Fri Jun 21 19:54:07 UTC 2019 I: starting to build cbflib/buster/i386 on jenkins on '2019-06-21 19:53' Fri Jun 21 19:54:07 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/173/console.log Fri Jun 21 19:54:07 UTC 2019 I: Downloading source for buster/cbflib=0.9.5.18+dfsg1-1 --2019-06-21 19:54:07-- http://deb.debian.org/debian/pool/main/c/cbflib/cbflib_0.9.5.18+dfsg1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/c/cbflib/cbflib_0.9.5.18+dfsg1-1.dsc [following] --2019-06-21 19:54:07-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cbflib/cbflib_0.9.5.18+dfsg1-1.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2231 (2.2K) Saving to: ‘cbflib_0.9.5.18+dfsg1-1.dsc’ 0K .. 100% 138M=0s 2019-06-21 19:54:07 (138 MB/s) - ‘cbflib_0.9.5.18+dfsg1-1.dsc’ saved [2231/2231] Fri Jun 21 19:54:07 UTC 2019 I: cbflib_0.9.5.18+dfsg1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: cbflib Binary: libcbf-dev, libcbf1, cbflib-bin, cbflib-doc Architecture: any all Version: 0.9.5.18+dfsg1-1 Maintainer: Debian Science Maintainers Uploaders: Morten Kjeldgaard , Teemu Ikonen Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/science-team/cbflib Vcs-Git: https://salsa.debian.org/science-team/cbflib.git Build-Depends: debhelper (>= 11~), pkg-config, libhdf5-dev Package-List: cbflib-bin deb science optional arch=any cbflib-doc deb doc optional arch=all libcbf-dev deb libdevel optional arch=any libcbf1 deb libs optional arch=any Checksums-Sha1: 220839549650233865e05d286555a0f489c6cfdb 10946053 cbflib_0.9.5.18+dfsg1.orig.tar.gz e8ad17803235b02b20b54b46572c31bda92fe175 22448 cbflib_0.9.5.18+dfsg1-1.debian.tar.xz Checksums-Sha256: e8e7a9ccd33e4060bef5d89421499afe8f08da6238e35c4f1ac477f40ada9983 10946053 cbflib_0.9.5.18+dfsg1.orig.tar.gz 74e0160392106244b3c31e2d0b55ab98f3404e27db2e4f0e89789ed89a05ec48 22448 cbflib_0.9.5.18+dfsg1-1.debian.tar.xz Files: 477d16e2f336b139dbab94708aaf0cc7 10946053 cbflib_0.9.5.18+dfsg1.orig.tar.gz 27235b7033eb6d2ab94e6145357d786f 22448 cbflib_0.9.5.18+dfsg1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvKwQQOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHJzxAAj1yeXAyEo61UXUf+xreoQn8sNWCCmJ5LWKUD bQPBg2jua6FGP+hVvbopLnVxX0FMGm5nZfO4OR3JiaURlKUJP1l21Tz+uQsHMyBo IWPaLPbjf0/OwX982REdstxA/vXntd0rwYnA9XZnz7OJyokGhKDGn5bw+iVICqWL n36ih28XZq6k71ZT6NnsQR3wyyb9WJA5I7Q7VTCQU50IRXc0tlaATfejoHtfgSSg GIHNsYmj7C8+/wIPl3ltoQGr9Cov4g5QZnegxyKA9AplHCon3iI/WxjE4tAIDUlg KLez/h4tUJ2ziJHmjN1FW1ZiT8pb43wYFtFqm8Ko5/iVcb7vKFexx3EecRdVSomE QHfgA5O9ggxe3OUmCX4TvI7i0zSUs7BsiBJq54GcIBccQcbLtXVno7TYXccLMNhA 2spZRxxVS7588SrGNUd1hmulxN+blsIlQJL6gtdWOdyIetwrgUrR9L28GSvkpJgZ esJDBYh0/ltuxzweSOlf58yT9PaDwN0ZvgsXudgojNKJh6cNMJMHHEYThDHPlvhP IUIhjm9nw28jXdVJPuVFp0y6CjDYmfUcplJKoWXBDbgj8ICZ2sKNW68CmmBOuUWs YRNXbgToQE+Yd+pipl4cUhaRp28fD6TjhT0AuOVDQTCUsheopplrf8uUUOExFofp 4B3XGnw= =CLi1 -----END PGP SIGNATURE----- Fri Jun 21 19:54:07 UTC 2019 I: Checking whether the package is not for us Fri Jun 21 19:54:07 UTC 2019 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Fri Jun 21 19:54:07 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Fri Jun 21 20:08:03 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 07:54:22 -12 2019 I: pbuilder-time-stamp: 1561146862 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [cbflib_0.9.5.18+dfsg1-1.dsc] I: copying [./cbflib_0.9.5.18+dfsg1.orig.tar.gz] I: copying [./cbflib_0.9.5.18+dfsg1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 19 17:45:40 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cbflib_0.9.5.18+dfsg1-1.dsc dpkg-source: info: extracting cbflib in cbflib-0.9.5.18+dfsg1 dpkg-source: info: unpacking cbflib_0.9.5.18+dfsg1.orig.tar.gz dpkg-source: info: unpacking cbflib_0.9.5.18+dfsg1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0012-makefile-fix-Simplify-building-example-programs.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0015-Makefile-deb-Use-dynamic-linking-to-cbflib-in-progra.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), pkg-config, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 24.9 MB of archives. After unpacking 91.5 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 hdf5-helpers i386 1.10.4+repack-10 [35.2 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [155 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-dev i386 1.10.4+repack-10 [2738 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] Fetched 24.9 MB in 14s (1743 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. 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I: Building the package I: Running cd /build/cbflib-0.9.5.18+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.5.18+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Teemu Ikonen dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel make -j1 distclean make[1]: Entering directory '/build/cbflib-0.9.5.18+dfsg1' ./.undosymlinks make[1]: Leaving directory '/build/cbflib-0.9.5.18+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules build dh build --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel dh_auto_build -O--no-parallel make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/cbflib-0.9.5.18+dfsg1' *************************************************************** PLEASE READ README and doc/CBFlib_NOTICES.txt Before making the CBF library and example programs, check that the C compiler name and flags are correct: The current values are: gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX Before installing the CBF library and example programs, check that the install directory is correct: The current value : /usr To compile the CBF library and example programs type: make clean make all To compile the CBF library as a shared object library, type: make shared To compile the Java wrapper classes for CBF library, type: make javawrapper To run a set of tests type: make tests To run some java tests type: make javatests The tests assume that several data files are in the directories ./../CBFlib_0.9.5_Data_Files_Input and ./../CBFlib_0.9.5_Data_Files_Output Alternatively tests can be run comparing MD5 signatures only by make tests_sigs_only These signature only tests save space and download time by assuming that input data files and the output signatures are in the directories ./../CBFlib_0.9.5_Data_Files_Input and ./../CBFlib_0.9.5_Data_Files_Output_Sigs_Only These directory can be obtained from http://downloads.sf.net/cbflib//CBFlib_0.9.5_Data_Files_Input.tar.gz http://downloads.sf.net/cbflib//CBFlib_0.9.5_Data_Files_Output.tar.gz http://downloads.sf.net/cbflib//CBFlib_0.9.5_Data_Files_Output_Sigs_Only.tar.gz To clean up the directories type: make clean To install the library and binaries type: make install *************************************************************** make[1]: Leaving directory '/build/cbflib-0.9.5.18+dfsg1' dh_auto_test -O--no-parallel create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --no-parallel dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/build/cbflib-0.9.5.18\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/cbflib-0.9.5.18+dfsg1' (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > ./src/fcb_exit_binary.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > ./src/fcb_next_binary.