Tue May 12 11:15:54 UTC 2020 I: starting to build berkeley-express/buster/i386 on jenkins on '2020-05-12 11:15' Tue May 12 11:15:54 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/8692/console.log Tue May 12 11:15:54 UTC 2020 I: Downloading source for buster/berkeley-express=1.5.2+dfsg-1 --2020-05-12 11:15:54-- http://deb.debian.org/debian/pool/main/b/berkeley-express/berkeley-express_1.5.2+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2426 (2.4K) Saving to: ‘berkeley-express_1.5.2+dfsg-1.dsc’ 0K .. 100% 90.7M=0s 2020-05-12 11:15:54 (90.7 MB/s) - ‘berkeley-express_1.5.2+dfsg-1.dsc’ saved [2426/2426] Tue May 12 11:15:54 UTC 2020 I: berkeley-express_1.5.2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: berkeley-express Binary: berkeley-express, berkeley-express-doc Architecture: any all Version: 1.5.2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: http://bio.math.berkeley.edu/eXpress/index.html Standards-Version: 4.1.3 Vcs-Browser: https://salsa.debian.org/med-team/berkeley-express Vcs-Git: https://salsa.debian.org/med-team/berkeley-express.git Build-Depends: debhelper (>= 11~), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el], cmake, libprotobuf-dev, protobuf-compiler Package-List: berkeley-express deb science optional arch=any berkeley-express-doc deb doc optional arch=all Checksums-Sha1: 796bffabda723fbb3ed0555918d5a0c25c1620cb 365892 berkeley-express_1.5.2+dfsg.orig.tar.xz e1e50aaaec94dbd22e4b0c65d38d8b8ff9276c5a 8904 berkeley-express_1.5.2+dfsg-1.debian.tar.xz Checksums-Sha256: 3bf3ace8b7e22e44417ec5c4e6ee9b95d7cf15ba3038cbe52f2dd71bf28df105 365892 berkeley-express_1.5.2+dfsg.orig.tar.xz f149a22d312dbca06ebb9d0466372da61a40142488eb4af778596ff4b5494c49 8904 berkeley-express_1.5.2+dfsg-1.debian.tar.xz Files: f46f67a4d8380852440c9d1ee0c9b7c6 365892 berkeley-express_1.5.2+dfsg.orig.tar.xz 58dab3505fc21116e7bd90f40bf13fac 8904 berkeley-express_1.5.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlrLDDMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH+ig/9HD6oTcE3EQ84ZdqSFBN2sm7eQvzpXPMu DtIVe+pcFnOLPtEF2SRSLMFWrhJsk/OoHIYQAKcZVlBF/r97iURIPOuXPeRGwSup SpJkB+5H/wjMzwjoYW15Ei7BPu94qBY7jUY/Wa7PklErGkof/nVY2CDN5tim9HT3 JHZPWw1b4Cytxtb6Ssic25EQ/MRqCdhmO7wlrNYSIEgBBP0XigdQgo7Lf63HKtQe pZUciuqblgko0BPpYgDVxYa7kIGzizd9YpI9/TS/Eb2Yt4I/pf9mcIfFYxu4kQTD prLl2vuXPP2sHBHOm4wzgoVdhTrFLMMVN2BuEO0esmORGjH9lZq4gxH3GUjxI5SJ ShOR6cxkDIyrqvtjZzNTn3Ii5VWGFcSOUS6MxhIWQyDaAUnILlMg3k0mZwsgIu0h fiwGA1slkA27/pb13LWuBrgc3/ZPjugh1dI3ISkqBuoyz0l3MCD/7uCCrehAbklL 38cEFFrrgrmKVlKpZnOHiraw75+goVTp6Dlocd0rD/dken5NuqhaX2uEK1pMHwwT sSmn4h1cg1LNh+el53mc5jIZAJ8oP5Lc5+Qbq9CIQQVSwgu8/NDM7NknXvTayAiT kF3c+u1D5FNnTgdMkFEHSRU+hll5g/h24vU0D2Ivu27iBLZ0klapnkuFRv+Evupl 1LY7tVYu6DA= =NoPf -----END PGP SIGNATURE----- Tue May 12 11:15:54 UTC 2020 I: Checking whether the package is not for us Tue May 12 11:15:54 UTC 2020 I: Starting 1st build on remote node profitbricks-build16-i386.debian.net. Tue May 12 11:15:54 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build16-i386.debian.net. Tue May 12 11:16:37 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 14 05:38:55 -12 2021 I: pbuilder-time-stamp: 1623692335 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [berkeley-express_1.5.2+dfsg-1.dsc] I: copying [./berkeley-express_1.5.2+dfsg.orig.tar.xz] I: copying [./berkeley-express_1.5.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 8 18:46:11 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./berkeley-express_1.5.2+dfsg-1.dsc dpkg-source: info: extracting berkeley-express in berkeley-express-1.5.2+dfsg dpkg-source: info: unpacking berkeley-express_1.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libboost-thread-dev, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-date-time-dev, libbamtools-dev, libboost-tools-dev, libgoogle-perftools-dev, cmake, libprotobuf-dev, protobuf-compiler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libbamtools-dev; however: Package libbamtools-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-tools-dev; however: Package libboost-tools-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-perftools-dev; however: Package libgoogle-perftools-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbamtools-dev{a} libbamtools2.5.1{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time-dev{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost-tools-dev{a} libboost1.67-dev{a} libboost1.67-tools-dev{a} libbsd0{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgoogle-perftools-dev{a} libgoogle-perftools4{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libprotobuf-dev{a} libprotobuf-lite17{a} libprotobuf17{a} libprotoc17{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtcmalloc-minimal4{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} protobuf-compiler{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 47.9 MB of archives. After unpacking 305 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libprocps7 i386 2:3.3.15-2 [62.7 kB] Get: 9 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 procps i386 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 