Tue Jul 28 23:59:11 UTC 2020 I: starting to build yaha/buster/armhf on jenkins on '2020-07-28 23:58'
Tue Jul 28 23:59:11 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_7/5587/console.log
Tue Jul 28 23:59:11 UTC 2020 I: Downloading source for buster/yaha=0.1.83-1
--2020-07-28 23:59:11-- http://deb.debian.org/debian/pool/main/y/yaha/yaha_0.1.83-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1912 (1.9K)
Saving to: ‘yaha_0.1.83-1.dsc’
0K . 100% 179M=0s
2020-07-28 23:59:11 (179 MB/s) - ‘yaha_0.1.83-1.dsc’ saved [1912/1912]
Tue Jul 28 23:59:11 UTC 2020 I: yaha_0.1.83-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: yaha
Binary: yaha
Architecture: any
Version: 0.1.83-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://github.com/GregoryFaust/yaha
Standards-Version: 4.1.5
Vcs-Browser: https://salsa.debian.org/med-team/yaha
Vcs-Git: https://salsa.debian.org/med-team/yaha.git
Build-Depends: debhelper (>= 11)
Package-List:
yaha deb science optional arch=any
Checksums-Sha1:
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Files:
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7049559ecdd3a2df05ad0f2b9a243fdb 4316 yaha_0.1.83-1.debian.tar.xz
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Tue Jul 28 23:59:11 UTC 2020 I: Checking whether the package is not for us
Tue Jul 28 23:59:11 UTC 2020 I: Starting 1st build on remote node ff4a-armhf-rb.debian.net.
Tue Jul 28 23:59:11 UTC 2020 I: Preparing to do remote build '1' on ff4a-armhf-rb.debian.net.
Wed Jul 29 00:00:56 UTC 2020 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Jul 28 11:59:41 -12 2020
I: pbuilder-time-stamp: 1595980781
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [yaha_0.1.83-1.dsc]
I: copying [./yaha_0.1.83.orig.tar.gz]
I: copying [./yaha_0.1.83-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jul 18 03:52:37 2018 -12
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./yaha_0.1.83-1.dsc
dpkg-source: info: extracting yaha in yaha-0.1.83
dpkg-source: info: unpacking yaha_0.1.83.orig.tar.gz
dpkg-source: info: unpacking yaha_0.1.83-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/27077/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3'
DISTRIBUTION=''
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='96ab537c5e11446f844cbd4b2086c9f6'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='27077'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/pbuilderrc_aY5u --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/b1 --logfile b1/build.log yaha_0.1.83-1.dsc'
SUDO_GID='111'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:8000/'
I: uname -a
Linux ff4a 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux
I: ls -l /bin
total 3328
-rwxr-xr-x 1 root root 767656 Apr 17 2019 bash
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep
-rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2
-rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore
-rwxr-xr-x 1 root root 22432 Feb 28 2019 cat
-rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp
-rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod
-rwxr-xr-x 1 root root 42972 Feb 28 2019 chown
-rwxr-xr-x 1 root root 88376 Feb 28 2019 cp
-rwxr-xr-x 1 root root 75516 Jan 17 2019 dash
-rwxr-xr-x 1 root root 71648 Feb 28 2019 date
-rwxr-xr-x 1 root root 51212 Feb 28 2019 dd
-rwxr-xr-x 1 root root 55672 Feb 28 2019 df
-rwxr-xr-x 1 root root 88444 Feb 28 2019 dir
-rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg
lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname
-rwxr-xr-x 1 root root 22364 Feb 28 2019 echo
-rwxr-xr-x 1 root root 28 Jan 7 2019 egrep
-rwxr-xr-x 1 root root 18260 Feb 28 2019 false
-rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep
-rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt
-rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount
-rwxr-xr-x 1 root root 124508 Jan 7 2019 grep
-rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip
-rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe
-rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip
-rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname
-rwxr-xr-x 1 root root 43044 Feb 28 2019 ln
-rwxr-xr-x 1 root root 34932 Jul 26 2018 login
-rwxr-xr-x 1 root root 88444 Feb 28 2019 ls
-rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk
-rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir
-rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod
-rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp
-rwxr-xr-x 1 root root 26024 Jan 9 2019 more
-rwsr-xr-x 1 root root 34268 Jan 9 2019 mount
-rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint
-rwxr-xr-x 1 root root 84284 Feb 28 2019 mv
lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd
lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash
-rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink
-rwxr-xr-x 1 root root 42968 Feb 28 2019 rm
-rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir
-rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts
-rwxr-xr-x 1 root root 76012 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 25 20:27 sh -> dash
-rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep
-rwxr-xr-x 1 root root 51124 Feb 28 2019 stty
-rwsr-xr-x 1 root root 42472 Jan 9 2019 su
-rwxr-xr-x 1 root root 22392 Feb 28 2019 sync
-rwxr-xr-x 1 root root 283324 Apr 23 2019 tar
-rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile
-rwxr-xr-x 1 root root 63464 Feb 28 2019 touch