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > ./src/fcb_open_cifin.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > ./src/fcb_packed.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > ./src/fcb_read_bits.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > ./src/fcb_read_image.f90 (cd ./m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > ./src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f lib/libcbf.a rm -f *.o gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I./include -I./src -I/usr/include/hdf5/serial -c ./src/cbf.c ./src/cbf_airy_disk.c ./src/cbf_alloc.c ./src/cbf_ascii.c ./src/cbf_binary.c ./src/cbf_byte_offset.c ./src/cbf_canonical.c ./src/cbf_codes.c ./src/cbf_compress.c ./src/cbf_context.c ./src/cbf_copy.c ./src/cbf_file.c ./src/cbf_getopt.c ./src/cbf_hdf5.c ./src/cbf_hdf5_filter.c ./src/cbf_lex.c ./src/cbf_minicbf_header.c ./src/cbf_nibble_offset.c ./src/cbf_packed.c ./src/cbf_predictor.c ./src/cbf_read_binary.c ./src/cbf_read_mime.c ./src/cbf_simple.c ./src/cbf_string.c ./src/cbf_stx.c ./src/cbf_tree.c ./src/cbf_uncompressed.c ./src/cbf_write.c ./src/cbf_write_binary.c ./src/cbf_ws.c ./src/cbff.c ./src/md5c.c ./src/img.c ./src/fgetln.c ./src/cbf.c: In function 'cbf_validate': ./src/cbf.c:7240:12: warning: variable 'dtest' set but not used [-Wunused-but-set-variable] double dtest; ^~~~~ ./src/cbf.c:7238:10: warning: variable 'ltest' set but not used [-Wunused-but-set-variable] long ltest; ^~~~~ ./src/cbf.c: In function 'cbf_mpint_leftshift_acc': ./src/cbf.c:8408:16: warning: variable 'sign' set but not used [-Wunused-but-set-variable] unsigned int sign; ^~~~ ./src/cbf_byte_offset.c: In function 'cbf_compress_byte_offset': ./src/cbf_byte_offset.c:284:29: warning: variable 'borrow' set but not used [-Wunused-but-set-variable] unsigned int count, borrow, element[4], prevelement[4], ^~~~~~ ./src/cbf_byte_offset.c: In function 'cbf_decompress_byte_offset_slow': ./src/cbf_byte_offset.c:1075:49: warning: variable 'carry' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint, carry; ^~~~~ ./src/cbf_byte_offset.c:1075:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint, carry; ^~~~~~~~~ ./src/cbf_canonical.c: In function 'cbf_compress_canonical': ./src/cbf_canonical.c:1821:24: warning: variable 'node' set but not used [-Wunused-but-set-variable] cbf_compress_node *node, *start; ^~~~ ./src/cbf_canonical.c:1815:89: warning: variable 'endcode' set but not used [-Wunused-but-set-variable] unsigned int count, i, iint, element[4], lastelement[4], bits, unsign, sign, limit, endcode; ^~~~~~~ ./src/cbf_canonical.c: In function 'cbf_decompress_canonical': ./src/cbf_canonical.c:2176:57: warning: variable 'count64' set but not used [-Wunused-but-set-variable] unsigned int bits, element[4], sign, unsign, limit, count64, count; ^~~~~~~ ./src/cbf_codes.c: In function 'cbf_tobase32k': ./src/cbf_codes.c:600:23: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned char tmp[3]; ^~~ ./src/cbf_codes.c: In function 'cbf_frombase32k': ./src/cbf_codes.c:1317:13: warning: variable 'mah' set but not used [-Wunused-but-set-variable] int mah =0; /*the number of bytes that should be cut from the end*/ ^~~ ./src/cbf_context.c: In function 'cbf_mkdir': ./src/cbf_context.c:525:23: warning: implicit declaration of function 'cbf_cistrcmp'; did you mean 'strcmp'? [-Wimplicit-function-declaration] if (!path || !cbf_cistrcmp(path,"") || !cbf_cistrcmp(path,"(NONE)")) return CBF_SUCCESS; ^~~~~~~~~~~~ strcmp ./src/cbf_context.c: In function 'cbf_mktmpfile': ./src/cbf_context.c:618:30: warning: unused variable 'temp_file' [-Wunused-variable] FILE * control_file, temp_file; ^~~~~~~~~ ./src/cbf_context.c: In function 'cbf_find_tmpdir': ./src/cbf_context.c:712:16: warning: unused variable 'result' [-Wunused-variable] FILE * result; ^~~~~~ ./src/cbf_copy.c: In function 'cbf_copy_value_with_roi': ./src/cbf_copy.c:976:32: warning: variable 'onemore' set but not used [-Wunused-but-set-variable] double onemore; ^~~~~~~ ./src/cbf_copy.c:972:37: warning: variable 'hiword' set but not used [-Wunused-but-set-variable] int loword, hiword; ^~~~~~ ./src/cbf_copy.c:972:29: warning: variable 'loword' set but not used [-Wunused-but-set-variable] int loword, hiword; ^~~~~~ ./src/cbf_copy.c:1867:49: warning: "/*" within comment [-Wcomment] /*if (valtemp < minval || valtemp > maxval) { ./src/cbf_hdf5.c: In function 'cbf_configParse_extractVector': ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4362:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4370:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4378:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_config_parse': ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4476:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Duplicate axis definition for minicbf axis '%s'\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4427:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4427:17: note: in definition of macro 'REQUIRE_TOKEN' fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4489:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Duplicate axis definition for Nexus axis '%s'\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4427:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4427:17: note: in definition of macro 'REQUIRE_TOKEN' fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4514:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_h5handle_require_detector': ./src/cbf_hdf5.c:5977:26: warning: variable 'cur_name' set but not used [-Wunused-but-set-variable] const char * cur_name = NULL; ^~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_array_h5file2': ./src/cbf_hdf5.c:6756:72: warning: variable 'wuvaslong' set but not used [-Wunused-but-set-variable] int wsvasstr, wuvasstr, wsvasdbl, wuvasdbl, wsvaslong, wuvaslong; ^~~~~~~~~ ./src/cbf_hdf5.c:6756:61: warning: variable 'wsvaslong' set but not used [-Wunused-but-set-variable] int wsvasstr, wuvasstr, wsvasdbl, wuvasdbl, wsvaslong, wuvaslong; ^~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_nxdata': ./src/cbf_hdf5.c:8093:15: warning: variable 'dsetid' set but not used [-Wunused-but-set-variable] hid_t dsetid; ^~~~~~ ./src/cbf_hdf5.c:8049:22: warning: variable 'nxdetector' set but not used [-Wunused-but-set-variable] const char * nxdetector; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_nxdetectors2': ./src/cbf_hdf5.c:8840:29: warning: variable 'havedmn' set but not used [-Wunused-but-set-variable] int havedmn; ^~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_strcat': ./src/cbf_hdf5.c:9466:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode; ^~~~~~~~~ In file included from ./src/cbf_hdf5.c:258: ./src/cbf_hdf5.c: In function 'cbf_set_NX_parent_path': ./src/cbf_hdf5.c:10454:61: warning: pointer targets in passing argument 2 of 'cbf_row_number' differ in signedness [-Wpointer-sign] cbf_failnez(cbf_row_number(h5handle->scratch_tables,&rownum)); ^~~~~~~ ./include/cbf.h:893:42: note: in definition of macro 'cbf_failnez' #define cbf_failnez(f) { int err; err = (f); if (err) return err; } ^ ./include/cbf.h:1310:5: note: expected 'unsigned int *' but argument is of type 'int *' int cbf_row_number (cbf_handle handle, unsigned int *row); ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_set_NX_axis_path': ./src/cbf_hdf5.c:10607:61: warning: pointer targets in passing argument 2 of 'cbf_row_number' differ in signedness [-Wpointer-sign] cbf_failnez(cbf_row_number(h5handle->scratch_tables,&targetrow)); ^~~~~~~~~~ ./include/cbf.h:893:42: note: in definition of macro 'cbf_failnez' #define cbf_failnez(f) { int err; err = (f); if (err) return err; } ^ ./include/cbf.h:1310:5: note: expected 'unsigned int *' but argument is of type 'int *' int cbf_row_number (cbf_handle handle, unsigned int *row); ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_h5nxaxes': ./src/cbf_hdf5.c:11024:29: warning: unused variable 'maxsize' [-Wunused-variable] hsize_t maxsize[] = {H5S_UNLIMITED}; ^~~~~~~ ./src/cbf_hdf5.c:11022:29: warning: unused variable 'chunk' [-Wunused-variable] hsize_t chunk[] = {1}; ^~~~~ ./src/cbf_hdf5.c:11020:27: warning: unused variable 'mtype' [-Wunused-variable] hid_t mtype = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:11416:49: warning: passing argument 1 of 'cbf_free_text' from incompatible pointer type [-Wincompatible-pointer-types] if (axisendpointpath) cbf_free_text(&axisendpointpath,0); ^~~~~~~~~~~~~~~~~ In file included from ./src/cbf_hdf5.c:270: ./include/cbf_alloc.h:274:33: note: expected 'const char **' but argument is of type 'char **' int cbf_free_text (const char **old_block, size_t *old_nelem); ~~~~~~~~~~~~~^~~~~~~~~ ./src/cbf_hdf5.c:10820:21: warning: unused variable 'two' [-Wunused-variable] hsize_t two = 2; ^~~ ./src/cbf_hdf5.c:10818:21: warning: unused variable 'one' [-Wunused-variable] hsize_t one = 1; ^~~ ./src/cbf_hdf5.c:10798:20: warning: variable 'axisrangetot' set but not used [-Wunused-but-set-variable] char * axisrangetot = NULL; ^~~~~~~~~~~~ ./src/cbf_hdf5.c:10796:20: warning: variable 'axisrangeavg' set but not used [-Wunused-but-set-variable] char * axisrangeavg = NULL; ^~~~~~~~~~~~ ./src/cbf_hdf5.c:10790:26: warning: variable 'axisequipment' set but not used [-Wunused-but-set-variable] const char * axisequipment = NULL; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c:10778:26: warning: variable 'equipmentclass' set but not used [-Wunused-but-set-variable] const char * equipmentclass = NULL; ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10772:60: warning: unused variable 'dprop' [-Wunused-variable] hid_t dtype = CBF_H5FAIL, dspace = CBF_H5FAIL, dprop = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:10772:19: warning: unused variable 'dtype' [-Wunused-variable] hid_t dtype = CBF_H5FAIL, dspace = CBF_H5FAIL, dprop = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:10770:19: warning: unused variable 'nxaxisrangetotid' [-Wunused-variable] hid_t nxaxisrangetotid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10768:19: warning: unused variable 'nxaxisrangeavgid' [-Wunused-variable] hid_t nxaxisrangeavgid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10766:19: warning: unused variable 'nxaxisendpointid' [-Wunused-variable] hid_t nxaxisendpointid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10678:16: warning: variable 'zero' set but not used [-Wunused-but-set-variable] double zero[1]; ^~~~ ./src/cbf_hdf5.c: In function 'cbf_apply_h5vector_attribute': ./src/cbf_hdf5.c:11614:30: warning: unused variable 'adim' [-Wunused-variable] size_t ii, rank, adim; ^~~~ ./src/cbf_hdf5.c:11610:21: warning: unused variable 'attribsize' [-Wunused-variable] hsize_t attribsize = CBF_H5ERROR; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_find_h5text_dataset_slab': ./src/cbf_hdf5.c:12601:47: warning: unused variable 'ii' [-Wunused-variable] size_t text_size, old_size, new_size, ii; ^~ ./src/cbf_hdf5.c:12591:17: warning: variable 'maxdssize' set but not used [-Wunused-but-set-variable] hsize_t maxdssize[1]; ^~~~~~~~~ ./src/cbf_hdf5.c:12589:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[1]; ^~~~~~ ./src/cbf_hdf5.c:12585:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:12583:17: warning: variable 'curdim' set but not used [-Wunused-but-set-variable] hsize_t curdim[1]; ^~~~~~ ./src/cbf_hdf5.c:12581:17: warning: variable 'chunk' set but not used [-Wunused-but-set-variable] hsize_t chunk[1] = {1}; ^~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_h5text_dataset_slab': ./src/cbf_hdf5.c:12821:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[1]; ^~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5double_vector_dataset_slab': ./src/cbf_hdf5.c:13604:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[2]; ^~~~~~ ./src/cbf_hdf5.c:13602:16: warning: unused variable 'dsexists' [-Wunused-variable] htri_t dsexists; ^~~~~~~~ ./src/cbf_hdf5.c:13594:17: warning: unused variable 'count' [-Wunused-variable] hsize_t count[2] = {1,1}; ^~~~~ ./src/cbf_hdf5.c:13592:17: warning: unused variable 'stride' [-Wunused-variable] hsize_t stride[2] = {1,1}; ^~~~~~ ./src/cbf_hdf5.c:13588:13: warning: unused variable 'ndims' [-Wunused-variable] int ndims = 0; ^~~~~ ./src/cbf_hdf5.c:13584:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5double_dataset_slab': ./src/cbf_hdf5.c:13717:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:13701:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5long_dataset_slab': ./src/cbf_hdf5.c:13985:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:13969:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5ulong_dataset_slab': ./src/cbf_hdf5.c:14252:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:14236:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_h5category': ./src/cbf_hdf5.c:16253:34: warning: variable 'units' set but not used [-Wunused-but-set-variable] const char * units; ^~~~~ ./src/cbf_hdf5.c:16251:34: warning: variable 'mappedname' set but not used [-Wunused-but-set-variable] const char * mappedname; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__detector_op': ./src/cbf_hdf5.c:18775:61: warning: passing argument 2 of 'cbf_set_value' makes pointer from integer without a cast [-Wint-conversion] CBF_CALL(cbf_set_value(cbf,value[0])); ~~~~~^~~ ./src/cbf_hdf5.c:793:27: note: in definition of macro 'CBF_CALL' if (CBF_SUCCESS!