14 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 15 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 17 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main i386 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libarchive13 i386 3.3.3-4+deb10u1 [351 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u2 [236 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 38 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4+deb10u1 [358 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libjsoncpp1 i386 1.7.4-3 [85.0 kB] Get: 43 http://deb.debian.org/debian buster/main i386 librhash0 i386 1.3.8-1 [135 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libuv1 i386 1.24.1-1 [116 kB] Get: 45 http://deb.debian.org/debian buster/main i386 cmake i386 3.13.4-1 [3747 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 47 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 50 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 52 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 55 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 56 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libbamtools2.5.1 i386 2.5.1+dfsg-3 [173 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libbamtools-dev i386 2.5.1+dfsg-3 [21.8 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13+deb10u1 [8388 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libboost-atomic1.67.0 i386 1.67.0-13+deb10u1 [226 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libboost-atomic1.67-dev i386 1.67.0-13+deb10u1 [225 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libboost-chrono1.67.0 i386 1.67.0-13+deb10u1 [235 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libboost-chrono1.67-dev i386 1.67.0-13+deb10u1 [238 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libboost-date-time1.67.0 i386 1.67.0-13+deb10u1 [239 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libboost-serialization1.67.0 i386 1.67.0-13+deb10u1 [325 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libboost-serialization1.67-dev i386 1.67.0-13+deb10u1 [367 kB] Get: 69 http://deb.debian.org/debian buster/main i386 libboost-date-time1.67-dev i386 1.67.0-13+deb10u1 [248 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libboost-date-time-dev i386 1.67.0.1 [3648 B] Get: 71 http://deb.debian.org/debian buster/main i386 libboost-filesystem1.67.0 i386 1.67.0-13+deb10u1 [265 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libboost-system1.67-dev i386 1.67.0-13+deb10u1 [232 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libboost-filesystem1.67-dev i386 1.67.0-13+deb10u1 [274 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libboost-filesystem-dev i386 1.67.0.1 [3684 B] Get: 75 http://deb.debian.org/debian buster/main i386 libboost-program-options1.67.0 i386 1.67.0-13+deb10u1 [365 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libboost-program-options1.67-dev i386 1.67.0-13+deb10u1 [395 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libboost-program-options-dev i386 1.67.0.1 [3660 B] Get: 78 http://deb.debian.org/debian buster/main i386 libboost-system-dev i386 1.67.0.1 [3788 B] Get: 79 http://deb.debian.org/debian buster/main i386 libboost-thread1.67.0 i386 1.67.0-13+deb10u1 [270 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libboost-thread1.67-dev i386 1.67.0-13+deb10u1 [273 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libboost-thread-dev i386 1.67.0.1 [3672 B] Get: 82 http://deb.debian.org/debian buster/main i386 libboost1.67-tools-dev i386 1.67.0-13+deb10u1 [1497 kB] Get: 83 http://deb.debian.org/debian buster/main i386 libboost-tools-dev i386 1.67.0.1 [3824 B] Get: 84 http://deb.debian.org/debian buster/main i386 libtcmalloc-minimal4 i386 2.7-1 [205 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libgoogle-perftools4 i386 2.7-1 [312 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libgoogle-perftools-dev i386 2.7-1 [574 kB] Get: 87 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libprotobuf17 i386 3.6.1.3-2 [895 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libprotobuf-lite17 i386 3.6.1.3-2 [183 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libprotobuf-dev i386 3.6.1.3-2 [1226 kB] Get: 91 http://deb.debian.org/debian buster/main i386 libprotoc17 i386 3.6.1.3-2 [714 kB] Get: 92 http://deb.debian.org/debian buster/main i386 protobuf-compiler i386 3.6.1.3-2 [65.2 kB] Fetched 47.9 MB in 1s (59.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Setting up libsasl2-2:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:i386 (1.3.8-1) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libboost-filesystem1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libssh2-1:i386 (1.8.0-2.1) ... Setting up libboost-atomic1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up cmake-data (3.13.4-1) ... Setting up libboost-system1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libprotobuf17:i386 (3.6.1.3-2) ... Setting up libboost-serialization1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libgoogle-perftools4:i386 (2.7-1) ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up libboost-date-time-dev:i386 (1.67.0.1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:i386 (7.64.0-4+deb10u1) ... Setting up libboost-filesystem-dev:i386 (1.67.0.