Wed Oct 7 03:07:09 UTC 2020 I: starting to build r-cran-glmmtmb/buster/armhf on jenkins on '2020-10-07 03:07'
Wed Oct 7 03:07:09 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_50/4532/console.log
Wed Oct 7 03:07:09 UTC 2020 I: Downloading source for buster/r-cran-glmmtmb=0.2.3-1
--2020-10-07 03:07:09-- http://deb.debian.org/debian/pool/main/r/r-cran-glmmtmb/r-cran-glmmtmb_0.2.3-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2204 (2.2K)
Saving to: ‘r-cran-glmmtmb_0.2.3-1.dsc’
0K .. 100% 112M=0s
2020-10-07 03:07:09 (112 MB/s) - ‘r-cran-glmmtmb_0.2.3-1.dsc’ saved [2204/2204]
Wed Oct 7 03:07:09 UTC 2020 I: r-cran-glmmtmb_0.2.3-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb
Architecture: any
Version: 0.2.3-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://cran.r-project.org/package=glmmTMB
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-pscl, r-cran-testthat
Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
Package-List:
r-cran-glmmtmb deb gnu-r optional arch=any
Checksums-Sha1:
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907ad1fa14455baf966cabcee2835ac1d3350e20 13008 r-cran-glmmtmb_0.2.3-1.debian.tar.xz
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af2bee6e375360d0241b49f446ade459f982ce265f55445e0347fba82b8aea78 13008 r-cran-glmmtmb_0.2.3-1.debian.tar.xz
Files:
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574abc9236cb99ae2942132c2d49300f 13008 r-cran-glmmtmb_0.2.3-1.debian.tar.xz
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Wed Oct 7 03:07:09 UTC 2020 I: Checking whether the package is not for us
Wed Oct 7 03:07:09 UTC 2020 I: Starting 1st build on remote node jtx1c-armhf-rb.debian.net.
Wed Oct 7 03:07:09 UTC 2020 I: Preparing to do remote build '1' on jtx1c-armhf-rb.debian.net.
Wed Oct 7 03:18:06 UTC 2020 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Oct 6 15:07:16 -12 2020
I: pbuilder-time-stamp: 1602040036
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-cran-glmmtmb_0.2.3-1.dsc]
I: copying [./r-cran-glmmtmb_0.2.3.orig.tar.gz]
I: copying [./r-cran-glmmtmb_0.2.3-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 13 19:40:49 2019 -12
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-glmmtmb_0.2.3-1.dsc
dpkg-source: info: extracting r-cran-glmmtmb in r-cran-glmmtmb-0.2.3
dpkg-source: info: unpacking r-cran-glmmtmb_0.2.3.orig.tar.gz
dpkg-source: info: unpacking r-cran-glmmtmb_0.2.3-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/336/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='d4a09dec3ca846789fcd42d1d4b75acd'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='336'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/pbuilderrc_iLkI --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/b1 --logfile b1/build.log r-cran-glmmtmb_0.2.3-1.dsc'
SUDO_GID='111'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux jtx1c 4.19.0-11-arm64 #1 SMP Debian 4.19.146-1 (2020-09-17) aarch64 GNU/Linux
I: ls -l /bin
total 3328
-rwxr-xr-x 1 root root 767656 Apr 17 2019 bash
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2
-rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
-rwxr-xr-x 1 root root 22432 Feb 28 2019 cat
-rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp
-rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod
-rwxr-xr-x 1 root root 42972 Feb 28 2019 chown
-rwxr-xr-x 1 root root 88376 Feb 28 2019 cp
-rwxr-xr-x 1 root root 75516 Jan 17 2019 dash
-rwxr-xr-x 1 root root 71648 Feb 28 2019 date
-rwxr-xr-x 1 root root 51212 Feb 28 2019 dd
-rwxr-xr-x 1 root root 55672 Feb 28 2019 df
-rwxr-xr-x 1 root root 88444 Feb 28 2019 dir
-rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg
lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
-rwxr-xr-x 1 root root 22364 Feb 28 2019 echo
-rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
-rwxr-xr-x 1 root root 18260 Feb 28 2019 false
-rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
-rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt
-rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount
-rwxr-xr-x 1 root root 124508 Jan 7 2019 grep
-rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
-rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
-rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip
-rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname
-rwxr-xr-x 1 root root 43044 Feb 28 2019 ln
-rwxr-xr-x 1 root root 34932 Jul 26 2018 login
-rwxr-xr-x 1 root root 88444 Feb 28 2019 ls
-rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk
-rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir
-rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod
-rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp
-rwxr-xr-x 1 root root 26024 Jan 9 2019 more
-rwsr-xr-x 1 root root 34268 Jan 9 2019 mount
-rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint
-rwxr-xr-x 1 root root 84284 Feb 28 2019 mv
lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd
lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
-rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink
-rwxr-xr-x 1 root root 42968 Feb 28 2019 rm
-rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir
-rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Sep 20 20:25 sh -> dash
-rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep
-rwxr-xr-x 1 root root 51124 Feb 28 2019 stty
-rwsr-xr-x 1 root root 42472 Jan 9 2019 su