=(error|=(exp))) { \ ^~~ In file included from ./src/cbf_hdf5.c:258: ./include/cbf.h:1330:51: note: expected 'const char *' but argument is of type 'char' int cbf_set_value (cbf_handle handle, const char *value); ~~~~~~~~~~~~^~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': ./src/cbf_hdf5.c:21729:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] cbf_node * node = NULL; ^~~~ ./src/cbf_hdf5.c:21982:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21982:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; ^~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21983:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21983:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; ^~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21984:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21984:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; ^~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21323:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] unsigned int data_row = ~0x0; ^~~~~~~~ ./src/cbf_hdf5.c:22049:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] cbf_node * diffrn_scan_axis = NULL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': ./src/cbf_hdf5.c:25706:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] const char * rotation_axis_path = NULL; ^~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': ./src/cbf_hdf5.c:25917:26: warning: unused variable 'equipment_component' [-Wunused-variable] const char * equipment_component = NULL; ^~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': ./src/cbf_hdf5.c:26247:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] cbf_node * axis_rotation_axis = NULL; ^~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_minicbf_h5file': ./src/cbf_hdf5.c:27294:44: warning: unused variable 'buf' [-Wunused-variable] char * buf = malloc(1+ H5Tget_size(currType)); ^~~ ./src/cbf_hdf5.c: In function 'cbf_object_visit': ./src/cbf_hdf5.c:29281:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] int binary_id, bits, sign, type, checked_digest, realarray = 0; ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c:29281:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] int binary_id, bits, sign, type, checked_digest, realarray = 0; ^~~~ At top level: ./src/cbf_hdf5.c:8968:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] static int cbf_require_nxdetectors(const cbf_handle handle, ^~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2': ./src/cbf_hdf5.c:6188:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] sprintf(buffer,"%06d",block); ^~~~ ./src/cbf_hdf5.c:6188:36: note: directive argument in the range [1, 2147483647] sprintf(buffer,"%06d",block); ^~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from ./include/cbf.h:253, from ./src/cbf_hdf5.c:258: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5text_dataset_slab': ./src/cbf_hdf5.c:13348:29: warning: 'anondataset' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_h5reportneg(H5Olink(anondataset,hid,datasetname,H5P_DEFAULT,H5P_DEFAULT), CBF_FORMAT, errorcode); ^~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_h5text_dataset_slab': ./src/cbf_hdf5.c:12959:47: warning: 'anondataset' may be used uninitialized in this function [-Wmaybe-uninitialized] if (anondataset >= 0) H5Dclose(anondataset); ^~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5_filter.c: In function 'cbf_h5z_filter': ./src/cbf_hdf5_filter.c:751:71: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"signed %ld-bit real IEEE\"\n", ~~^ %d ./src/cbf_hdf5_filter.c:755:75: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"signed %ld-bit integer\"\n", ~~^ %d ./src/cbf_hdf5_filter.c:758:77: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"unsigned %ld-bit integer\"\n", ~~^ %d ./src/cbf_minicbf_header.c: In function 'cbf_set_minicbf_header': ./src/cbf_minicbf_header.c:347:27: warning: variable 'precedence' set but not used [-Wunused-but-set-variable] int dimension[2], precedence[2]; ^~~~~~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': ./src/cbf_nibble_offset.c:603:14: warning: variable 'termflag' set but not used [-Wunused-but-set-variable] int *termflag[17]; ^~~~~~~~ ./src/cbf_nibble_offset.c:569:29: warning: variable 'borrow' set but not used [-Wunused-but-set-variable] unsigned int count, borrow, element[4], prevelement[4], ^~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_decompress_nibble_offset': ./src/cbf_nibble_offset.c:1390:45: warning: right shift count >= width of type [-Wshift-count-overflow] if ((((long)delta[0]>>32)&0xFFFFFFFFL)==0x80000000L&&(((long)delta[0]&0xFFFFFFFFl)==0L)) { ^~ ./src/cbf_nibble_offset.c:1394:49: warning: right shift count >= width of type [-Wshift-count-overflow] if ((((long)delta[0]>>32)&0x80000000L) == 0x80000000L) { ^~ ./src/cbf_nibble_offset.c:1043:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint; ^~~~~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': ./src/cbf_nibble_offset.c:932:21: warning: 'inrun' may be used uninitialized in this function [-Wmaybe-uninitialized] curmode = dmode[inrun]; ~~~~~~~~^~~~~~~~~~~~~~ ./src/cbf_nibble_offset.c:932:21: warning: 'dmode[inrun]' may be used uninitialized in this function [-Wmaybe-uninitialized] ./src/cbf_simple.c: In function 'cbf_get_array_section_rank': ./src/cbf_simple.c:1886:13: warning: variable 'error' set but not used [-Wunused-but-set-variable] int error = 0; ^~~~~ ./src/cbf_simple.c: In function 'cbf_get_array_section_section': ./src/cbf_simple.c:2026:13: warning: variable 'error' set but not used [-Wunused-but-set-variable] int error; ^~~~~ ./src/cbf_simple.c: In function 'cbf_set_beam_center': ./src/cbf_simple.c:8409:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c:8409:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ./src/cbf_simple.c:8580:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c:8580:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_stx.c: In function 'cbf_lex_wrapper': ./src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] cbf_file *cbffile; ^~~~~~~ At top level: ./src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] static const char *const yytname[] = ^~~~~~~ ./src/cbf_ws.c:313:16: warning: 'cbf_create_bracket_tree' defined but not used [-Wunused-function] static int cbf_create_bracket_tree(cbf_node * * brackettree, CBF_NODETYPE brackettype) { ^~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_ws.c: In function 'cbf_find_bracketstring': ./src/cbf_ws.c:1087:26: warning: 'tokentype' may be used uninitialized in this function [-Wmaybe-uninitialized] tokentype[depth-1]= *stringtype; ^ ./src/img.c: In function 'img_read_mar345header': ./src/img.c:1334:44: warning: array subscript -1 is below array bounds of 'char[65]' [-Warray-bounds] for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; ~~~^~ /usr/bin/ar cr lib/libcbf.a *.o /usr/bin/ranlib lib/libcbf.a rm -f *.o mkdir solib rm -f solib/libcbf.so rm -f *.o gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I./include -I./src -I/usr/include/hdf5/serial -c ./src/cbf.c ./src/cbf_airy_disk.c ./src/cbf_alloc.c ./src/cbf_ascii.c ./src/cbf_binary.c ./src/cbf_byte_offset.c ./src/cbf_canonical.c ./src/cbf_codes.c ./src/cbf_compress.c ./src/cbf_context.c ./src/cbf_copy.c ./src/cbf_file.c ./src/cbf_getopt.c ./src/cbf_hdf5.c ./src/cbf_hdf5_filter.c ./src/cbf_lex.c ./src/cbf_minicbf_header.c ./src/cbf_nibble_offset.c ./src/cbf_packed.c ./src/cbf_predictor.c ./src/cbf_read_binary.c ./src/cbf_read_mime.c ./src/cbf_simple.c ./src/cbf_string.c ./src/cbf_stx.c ./src/cbf_tree.c ./src/cbf_uncompressed.c ./src/cbf_write.c ./src/cbf_write_binary.c ./src/cbf_ws.c ./src/cbff.c ./src/md5c.c ./src/img.c ./src/fgetln.c ./src/cbf.c: In function 'cbf_validate': ./src/cbf.c:7240:12: warning: variable 'dtest' set but not used [-Wunused-but-set-variable] double dtest; ^~~~~ ./src/cbf.c:7238:10: warning: variable 'ltest' set but not used [-Wunused-but-set-variable] long ltest; ^~~~~ ./src/cbf.c: In function 'cbf_mpint_leftshift_acc': ./src/cbf.c:8408:16: warning: variable 'sign' set but not used [-Wunused-but-set-variable] unsigned int sign; ^~~~ ./src/cbf_byte_offset.c: In function 'cbf_compress_byte_offset': ./src/cbf_byte_offset.c:284:29: warning: variable 'borrow' set but not used [-Wunused-but-set-variable] unsigned int count, borrow, element[4], prevelement[4], ^~~~~~ ./src/cbf_byte_offset.c: In function 'cbf_decompress_byte_offset_slow': ./src/cbf_byte_offset.c:1075:49: warning: variable 'carry' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint, carry; ^~~~~ ./src/cbf_byte_offset.c:1075:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint, carry; ^~~~~~~~~ ./src/cbf_canonical.c: In function 'cbf_compress_canonical': ./src/cbf_canonical.c:1821:24: warning: variable 'node' set but not used [-Wunused-but-set-variable] cbf_compress_node *node, *start; ^~~~ ./src/cbf_canonical.c:1815:89: warning: variable 'endcode' set but not used [-Wunused-but-set-variable] unsigned int count, i, iint, element[4], lastelement[4], bits, unsign, sign, limit, endcode; ^~~~~~~ ./src/cbf_canonical.c: In function 'cbf_decompress_canonical': ./src/cbf_canonical.c:2176:57: warning: variable 'count64' set but not used [-Wunused-but-set-variable] unsigned int bits, element[4], sign, unsign, limit, count64, count; ^~~~~~~ ./src/cbf_codes.c: In function 'cbf_tobase32k': ./src/cbf_codes.c:600:23: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned char tmp[3]; ^~~ ./src/cbf_codes.c: In function 'cbf_frombase32k': ./src/cbf_codes.c:1317:13: warning: variable 'mah' set but not used [-Wunused-but-set-variable] int mah =0; /*the number of bytes that should be cut from the end*/ ^~~ ./src/cbf_context.c: In function 'cbf_mkdir': ./src/cbf_context.c:525:23: warning: implicit declaration of function 'cbf_cistrcmp'; did you mean 'strcmp'? [-Wimplicit-function-declaration] if (!path || !cbf_cistrcmp(path,"") || !cbf_cistrcmp(path,"(NONE)")) return CBF_SUCCESS; ^~~~~~~~~~~~ strcmp ./src/cbf_context.c: In function 'cbf_mktmpfile': ./src/cbf_context.c:618:30: warning: unused variable 'temp_file' [-Wunused-variable] FILE * control_file, temp_file; ^~~~~~~~~ ./src/cbf_context.c: In function 'cbf_find_tmpdir': ./src/cbf_context.c:712:16: warning: unused variable 'result' [-Wunused-variable] FILE * result; ^~~~~~ ./src/cbf_copy.c: In function 'cbf_copy_value_with_roi': ./src/cbf_copy.c:976:32: warning: variable 'onemore' set but not used [-Wunused-but-set-variable] double onemore; ^~~~~~~ ./src/cbf_copy.c:972:37: warning: variable 'hiword' set but not used [-Wunused-but-set-variable] int loword, hiword; ^~~~~~ ./src/cbf_copy.c:972:29: warning: variable 'loword' set but not used [-Wunused-but-set-variable] int loword, hiword; ^~~~~~ ./src/cbf_copy.c:1867:49: warning: "/*" within comment [-Wcomment] /*if (valtemp < minval || valtemp > maxval) { ./src/cbf_hdf5.c: In function 'cbf_configParse_extractVector': ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4362:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4370:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4378:61: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected a number, got '%s'\n",*ln,*buf); ~~^ ~~~ %u ./src/cbf_hdf5.c:4348:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ ./src/cbf_hdf5.c:4348:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",*ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_config_parse': ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4476:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Duplicate axis definition for minicbf axis '%s'\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4427:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4427:17: note: in definition of macro 'REQUIRE_TOKEN' fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4489:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Duplicate axis definition for Nexus axis '%s'\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4427:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4427:17: note: in definition of macro 'REQUIRE_TOKEN' fprintf(logFile,"Config parsing error on line %lu: expected " #TKN ", got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4514:69: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); ~~^ ~~ %u ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4443:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4443:17: note: in definition of macro 'REQUIRE_NOT_EOL' fprintf(logFile,"Config parsing error on line %lu: unexpected newline\n",ln); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4451:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4451:17: note: in definition of macro 'REQUIRE_NEXUS_AXIS' fprintf(logFile,"Config parsing error on line %lu: Nexus axis '%s' not defined\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:4435:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ ./src/cbf_hdf5.c:4435:17: note: in definition of macro 'REQUIRE_EOL' fprintf(logFile,"Config parsing error on line %lu: expected '\\n', got '%s'\n",ln,tkn); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_h5handle_require_detector': ./src/cbf_hdf5.c:5977:26: warning: variable 'cur_name' set but not used [-Wunused-but-set-variable] const char * cur_name = NULL; ^~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_array_h5file2': ./src/cbf_hdf5.c:6756:72: warning: variable 'wuvaslong' set but not used [-Wunused-but-set-variable] int wsvasstr, wuvasstr, wsvasdbl, wuvasdbl, wsvaslong, wuvaslong; ^~~~~~~~~ ./src/cbf_hdf5.c:6756:61: warning: variable 'wsvaslong' set but not used [-Wunused-but-set-variable] int wsvasstr, wuvasstr, wsvasdbl, wuvasdbl, wsvaslong, wuvaslong; ^~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_nxdata': ./src/cbf_hdf5.c:8093:15: warning: variable 'dsetid' set but not used [-Wunused-but-set-variable] hid_t dsetid; ^~~~~~ ./src/cbf_hdf5.c:8049:22: warning: variable 'nxdetector' set but not used [-Wunused-but-set-variable] const char * nxdetector; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_nxdetectors2': ./src/cbf_hdf5.c:8840:29: warning: variable 'havedmn' set but not used [-Wunused-but-set-variable] int havedmn; ^~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_strcat': ./src/cbf_hdf5.c:9466:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode; ^~~~~~~~~ In file included from ./src/cbf_hdf5.c:258: ./src/cbf_hdf5.c: In function 'cbf_set_NX_parent_path': ./src/cbf_hdf5.c:10454:61: warning: pointer targets in passing argument 2 of 'cbf_row_number' differ in signedness [-Wpointer-sign] cbf_failnez(cbf_row_number(h5handle->scratch_tables,&rownum)); ^~~~~~~ ./include/cbf.h:893:42: note: in definition of macro 'cbf_failnez' #define cbf_failnez(f) { int err; err = (f); if (err) return err; } ^ ./include/cbf.h:1310:5: note: expected 'unsigned int *' but argument is of type 'int *' int cbf_row_number (cbf_handle handle, unsigned int *row); ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_set_NX_axis_path': ./src/cbf_hdf5.c:10607:61: warning: pointer targets in passing argument 2 of 'cbf_row_number' differ in signedness [-Wpointer-sign] cbf_failnez(cbf_row_number(h5handle->scratch_tables,&targetrow)); ^~~~~~~~~~ ./include/cbf.h:893:42: note: in definition of macro 'cbf_failnez' #define cbf_failnez(f) { int err; err = (f); if (err) return err; } ^ ./include/cbf.h:1310:5: note: expected 'unsigned int *' but argument is of type 'int *' int cbf_row_number (cbf_handle