-rwxr-xr-x 1 root root 18260 Feb 28 2019 true
-rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server
-rwsr-xr-x 1 root root 21976 Jan 9 2019 umount
-rwxr-xr-x 1 root root 22380 Feb 28 2019 uname
-rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress
-rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir
-rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl
-rwxr-xr-x 1 root root 946 Jan 21 2019 which
lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat
-rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp
-rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff
-rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep
-rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep
-rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce
-rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep
-rwxr-xr-x 1 root root 2205 Jan 5 2019 zless
-rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore
-rwxr-xr-x 1 root root 4552 Jan 5 2019 znew
I: user script /srv/workspace/pbuilder/27077/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB]
Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB]
Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB]
Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB]
Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB]
Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB]
Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB]
Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB]
Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB]
Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB]
Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB]
Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB]
Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB]
Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB]
Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB]
Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB]
Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB]
Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB]
Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB]
Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB]
Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB]
Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB]
Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB]
Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB]
Fetched 18.2 MB in 3s (6874 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:armhf.
(Reading database ...
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(Reading database ... 18932 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic-mgc (1:5.35-4+deb10u1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ...
Selecting previously unselected package file.
Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ...
Unpacking file (1:5.35-4+deb10u1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
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Unpacking autoconf (2.69-11) ...
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Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
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Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
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Preparing to unpack .../17-libtool_2.4.6-9_all.deb ...
Unpacking libtool (2.4.6-9) ...
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Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.12-3_armhf.deb ...
Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ...
Unpacking libicu63:armhf (63.1-6+deb10u1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-3) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ...
Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
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Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21) ...
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Unpacking debhelper (12.1.1) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libmagic-mgc (1:5.35-4+deb10u1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ...
No schema files found: doing nothing.
Setting up libmagic1:armhf (1:5.35-4+deb10u1) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.35-4+deb10u1) ...
Setting up libicu63:armhf (63.1-6+deb10u1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libbsd0:armhf (0.9.1-2) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up libtool (2.4.6-9) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.1.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Processing triggers for libc-bin (2.28-10) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/yaha-0.1.83/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package yaha
dpkg-buildpackage: info: source version 0.1.83-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Steffen Moeller <moeller@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j3 clean
make[1]: Entering directory '/build/yaha-0.1.83'
rm -Rf obj
rm -Rf bin
make[1]: Leaving directory '/build/yaha-0.1.83'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/yaha.substvars debian/files
rm -fr -- debian/yaha/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j3 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/yaha-0.1.83'
mkdir -p obj
mkdir -p bin
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Main.c -o obj/Main.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignArgs.c -o obj/AlignArgs.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignHelpers.c -o obj/AlignHelpers.o