-rwxr-xr-x 1 root root 22392 Feb 28 2019 sync
-rwxr-xr-x 1 root root 283324 Apr 23 2019 tar
-rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile
-rwxr-xr-x 1 root root 63464 Feb 28 2019 touch
-rwxr-xr-x 1 root root 18260 Feb 28 2019 true
-rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server
-rwsr-xr-x 1 root root 21976 Jan 9 2019 umount
-rwxr-xr-x 1 root root 22380 Feb 28 2019 uname
-rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
-rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir
-rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl
-rwxr-xr-x 1 root root 946 Jan 21 2019 which
lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
-rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
-rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
-rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
-rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
-rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
-rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
-rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
-rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
-rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
I: user script /srv/workspace/pbuilder/336/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 12~), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-r; however:
Package dh-r is not installed.
pbuilder-satisfydepends-dummy depends on r-base-dev; however:
Package r-base-dev is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-tmb; however:
Package r-cran-tmb is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-lme4 (>= 1.1-18.9000); however:
Package r-cran-lme4 is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-matrix; however:
Package r-cran-matrix is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-nlme; however:
Package r-cran-nlme is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-rcppeigen; however:
Package r-cran-rcppeigen is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libnlopt0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} r-cran-littler{a} r-cran-lme4{a} r-cran-mass{a} r-cran-matrix{a} r-cran-minqa{a} r-cran-nlme{a} r-cran-nloptr{a} r-cran-pkgkitten{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-tmb{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 144 newly installed, 0 to remove and 0 not upgraded.
Need to get 98.8 MB of archives. After unpacking 251 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf dctrl-tools armhf 2.24-3 [96.0 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 34 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 35 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 36 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 37 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 38 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 39 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Get: 40 http://deb.debian.org/debian buster/main armhf zip armhf 3.0-11+b1 [228 kB]
Get: 41 http://deb.debian.org/debian buster/main armhf unzip armhf 6.0-23+deb10u1 [158 kB]
Get: 42 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get: 43 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB]
Get: 44 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB]
Get: 45 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB]
Get: 46 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB]
Get: 47 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB]
Get: 48 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB]
Get: 49 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB]
Get: 50 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get: 51 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get: 52 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB]
Get: 53 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB]
Get: 54 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get: 55 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 56 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get: 57 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1+deb10u1 [294 kB]
Get: 58 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1+deb10u1 [698 kB]
Get: 59 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get: 60 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB]
Get: 61 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB]
Get: 62 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get: 63 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB]
Get: 64 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB]
Get: 65 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB]
Get: 66 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB]
Get: 67 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB]
Get: 68 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB]
Get: 69 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB]
Get: 70 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB]
Get: 71 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB]
Get: 72 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB]
Get: 73 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB]
Get: 74 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB]
Get: 75 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB]
Get: 76 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB]
Get: 77 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB]