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libboost-thread1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.13.4-1) ... 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I: Building the package I: Running cd /build/berkeley-express-1.5.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/berkeley-express-1.5.2+dfsg' dh_clean src/config.h make[1]: Leaving directory '/build/berkeley-express-1.5.2+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- thread -- system -- filesystem -- program_options -- date_time -- chrono -- atomic -- Found GPERFTOOLS_TCMALLOC: /usr/lib/i386-linux-gnu/libtcmalloc.so -- Found Protobuf: /usr/lib/i386-linux-gnu/libprotobuf.so;-lpthread (found version "3.6.1") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.2+dfsg -B/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.2+dfsg/src/targets.proto [ 11%] Running cpp protocol buffer compiler on /build/berkeley-express-1.5.2+dfsg/src/alignments.proto cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src -I /build/berkeley-express-1.5.2+dfsg/src /build/berkeley-express-1.5.2+dfsg/src/targets.proto cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src -I /build/berkeley-express-1.5.2+dfsg/src /build/berkeley-express-1.5.2+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.2+dfsg /build/berkeley-express-1.5.2+dfsg/src /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= Scanning dependencies of target express make[3]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o [ 22%] Building CXX object src/CMakeFiles/express.dir/fragments.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/mismatchmodel.cpp [ 27%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o [ 33%] Building CXX object src/CMakeFiles/express.dir/bundles.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/fragments.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/fragments.cpp [ 38%] Building CXX object src/CMakeFiles/express.dir/biascorrection.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/directiondetector.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/directiondetector.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/bundles.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/bundles.cpp [ 44%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o [ 50%] Building CXX object src/CMakeFiles/express.dir/lengthdistribution.cpp.o [ 55%] Building CXX object src/CMakeFiles/express.dir/main.cpp.o [ 61%] Building CXX object src/CMakeFiles/express.dir/markovmodel.cpp.o [ 66%] Building CXX object src/CMakeFiles/express.dir/mapparser.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/biascorrection.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/biascorrection.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/lengthdistribution.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/lengthdistribution.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/main.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/main.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/mapparser.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/mapparser.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/markovmodel.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/markovmodel.cpp cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/robertsfilter.cpp [ 72%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o [ 77%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/targets.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/targets.cpp [ 83%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/sequence.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/sequence.cpp [ 88%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/threadsafety.cpp.o -c /build/berkeley-express-1.5.2+dfsg/src/threadsafety.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/targets.pb.cc.o -c /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 94%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -o CMakeFiles/express.dir/alignments.pb.cc.o -c /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src/alignments.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/berkeley-express-1.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express -lboost_thread -lpthread -lboost_system -lboost_filesystem -lboost_program_options -lboost_date_time -lboost_chrono -lboost_atomic -lbamtools -lprotobuf -lpthread -lrt make[3]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/berkeley-express-1.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-1.5.2+dfsg -B/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' cd /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-1.5.2+dfsg /build/berkeley-express-1.5.2+dfsg/src /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'. make[3]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/berkeley-express-1.5.2+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/build/berkeley-express-1.5.2+dfsg/obj-i686-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/berkeley-express-1.5.2+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/build/berkeley-express-1.5.2+dfsg' dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against libboost_atomic.