src/Main.c: In function 'main':
src/Main.c:640:54: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'long int' [-Wformat=]
fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
~~^ ~~~~~~~~~~~~~~~~~~
%ld
src/Main.c:640:85: warning: format '%zd' expects argument of type 'signed size_t', but argument 4 has type 'long int' [-Wformat=]
fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
~~^ ~~~~~~~~~~~~~~~~~~
%ld
g++ -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignOutput.c -o obj/AlignOutput.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/BaseSeq.c -o obj/BaseSeq.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Compress.c -o obj/Compress.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/FileHelpers.c -o obj/FileHelpers.o
g++ -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/GraphPath.cpp -o obj/GraphPath.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Index.c -o obj/Index.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Query.c -o obj/Query.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/QueryMatch.c -o obj/QueryMatch.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/QueryState.c -o obj/QueryState.o
g++ -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/SW.cpp -o obj/SW.o
cc -g -O2 -ffile-prefix-map=/build/yaha-0.1.83=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Math.c -o obj/Math.o
src/SW.cpp:799:5: warning: redeclaration of 'template<unsigned char banded, unsigned char extension, unsigned char reverse, unsigned char XCutoff> int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)' may not have default arguments [-fpermissive]
int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL)
^~~~~~~~~~~~~~~~~~
g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -pthread -o bin/yaha obj/Main.o obj/AlignArgs.o obj/AlignHelpers.o obj/AlignExtFrag.o obj/AlignOutput.o obj/BaseSeq.o obj/Compress.o obj/FileHelpers.o obj/GraphPath.o obj/Index.o obj/Query.o obj/QueryMatch.o obj/QueryState.o obj/SW.o obj/Math.o
make[1]: Leaving directory '/build/yaha-0.1.83'
dh_auto_test
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
rm -f -- debian/yaha.substvars
rm -fr -- debian/.debhelper/generated/yaha/ debian/yaha/ debian/tmp/
dh_auto_install
install -d /build/yaha-0.1.83/debian/yaha
dh_install
install -d debian/yaha/usr/bin
cp --reflink=auto -a ./bin/yaha debian/yaha/usr/bin/
install -d debian/.debhelper/generated/yaha
dh_installdocs
install -d debian/yaha/usr/share/doc/yaha
install -p -m0644 debian/copyright debian/yaha/usr/share/doc/yaha/copyright
dh_installchangelogs
install -p -m0644 debian/changelog debian/yaha/usr/share/doc/yaha/changelog.Debian
dh_installman
install -d debian/yaha/usr/share/man/man1/
install -p -m0644 ./debian/yaha.1 debian/yaha/usr/share/man/man1/yaha.1
man -l --recode UTF-8 ./debian/yaha/usr/share/man/man1/yaha.1 > debian/yaha/usr/share/man/man1/yaha.1.dh-new
mv debian/yaha/usr/share/man/man1/yaha.1.dh-new debian/yaha/usr/share/man/man1/yaha.1
chmod 0644 -- debian/yaha/usr/share/man/man1/yaha.1
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
cd debian/yaha
chmod a-x usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
gzip -9nf usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
cd '/build/yaha-0.1.83'
dh_fixperms
find debian/yaha -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/yaha ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/yaha/usr/share/doc -type f -a -true -a ! -regex 'debian/yaha/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/yaha/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing
dh_strip
install -d debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/4f
objcopy --only-keep-debug --compress-debug-sections debian/yaha/usr/bin/yaha debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/4f/db34bccd54ce57e17493150d90eecd6364cb22.debug
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/4f/db34bccd54ce57e17493150d90eecd6364cb22.debug
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/4f/db34bccd54ce57e17493150d90eecd6364cb22.debug
strip --remove-section=.comment --remove-section=.note debian/yaha/usr/bin/yaha
objcopy --add-gnu-debuglink debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/4f/db34bccd54ce57e17493150d90eecd6364cb22.debug debian/yaha/usr/bin/yaha
install -d debian/.debhelper/yaha/dbgsym-root/usr/share/doc
ln -s yaha debian/.debhelper/yaha/dbgsym-root/usr/share/doc/yaha-dbgsym
dh_makeshlibs
rm -f debian/yaha/DEBIAN/shlibs
dh_shlibdeps
install -d debian/yaha/DEBIAN
dpkg-shlibdeps -Tdebian/yaha.substvars debian/yaha/usr/bin/yaha
dh_installdeb
dh_gencontrol
echo misc:Depends= >> debian/yaha.substvars
echo misc:Pre-Depends= >> debian/yaha.substvars
install -d debian/.debhelper/yaha/dbgsym-root/DEBIAN
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/.debhelper/yaha/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=yaha-dbgsym "-DDepends=yaha (= \${binary:Version})" "-DDescription=debug symbols for yaha" -DBuild-Ids=4fdb34bccd54ce57e17493150d90eecd6364cb22 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/yaha -UMulti-Arch
chmod 0644 -- debian/yaha/DEBIAN/control
chown 0:0 -- debian/yaha/DEBIAN/control
dh_md5sums
cd debian/yaha >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/yaha/DEBIAN/md5sums
chown 0:0 -- debian/yaha/DEBIAN/md5sums
cd debian/.debhelper/yaha/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --build debian/yaha ..