Get: 78 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB]
Get: 79 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB]
Get: 80 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB]
Get: 81 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB]
Get: 82 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB]
Get: 83 http://deb.debian.org/debian buster/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get: 84 http://deb.debian.org/debian buster/main armhf libfribidi0 armhf 1.0.5-3.1+deb10u1 [61.7 kB]
Get: 85 http://deb.debian.org/debian buster/main armhf libthai-data all 0.1.28-2 [170 kB]
Get: 86 http://deb.debian.org/debian buster/main armhf libdatrie1 armhf 0.2.12-2 [35.8 kB]
Get: 87 http://deb.debian.org/debian buster/main armhf libthai0 armhf 0.1.28-2 [50.7 kB]
Get: 88 http://deb.debian.org/debian buster/main armhf libpango-1.0-0 armhf 1.42.4-8~deb10u1 [169 kB]
Get: 89 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB]
Get: 90 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB]
Get: 91 http://deb.debian.org/debian buster/main armhf libpangoft2-1.0-0 armhf 1.42.4-8~deb10u1 [62.7 kB]
Get: 92 http://deb.debian.org/debian buster/main armhf libpangocairo-1.0-0 armhf 1.42.4-8~deb10u1 [52.2 kB]
Get: 93 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB]
Get: 94 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB]
Get: 95 http://deb.debian.org/debian buster/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [897 kB]
Get: 96 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB]
Get: 97 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2 [229 kB]
Get: 98 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u1 [252 kB]
Get: 99 http://deb.debian.org/debian buster/main armhf libxft2 armhf 2.3.2-2 [50.1 kB]
Get: 100 http://deb.debian.org/debian buster/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB]
Get: 101 http://deb.debian.org/debian buster/main armhf libtk8.6 armhf 8.6.9-2 [678 kB]
Get: 102 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB]
Get: 103 http://deb.debian.org/debian buster/main armhf r-base-core armhf 3.5.2-1 [23.7 MB]
Get: 104 http://deb.debian.org/debian buster/main armhf libgfortran-8-dev armhf 8.3.0-6 [260 kB]
Get: 105 http://deb.debian.org/debian buster/main armhf gfortran-8 armhf 8.3.0-6 [7219 kB]
Get: 106 http://deb.debian.org/debian buster/main armhf gfortran armhf 4:8.3.0-1 [1424 B]
Get: 107 http://deb.debian.org/debian buster/main armhf libblas-dev armhf 3.8.0-2 [117 kB]
Get: 108 http://deb.debian.org/debian buster/main armhf liblapack-dev armhf 3.8.0-2 [1680 kB]
Get: 109 http://deb.debian.org/debian buster/main armhf libncurses-dev armhf 6.1+20181013-2+deb10u2 [295 kB]
Get: 110 http://deb.debian.org/debian buster/main armhf libncurses5-dev armhf 6.1+20181013-2+deb10u2 [948 B]
Get: 111 http://deb.debian.org/debian buster/main armhf libreadline-dev armhf 7.0-5 [121 kB]
Get: 112 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [182 kB]
Get: 113 http://deb.debian.org/debian buster/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get: 114 http://deb.debian.org/debian buster/main armhf libpcre16-3 armhf 2:8.39-12 [238 kB]
Get: 115 http://deb.debian.org/debian buster/main armhf libpcre32-3 armhf 2:8.39-12 [231 kB]
Get: 116 http://deb.debian.org/debian buster/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get: 117 http://deb.debian.org/debian buster/main armhf libpcre3-dev armhf 2:8.39-12 [585 kB]
Get: 118 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB]
Get: 119 http://deb.debian.org/debian buster/main armhf libpng-dev armhf 1.6.36-6 [286 kB]
Get: 120 http://deb.debian.org/debian buster/main armhf libbz2-dev armhf 1.0.6-9.2~deb10u1 [28.8 kB]
Get: 121 http://deb.debian.org/debian buster/main armhf liblzma-dev armhf 5.2.4-1 [204 kB]
Get: 122 http://deb.debian.org/debian buster/main armhf icu-devtools armhf 63.1-6+deb10u1 [168 kB]
Get: 123 http://deb.debian.org/debian buster/main armhf libicu-dev armhf 63.1-6+deb10u1 [8940 kB]
Get: 124 http://deb.debian.org/debian buster/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.3 kB]
Get: 125 http://deb.debian.org/debian buster/main armhf xauth armhf 1:1.0.10-1 [37.4 kB]
Get: 126 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB]
Get: 127 http://deb.debian.org/debian buster/main armhf r-base-dev all 3.5.2-1 [4480 B]
Get: 128 http://deb.debian.org/debian buster/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get: 129 http://deb.debian.org/debian buster/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get: 130 http://deb.debian.org/debian buster/main armhf dh-r all 20190121 [35.1 kB]
Get: 131 http://deb.debian.org/debian buster/main armhf libnlopt0 armhf 2.4.2+dfsg-8+b1 [135 kB]
Get: 132 http://deb.debian.org/debian buster/main armhf r-cran-littler armhf 0.3.6-1 [305 kB]
Get: 133 http://deb.debian.org/debian buster/main armhf littler all 0.3.6-1 [13.6 kB]
Get: 134 http://deb.debian.org/debian buster/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get: 135 http://deb.debian.org/debian buster/main armhf r-cran-matrix armhf 1.2-15-1 [3373 kB]
Get: 136 http://deb.debian.org/debian buster/main armhf r-cran-mass armhf 7.3-51.1-1 [1101 kB]
Get: 137 http://deb.debian.org/debian buster/main armhf r-cran-nlme armhf 3.1.137-1+b3 [2200 kB]
Get: 138 http://deb.debian.org/debian buster/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get: 139 http://deb.debian.org/debian buster/main armhf r-cran-rcpp armhf 1.0.0-1 [3360 kB]
