hQB2ReB7/b2/python-biom-format_2.1.7+dfsg-2_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.233s)
0.233s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.034s)
0.034s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Tue Aug 11 01:43:33 UTC 2020 I: diffoscope 155 found no differences in the changes files, and a .buildinfo file also exists.
Tue Aug 11 01:43:33 UTC 2020 I: python-biom-format from buster built successfully and reproducibly on armhf.
Tue Aug 11 01:43:34 UTC 2020 I: Submitting .buildinfo files to external archives:
Tue Aug 11 01:43:34 UTC 2020 I: Submitting 12K b1/python-biom-format_2.1.7+dfsg-2_armhf.buildinfo.asc
Tue Aug 11 01:43:35 UTC 2020 I: Submitting 12K b2/python-biom-format_2.1.7+dfsg-2_armhf.buildinfo.asc
Tue Aug 11 01:43:36 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Aug 11 01:43:36 UTC 2020 I: Done submitting .buildinfo files.
Tue Aug 11 01:43:36 UTC 2020 I: Removing signed python-biom-format_2.1.7+dfsg-2_armhf.buildinfo.asc files:
removed './b1/python-biom-format_2.1.7+dfsg-2_armhf.buildinfo.asc'
removed './b2/python-biom-format_2.1.7+dfsg-2_armhf.buildinfo.asc'