dpkg-deb --build debian/.debhelper/yaha/dbgsym-root ..
dpkg-deb: building package 'yaha' in '../yaha_0.1.83-1_armhf.deb'.
dpkg-deb: building package 'yaha-dbgsym' in '../yaha-dbgsym_0.1.83-1_armhf.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../yaha_0.1.83-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/27077 and its subdirectories
I: Current time: Tue Jul 28 12:00:52 -12 2020
I: pbuilder-time-stamp: 1595980852
Wed Jul 29 00:00:59 UTC 2020 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net.
Wed Jul 29 00:00:59 UTC 2020 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net.
Wed Jul 29 00:15:07 UTC 2020 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net.
Wed Jul 29 00:15:10 UTC 2020 I: yaha_0.1.83-1_armhf.changes:
Format: 1.8
Date: Wed, 11 Jul 2018 20:27:27 +0200
Source: yaha
Binary: yaha yaha-dbgsym
Architecture: armhf
Version: 0.1.83-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
yaha - find split-read mappings on single-end queries
Closes: 903602
Changes:
yaha (0.1.83-1) unstable; urgency=medium
.
* Initial release (Closes: #903602)
Checksums-Sha1:
3c9de0d89321059bc0d2d2d7fca86a59c0281b9c 169520 yaha-dbgsym_0.1.83-1_armhf.deb
8123bbde0b9a64e07331c39725aba5e5fc629e76 4460 yaha_0.1.83-1_armhf.buildinfo
f89404f83561e3b4d65585e6cd38f822e055ddba 35572 yaha_0.1.83-1_armhf.deb
Checksums-Sha256:
d5089dc64d8c5babf29b560444323eadae44843a495c5f06ebf1a6d937bd32c1 169520 yaha-dbgsym_0.1.83-1_armhf.deb
f4779a18d9e4e79d1f8141540cc716a2cd85f9b351052a77d85dd78e8afcfec7 4460 yaha_0.1.83-1_armhf.buildinfo
25d3f3b95f56bd1add84010e29a46c9bf8fbf856050ff1255f3b5dc66aa97741 35572 yaha_0.1.83-1_armhf.deb
Files:
b76f09af6f1b50475cef33d2ef0c5dee 169520 debug optional yaha-dbgsym_0.1.83-1_armhf.deb
5911fa7899cdcf55f2abbeb8f7f7add6 4460 science optional yaha_0.1.83-1_armhf.buildinfo
43b2a6292f413f7106fe410fd9b47625 35572 science optional yaha_0.1.83-1_armhf.deb
Wed Jul 29 00:15:11 UTC 2020 I: diffoscope 153 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/yaha_0.1.83-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/yaha_0.1.83-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/yaha_0.1.83-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/b1/yaha_0.1.83-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.vU28KpCUWD/b2/yaha_0.1.83-1_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.240s)
0.240s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.025s)
0.025s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Wed Jul 29 00:15:13 UTC 2020 I: diffoscope 153 found no differences in the changes files, and a .buildinfo file also exists.
Wed Jul 29 00:15:13 UTC 2020 I: yaha from buster built successfully and reproducibly on armhf.
Wed Jul 29 00:15:14 UTC 2020 I: Submitting .buildinfo files to external archives:
Wed Jul 29 00:15:14 UTC 2020 I: Submitting 8.0K b1/yaha_0.1.83-1_armhf.buildinfo.asc
Wed Jul 29 00:15:15 UTC 2020 I: Submitting 8.0K b2/yaha_0.1.83-1_armhf.buildinfo.asc
Wed Jul 29 00:15:16 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Jul 29 00:15:16 UTC 2020 I: Done submitting .buildinfo files.
Wed Jul 29 00:15:16 UTC 2020 I: Removing signed yaha_0.1.83-1_armhf.buildinfo.asc files:
removed './b1/yaha_0.1.83-1_armhf.buildinfo.asc'
removed './b2/yaha_0.1.83-1_armhf.buildinfo.asc'