Get: 140 http://deb.debian.org/debian buster/main armhf r-cran-minqa armhf 1.2.4-1+b4 [104 kB]
Get: 141 http://deb.debian.org/debian buster/main armhf r-cran-nloptr armhf 1.2.1-1 [279 kB]
Get: 142 http://deb.debian.org/debian buster/main armhf r-cran-rcppeigen armhf 0.3.3.5.0-1 [1336 kB]
Get: 143 http://deb.debian.org/debian buster/main armhf r-cran-lme4 armhf 1.1-20-3 [4914 kB]
Get: 144 http://deb.debian.org/debian buster/main armhf r-cran-tmb armhf 1.7.15-1 [833 kB]
Fetched 98.8 MB in 10s (9936 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:armhf.
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(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../000-libbsd0_0.9.1-2_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../001-bsdmainutils_11.1.2+b1_armhf.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../002-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../003-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../004-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.8.5-2_armhf.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../006-readline-common_7.0-5_all.deb ...
Unpacking readline-common (7.0-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic-mgc (1:5.35-4+deb10u1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../009-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ...
Selecting previously unselected package file.
Preparing to unpack .../010-file_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking file (1:5.35-4+deb10u1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../011-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package ucf.
Preparing to unpack .../012-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../013-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../014-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../015-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../016-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../019-libssl1.1_1.1.1d-0+deb10u3_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-0+deb10u3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../020-openssl_1.1.1d-0+deb10u3_armhf.deb ...
Unpacking openssl (1.1.1d-0+deb10u3) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../021-ca-certificates_20190110_all.deb ...
Unpacking ca-certificates (20190110) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../022-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../023-libtool_2.4.6-9_all.deb ...
Unpacking libtool (2.4.6-9) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../024-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../025-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../027-dh-strip-nondeterminism_1.1.2-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../028-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../029-dwz_0.12-3_armhf.deb ...
Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../030-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../031-libicu63_63.1-6+deb10u1_armhf.deb ...
Unpacking libicu63:armhf (63.1-6+deb10u1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../032-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../033-libcroco3_0.6.12-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-3) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../034-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ...
Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../035-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../036-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../037-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
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Unpacking debhelper (12.1.1) ...
Selecting previously unselected package zip.
Preparing to unpack .../039-zip_3.0-11+b1_armhf.deb ...
Unpacking zip (3.0-11+b1) ...
Selecting previously unselected package unzip.
Preparing to unpack .../040-unzip_6.0-23+deb10u1_armhf.deb ...
Unpacking unzip (6.0-23+deb10u1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../041-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../042-libpaper-utils_1.1.28_armhf.deb ...
Unpacking libpaper-utils (1.1.28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../043-xdg-utils_1.1.3-1+deb10u1_all.deb ...
Unpacking xdg-utils (1.1.3-1+deb10u1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../044-libgfortran5_8.3.0-6_armhf.deb ...
Unpacking libgfortran5:armhf (8.3.0-6) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../045-libblas3_3.8.0-2_armhf.deb ...
Unpacking libblas3:armhf (3.8.0-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../046-libexpat1_2.2.6-2+deb10u1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../047-libpng16-16_1.6.36-6_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.36-6) ...
Selecting previously unselected package libfreetype6:armhf.
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fakeroot is already the newest version (1.23-1).
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I: Building the package
I: Running cd /build/r-cran-glmmtmb-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 0.2.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Dylan Aïssi <daissi@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
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dh_clean -O--buildsystem=R
debian/rules build
make: 'build' is up to date.