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/berkeley-express/usr/lib/debian-med/bin/express was not linked against librt.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'berkeley-express' in '../berkeley-express_1.5.2+dfsg-1_i386.deb'. dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.2+dfsg-1_all.deb'. dpkg-deb: building package 'berkeley-express-dbgsym' in '../berkeley-express-dbgsym_1.5.2+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../berkeley-express_1.5.2+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/52541 and its subdirectories I: Current time: Mon Jun 14 05:39:36 -12 2021 I: pbuilder-time-stamp: 1623692376 Tue May 12 11:16:38 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Tue May 12 11:16:38 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Tue May 12 11:23:22 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Tue May 12 11:23:23 UTC 2020 I: berkeley-express_1.5.2+dfsg-1_i386.changes: Format: 1.8 Date: Sun, 08 Apr 2018 18:07:07 +0200 Source: berkeley-express Binary: berkeley-express berkeley-express-dbgsym berkeley-express-doc Architecture: i386 all Version: 1.5.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: berkeley-express - Streaming quantification for high-throughput sequencing berkeley-express-doc - Documentation for RNA-Seq tool eXpress Changes: berkeley-express (1.5.2+dfsg-1) unstable; urgency=medium . * Team upload . [ Steffen Moeller ] * d/control: update stadards version to 4.1.3 (no changes required) * d/u/metadata: - added references to registries - yamllint cleanliness . [ Andreas Tille ] * New upstream version * d/watch: point to GitHub after upstream has added release tags * Point Vcs fields to salsa.debian.org (the URL is also normalized to the package name as per cme and general considerations) * debhelper 11 * express-doc.pdf is not in upstream source any more * Exclude binaries and other unneeded files like download archives of previous versions * provide html documentation * avoid privace breach JS in html doc Checksums-Sha1: 2635496871dcb717cc811e23a2322dcd3b39e9fc 5026280 berkeley-express-dbgsym_1.5.2+dfsg-1_i386.deb 25cf35cb19734c71f58622102e57202ff27aa877 546116 berkeley-express-doc_1.5.2+dfsg-1_all.deb a97880106db2de8352b55141f0fa7ff86a528807 7481 berkeley-express_1.5.2+dfsg-1_i386.buildinfo cd100dbe343959fc0361a614d478ea3e444df910 247548 berkeley-express_1.5.2+dfsg-1_i386.deb Checksums-Sha256: 84482268187ccc2c9bdb7b5953303786e791660b7d1400d4bbc6de67de923183 5026280 berkeley-express-dbgsym_1.5.2+dfsg-1_i386.deb 9261fe368f76451bc7438685a0317e38578e3294d340a85d48ca154a17ad33f5 546116 berkeley-express-doc_1.5.2+dfsg-1_all.deb 6f4dcebd43f4c6e7db76b2055335138e5547a67bd2797f121ed4868c44c7e4ac 7481 berkeley-express_1.5.2+dfsg-1_i386.buildinfo 400ad5d2843b185184fa0a7bd855f4067d1eab1f54aa2286305e5de62cb6a2fc 247548 berkeley-express_1.5.2+dfsg-1_i386.deb Files: b1b379b6d7a67117fb6c4c737aad42a2 5026280 debug optional berkeley-express-dbgsym_1.5.2+dfsg-1_i386.deb 638cf6c19562922a9b61d03d35198e03 546116 doc optional berkeley-express-doc_1.5.2+dfsg-1_all.deb f466b81e97cb8fcff591971b1dbacdec 7481 science optional berkeley-express_1.5.2+dfsg-1_i386.buildinfo d875b5c65d3a07af5e0e472fdeb722c2 247548 science optional berkeley-express_1.5.2+dfsg-1_i386.deb Tue May 12 11:23:24 UTC 2020 I: diffoscope 143 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Murg0hy0K9/berkeley-express_1.5.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Murg0hy0K9/berkeley-express_1.5.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Murg0hy0K9/berkeley-express_1.5.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Murg0hy0K9/b1/berkeley-express_1.5.2+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.Murg0hy0K9/b2/berkeley-express_1.5.2+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.047s) 1.047s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.447s) 0.447s 10 calls diffoscope.comparators.binary.FilesystemFile Tue May 12 11:23:27 UTC 2020 I: diffoscope 143 found no differences in the changes files, and a .buildinfo file also exists. Tue May 12 11:23:27 UTC 2020 I: berkeley-express from buster built successfully and reproducibly on i386. Tue May 12 11:23:29 UTC 2020 I: Submitting .buildinfo files to external archives: Tue May 12 11:23:29 UTC 2020 I: Submitting 12K b1/berkeley-express_1.5.2+dfsg-1_i386.buildinfo.asc Tue May 12 11:23:30 UTC 2020 I: Submitting 12K b2/berkeley-express_1.5.2+dfsg-1_i386.buildinfo.asc Tue May 12 11:23:31 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 12 11:23:31 UTC 2020 I: Done submitting .buildinfo files. Tue May 12 11:23:31 UTC 2020 I: Removing signed berkeley-express_1.5.2+dfsg-1_i386.buildinfo.asc files: removed './b1/berkeley-express_1.5.2+dfsg-1_i386.buildinfo.asc' removed './b2/berkeley-express_1.5.2+dfsg-1_i386.buildinfo.asc'