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dh binary --buildsystem R
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dh_testroot -O--buildsystem=R
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dh_auto_install -O--buildsystem=R
I: R packages needed for DEP8: testthat, pscl
I: R Package: glmmTMB Version: 0.2.3
I: Building using R version 3.5.2-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Mon, 14 Jan 2019 08:16:56 +0100
mkdir -p /build/r-cran-glmmtmb-0.2.3/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /build/r-cran-glmmtmb-0.2.3/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 14 Jan 2019 08:16:56 +0100'"
* installing *source* package 'glmmTMB' ...
** package 'glmmTMB' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/build/r-cran-glmmtmb-0.2.3/src'
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/TMB/include" -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/8/vector:69,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:15,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:54,
from glmmTMB.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<double>, int>}; _Tp = Eigen::Triplet<CppAD::AD<double>, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<double>, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<double>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/build/r-cran-glmmtmb-0.2.3/src'
make[1]: Entering directory '/build/r-cran-glmmtmb-0.2.3/src'
make[1]: Leaving directory '/build/r-cran-glmmtmb-0.2.3/src'
installing to /build/r-cran-glmmtmb-0.2.3/debian/r-cran-glmmtmb/usr/lib/R/site-library/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-pscl for Recommends:pscl
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car
I: Using r-cran-emmeans for Suggests:emmeans
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
I: Using r-cran-tmb for Imports:TMB (>= 1.7.13)
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
dh_installdocs -O--buildsystem=R
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dh_installsystemduser -O--buildsystem=R
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dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_0.2.3-1_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_0.2.3-1_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../r-cran-glmmtmb_0.2.3-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/336 and its subdirectories
I: Current time: Tue Oct 6 15:17:43 -12 2020
I: pbuilder-time-stamp: 1602040663
Wed Oct 7 03:18:08 UTC 2020 I: 1st build successful. Starting 2nd build on remote node jtk1a-armhf-rb.debian.net.
Wed Oct 7 03:18:08 UTC 2020 I: Preparing to do remote build '2' on jtk1a-armhf-rb.debian.net.
Wed Oct 7 03:50:43 UTC 2020 I: Deleting $TMPDIR on jtk1a-armhf-rb.debian.net.
Wed Oct 7 03:50:45 UTC 2020 I: r-cran-glmmtmb_0.2.3-1_armhf.changes:
Format: 1.8
Date: Mon, 14 Jan 2019 08:16:56 +0100
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 0.2.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
r-cran-glmmtmb (0.2.3-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
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2e8e2e177b3a9fa4840c30b290b03725 10775728 debug optional r-cran-glmmtmb-dbgsym_0.2.3-1_armhf.deb
5851fab5978b53670a26e647950ee154 8106 gnu-r optional r-cran-glmmtmb_0.2.3-1_armhf.buildinfo
17c3b5a060c4d300096b981f13a29480 2320528 gnu-r optional r-cran-glmmtmb_0.2.3-1_armhf.deb
Wed Oct 7 03:50:46 UTC 2020 I: diffoscope 160 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/r-cran-glmmtmb_0.2.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/r-cran-glmmtmb_0.2.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/r-cran-glmmtmb_0.2.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/b1/r-cran-glmmtmb_0.2.3-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.LfTQpxNvkL/b2/r-cran-glmmtmb_0.2.3-1_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.302s)
0.302s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.135s)
0.135s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Wed Oct 7 03:50:48 UTC 2020 I: diffoscope 160 found no differences in the changes files, and a .buildinfo file also exists.
Wed Oct 7 03:50:48 UTC 2020 I: r-cran-glmmtmb from buster built successfully and reproducibly on armhf.
Wed Oct 7 03:50:49 UTC 2020 I: Submitting .buildinfo files to external archives:
Wed Oct 7 03:50:49 UTC 2020 I: Submitting 12K b1/r-cran-glmmtmb_0.2.3-1_armhf.buildinfo.asc
Wed Oct 7 03:50:51 UTC 2020 I: Submitting 12K b2/r-cran-glmmtmb_0.2.3-1_armhf.buildinfo.asc
Wed Oct 7 03:50:52 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Oct 7 03:50:52 UTC 2020 I: Done submitting .buildinfo files.
Wed Oct 7 03:50:52 UTC 2020 I: Removing signed r-cran-glmmtmb_0.2.3-1_armhf.buildinfo.asc files:
removed './b1/r-cran-glmmtmb_0.2.3-1_armhf.buildinfo.asc'
removed './b2/r-cran-glmmtmb_0.2.3-1_armhf.buildinfo.asc'