handle, unsigned int *row); ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_h5nxaxes': ./src/cbf_hdf5.c:11024:29: warning: unused variable 'maxsize' [-Wunused-variable] hsize_t maxsize[] = {H5S_UNLIMITED}; ^~~~~~~ ./src/cbf_hdf5.c:11022:29: warning: unused variable 'chunk' [-Wunused-variable] hsize_t chunk[] = {1}; ^~~~~ ./src/cbf_hdf5.c:11020:27: warning: unused variable 'mtype' [-Wunused-variable] hid_t mtype = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:11416:49: warning: passing argument 1 of 'cbf_free_text' from incompatible pointer type [-Wincompatible-pointer-types] if (axisendpointpath) cbf_free_text(&axisendpointpath,0); ^~~~~~~~~~~~~~~~~ In file included from ./src/cbf_hdf5.c:270: ./include/cbf_alloc.h:274:33: note: expected 'const char **' but argument is of type 'char **' int cbf_free_text (const char **old_block, size_t *old_nelem); ~~~~~~~~~~~~~^~~~~~~~~ ./src/cbf_hdf5.c:10820:21: warning: unused variable 'two' [-Wunused-variable] hsize_t two = 2; ^~~ ./src/cbf_hdf5.c:10818:21: warning: unused variable 'one' [-Wunused-variable] hsize_t one = 1; ^~~ ./src/cbf_hdf5.c:10798:20: warning: variable 'axisrangetot' set but not used [-Wunused-but-set-variable] char * axisrangetot = NULL; ^~~~~~~~~~~~ ./src/cbf_hdf5.c:10796:20: warning: variable 'axisrangeavg' set but not used [-Wunused-but-set-variable] char * axisrangeavg = NULL; ^~~~~~~~~~~~ ./src/cbf_hdf5.c:10790:26: warning: variable 'axisequipment' set but not used [-Wunused-but-set-variable] const char * axisequipment = NULL; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c:10778:26: warning: variable 'equipmentclass' set but not used [-Wunused-but-set-variable] const char * equipmentclass = NULL; ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10772:60: warning: unused variable 'dprop' [-Wunused-variable] hid_t dtype = CBF_H5FAIL, dspace = CBF_H5FAIL, dprop = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:10772:19: warning: unused variable 'dtype' [-Wunused-variable] hid_t dtype = CBF_H5FAIL, dspace = CBF_H5FAIL, dprop = CBF_H5FAIL; ^~~~~ ./src/cbf_hdf5.c:10770:19: warning: unused variable 'nxaxisrangetotid' [-Wunused-variable] hid_t nxaxisrangetotid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10768:19: warning: unused variable 'nxaxisrangeavgid' [-Wunused-variable] hid_t nxaxisrangeavgid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10766:19: warning: unused variable 'nxaxisendpointid' [-Wunused-variable] hid_t nxaxisendpointid = CBF_H5FAIL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:10678:16: warning: variable 'zero' set but not used [-Wunused-but-set-variable] double zero[1]; ^~~~ ./src/cbf_hdf5.c: In function 'cbf_apply_h5vector_attribute': ./src/cbf_hdf5.c:11614:30: warning: unused variable 'adim' [-Wunused-variable] size_t ii, rank, adim; ^~~~ ./src/cbf_hdf5.c:11610:21: warning: unused variable 'attribsize' [-Wunused-variable] hsize_t attribsize = CBF_H5ERROR; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_find_h5text_dataset_slab': ./src/cbf_hdf5.c:12601:47: warning: unused variable 'ii' [-Wunused-variable] size_t text_size, old_size, new_size, ii; ^~ ./src/cbf_hdf5.c:12591:17: warning: variable 'maxdssize' set but not used [-Wunused-but-set-variable] hsize_t maxdssize[1]; ^~~~~~~~~ ./src/cbf_hdf5.c:12589:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[1]; ^~~~~~ ./src/cbf_hdf5.c:12585:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:12583:17: warning: variable 'curdim' set but not used [-Wunused-but-set-variable] hsize_t curdim[1]; ^~~~~~ ./src/cbf_hdf5.c:12581:17: warning: variable 'chunk' set but not used [-Wunused-but-set-variable] hsize_t chunk[1] = {1}; ^~~~~ ./src/cbf_hdf5.c: In function 'cbf_require_h5text_dataset_slab': ./src/cbf_hdf5.c:12821:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[1]; ^~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5double_vector_dataset_slab': ./src/cbf_hdf5.c:13604:17: warning: variable 'dssize' set but not used [-Wunused-but-set-variable] hsize_t dssize[2]; ^~~~~~ ./src/cbf_hdf5.c:13602:16: warning: unused variable 'dsexists' [-Wunused-variable] htri_t dsexists; ^~~~~~~~ ./src/cbf_hdf5.c:13594:17: warning: unused variable 'count' [-Wunused-variable] hsize_t count[2] = {1,1}; ^~~~~ ./src/cbf_hdf5.c:13592:17: warning: unused variable 'stride' [-Wunused-variable] hsize_t stride[2] = {1,1}; ^~~~~~ ./src/cbf_hdf5.c:13588:13: warning: unused variable 'ndims' [-Wunused-variable] int ndims = 0; ^~~~~ ./src/cbf_hdf5.c:13584:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5double_dataset_slab': ./src/cbf_hdf5.c:13717:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:13701:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5long_dataset_slab': ./src/cbf_hdf5.c:13985:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:13969:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_add_h5ulong_dataset_slab': ./src/cbf_hdf5.c:14252:17: warning: variable 'memsize' set but not used [-Wunused-but-set-variable] hsize_t memsize[1] = {1}; ^~~~~~~ ./src/cbf_hdf5.c:14236:15: warning: variable 'ndatasetspace' set but not used [-Wunused-but-set-variable] hid_t ndatasetspace; ^~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_h5category': ./src/cbf_hdf5.c:16253:34: warning: variable 'units' set but not used [-Wunused-but-set-variable] const char * units; ^~~~~ ./src/cbf_hdf5.c:16251:34: warning: variable 'mappedname' set but not used [-Wunused-but-set-variable] const char * mappedname; ^~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__detector_op': ./src/cbf_hdf5.c:18775:61: warning: passing argument 2 of 'cbf_set_value' makes pointer from integer without a cast [-Wint-conversion] CBF_CALL(cbf_set_value(cbf,value[0])); ~~~~~^~~ ./src/cbf_hdf5.c:793:27: note: in definition of macro 'CBF_CALL' if (CBF_SUCCESS!=(error|=(exp))) { \ ^~~ In file included from ./src/cbf_hdf5.c:258: ./include/cbf.h:1330:51: note: expected 'const char *' but argument is of type 'char' int cbf_set_value (cbf_handle handle, const char *value); ~~~~~~~~~~~~^~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': ./src/cbf_hdf5.c:21729:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] cbf_node * node = NULL; ^~~~ ./src/cbf_hdf5.c:21982:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21982:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; ^~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21983:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21983:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; ^~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21984:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; ^~ ./src/cbf_hdf5.c:21984:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; ^~~~~~~~~~~~~~~ ./src/cbf_hdf5.c:21323:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] unsigned int data_row = ~0x0; ^~~~~~~~ ./src/cbf_hdf5.c:22049:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] cbf_node * diffrn_scan_axis = NULL; ^~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': ./src/cbf_hdf5.c:25706:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] const char * rotation_axis_path = NULL; ^~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': ./src/cbf_hdf5.c:25917:26: warning: unused variable 'equipment_component' [-Wunused-variable] const char * equipment_component = NULL; ^~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': ./src/cbf_hdf5.c:26247:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] cbf_node * axis_rotation_axis = NULL; ^~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_write_minicbf_h5file': ./src/cbf_hdf5.c:27294:44: warning: unused variable 'buf' [-Wunused-variable] char * buf = malloc(1+ H5Tget_size(currType)); ^~~ ./src/cbf_hdf5.c: In function 'cbf_object_visit': ./src/cbf_hdf5.c:29281:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] int binary_id, bits, sign, type, checked_digest, realarray = 0; ^~~~~~~~~~~~~~ ./src/cbf_hdf5.c:29281:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] int binary_id, bits, sign, type, checked_digest, realarray = 0; ^~~~ At top level: ./src/cbf_hdf5.c:8968:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] static int cbf_require_nxdetectors(const cbf_handle handle, ^~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2': ./src/cbf_hdf5.c:6188:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] sprintf(buffer,"%06d",block); ^~~~ ./src/cbf_hdf5.c:6188:36: note: directive argument in the range [1, 2147483647] sprintf(buffer,"%06d",block); ^~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from ./include/cbf.h:253, from ./src/cbf_hdf5.c:258: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_hdf5_filter.c: In function 'cbf_h5z_filter': ./src/cbf_hdf5_filter.c:751:71: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"signed %ld-bit real IEEE\"\n", ~~^ %d ./src/cbf_hdf5_filter.c:755:75: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"signed %ld-bit integer\"\n", ~~^ %d ./src/cbf_hdf5_filter.c:758:77: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] sprintf (text, "X-Binary-Element-Type: \"unsigned %ld-bit integer\"\n", ~~^ %d ./src/cbf_minicbf_header.c: In function 'cbf_set_minicbf_header': ./src/cbf_minicbf_header.c:347:27: warning: variable 'precedence' set but not used [-Wunused-but-set-variable] int dimension[2], precedence[2]; ^~~~~~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': ./src/cbf_nibble_offset.c:603:14: warning: variable 'termflag' set but not used [-Wunused-but-set-variable] int *termflag[17]; ^~~~~~~~ ./src/cbf_nibble_offset.c:569:29: warning: variable 'borrow' set but not used [-Wunused-but-set-variable] unsigned int count, borrow, element[4], prevelement[4], ^~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_decompress_nibble_offset': ./src/cbf_nibble_offset.c:1390:45: warning: right shift count >= width of type [-Wshift-count-overflow] if ((((long)delta[0]>>32)&0xFFFFFFFFL)==0x80000000L&&(((long)delta[0]&0xFFFFFFFFl)==0L)) { ^~ ./src/cbf_nibble_offset.c:1394:49: warning: right shift count >= width of type [-Wshift-count-overflow] if ((((long)delta[0]>>32)&0x80000000L) == 0x80000000L) { ^~ ./src/cbf_nibble_offset.c:1043:13: warning: variable 'errorcode' set but not used [-Wunused-but-set-variable] int errorcode, overflow, numints, iint; ^~~~~~~~~ ./src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': ./src/cbf_nibble_offset.c:932:21: warning: 'inrun' may be used uninitialized in this function [-Wmaybe-uninitialized] curmode = dmode[inrun]; ~~~~~~~~^~~~~~~~~~~~~~ ./src/cbf_nibble_offset.c:932:21: warning: 'dmode[inrun]' may be used uninitialized in this function [-Wmaybe-uninitialized] ./src/cbf_simple.c: In function 'cbf_get_array_section_rank': ./src/cbf_simple.c:1886:13: warning: variable 'error' set but not used [-Wunused-but-set-variable] int error = 0; ^~~~~ ./src/cbf_simple.c: In function 'cbf_get_array_section_section': ./src/cbf_simple.c:2026:13: warning: variable 'error' set but not used [-Wunused-but-set-variable] int error; ^~~~~ ./src/cbf_simple.c: In function 'cbf_set_beam_center': ./src/cbf_simple.c:8409:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c:8409:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ./src/cbf_simple.c:8580:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_simple.c:8580:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] double nindex1, nindex2, ncenter1, ncenter2; ^~~~~~~~ ./src/cbf_stx.c: In function 'cbf_lex_wrapper': ./src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] cbf_file *cbffile; ^~~~~~~ At top level: ./src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] static const char *const yytname[] = ^~~~~~~ ./src/cbf_ws.c:313:16: warning: 'cbf_create_bracket_tree' defined but not used [-Wunused-function] static int cbf_create_bracket_tree(cbf_node * * brackettree, CBF_NODETYPE brackettype) { ^~~~~~~~~~~~~~~~~~~~~~~ ./src/cbf_ws.c: In function 'cbf_find_bracketstring': ./src/cbf_ws.c:1087:26: warning: 'tokentype' may be used uninitialized in this function [-Wmaybe-uninitialized] tokentype[depth-1]= *stringtype; ^ ./src/img.c: In function 'img_read_mar345header': ./src/img.c:1334:44: warning: array subscript -1 is below array bounds of 'char[65]' [-Warray-bounds] for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; ~~~^~ gcc -o solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 rm -f *.o gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/adscimg2cbf.c examples/adscimg2cbf_sub.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/adscimg2cbf In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/adscimg2cbf.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/adscimg2cbf.c: In function 'main': examples/adscimg2cbf.c:245:27: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); ^ examples/adscimg2cbf.c:176:10: warning: unused variable 'thickness' [-Wunused-variable] double thickness=0.; ^~~~~~~~~ examples/adscimg2cbf.c:162:7: warning: variable 'cbf_status' set but not used [-Wunused-but-set-variable] int cbf_status; ^~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/adscimg2cbf_sub.c:177: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of 'convertroi' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] if (convertroi(roi, smv_size1, smv_size2, ^~~ examples/adscimg2cbf_sub.c:433:22: note: expected 'char *' but argument is of type 'const char *' int convertroi(char *roi, int fastdim, int slowdim, ~~~~~~^~~ examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of 'cbf_free_text' from incompatible pointer type [-Wincompatible-pointer-types] cbf_free_text(&log,NULL); ^~~~ In file included from ./include/cbf_minicbf_header.h:262, from examples/adscimg2cbf_sub.c:179: ./include/cbf_alloc.h:274:33: note: expected 'const char **' but argument is of type 'char **' int cbf_free_text (const char **old_block, size_t *old_nelem); ~~~~~~~~~~~~~^~~~~~~~~ examples/adscimg2cbf_sub.c:1868:30: warning: variable 'valmax' set but not used [-Wunused-but-set-variable] double valnew,valmin,valmax; ^~~~~~ examples/adscimg2cbf_sub.c:1868:16: warning: variable 'valnew' set but not used [-Wunused-but-set-variable] double valnew,valmin,valmax; ^~~~~~ examples/adscimg2cbf_sub.c:530:27: warning: unused variable 'kjcm' [-Wunused-variable] int ki, kj, kicm, kjcm; ^~~~ examples/adscimg2cbf_sub.c:530:21: warning: unused variable 'kicm' [-Wunused-variable] int ki, kj, kicm, kjcm; ^~~~ examples/adscimg2cbf_sub.c:522:28: warning: variable 'smv_bin_type' set but not used [-Wunused-but-set-variable] int smv_bin, smv_adc, smv_bin_type; ^~~~~~~~~~~~ examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub': examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of 'adscimg2cbf_sub2' makes integer from pointer without a cast [-Wint-conversion] NULL,NULL,NULL,NULL, ^~~~ examples/adscimg2cbf_sub.c:481:29: note: expected 'size_t' {aka 'unsigned int'} but argument is of type 'void *' size_t old_int_data_size, ~~~~~~~^~~~~~~~~~~~~~~~~ examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': examples/adscimg2cbf_sub.c:588:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(temp, "%s=%s;\n", s, s1); ^~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from ./include/cbf.h:253, from examples/adscimg2cbf_sub.c:177: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 2050 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ examples/adscimg2cbf_sub.c:1846:53: warning: 'smooth_data_as_int' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { ^ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/arvai_test.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/arvai_test In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/arvai_test.c:13: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cbf2adscimg.c examples/cbf2adscimg_sub.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cbf2adscimg In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/cbf2adscimg.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/cbf2adscimg_sub.c:126: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/cbf2adscimg_sub.c: In function 'padhd': examples/cbf2adscimg_sub.c:217:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( hp=header; *hp != '}'; hp++); hp++; ^~~ examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for ( hp=header; *hp != '}'; hp++); hp++; ^~ examples/cbf2adscimg_sub.c: In function 'cbfhandle2img_sub': examples/cbf2adscimg_sub.c:247:57: warning: variable 'dirinc' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~~ examples/cbf2adscimg_sub.c:247:46: warning: variable 'dirend' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~~ examples/cbf2adscimg_sub.c:247:35: warning: variable 'dirsta' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~~ examples/cbf2adscimg_sub.c:247:28: warning: variable 'second' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~~ examples/cbf2adscimg_sub.c:247:21: warning: variable 'first' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~ examples/cbf2adscimg_sub.c:247:13: warning: variable 'colrow' set but not used [-Wunused-but-set-variable] int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; ^~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cbf2nexus.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cbf2nexus In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from examples/cbf2nexus.c:236: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cif2c.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cif2c In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/cif2c.c:296: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cif2cbf.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cif2cbf In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/cif2cbf.c:455: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/cif2cbf.c: In function 'main': examples/cif2cbf.c:1953:33: warning: unused variable 'kdb' [-Wunused-variable] size_t idb, kdb; ^~~ examples/cif2cbf.c:734:17: warning: variable 'hdf5out' set but not used [-Wunused-but-set-variable] const char *hdf5out; ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cbf_standardize_numbers.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cbf_standardize_numbers In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/cbf_standardize_numbers.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/cbf_standardize_numbers.c: In function 'main': examples/cbf_standardize_numbers.c:43:37: warning: variable 'fpart' set but not used [-Wunused-but-set-variable] double number, anumber, ascale, fpart; ^~~~~ examples/cbf_standardize_numbers.c:38:9: warning: variable 'bracket' set but not used [-Wunused-but-set-variable] int bracket; ^~~~~~~ examples/cbf_standardize_numbers.c:57:24: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); ^~ examples/cbf_standardize_numbers.c:57:20: note: directive argument in the range [0, 2147483647] sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from examples/cbf_standardize_numbers.c:10: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/convert_image.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/convert_image In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/convert_image.c:296: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/convert_image.c: In function 'main': examples/convert_image.c:533:7: warning: variable 'transpose' set but not used [-Wunused-but-set-variable] int transpose; ^~~~~~~~~ /usr/bin/ld: /tmp/ccw7vj85.o: in function `main': ./examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/convert_minicbf.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/convert_minicbf In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/convert_minicbf.c:307: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/convert_minicbf.c: In function 'cbf_parse_sls_header': examples/convert_minicbf.c:613:17: warning: variable 'notime' set but not used [-Wunused-but-set-variable] int notime; ^~~~~~ examples/convert_minicbf.c: In function 'main': examples/convert_minicbf.c:2110:17: warning: variable 'ignore' set but not used [-Wunused-but-set-variable] int ignore; ^~~~~~ examples/convert_minicbf.c:1855:9: warning: variable 'transpose' set but not used [-Wunused-but-set-variable] int transpose; ^~~~~~~~~ chmod 755 ./examples/batch_convert_minicbf.sh gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/img2cif.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/img2cif In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/img2cif.c:284: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/makecbf.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/makecbf In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/makecbf.c:175: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/minicbf2nexus.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/minicbf2nexus In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from examples/minicbf2nexus.c:250: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/nexus2cbf.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/nexus2cbf In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from examples/nexus2cbf.c:236: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/roi_peaksearch.c examples/dps_peaksearch.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/roi_peaksearch In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/roi_peaksearch.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/roi_peaksearch.c: In function 'main': examples/roi_peaksearch.c:101:12: warning: unused variable 'header' [-Wunused-variable] char *header; ^~~~~~ examples/roi_peaksearch.c:100:11: warning: unused variable 'field' [-Wunused-variable] char field[128]; ^~~~~ examples/roi_peaksearch.c:96:12: warning: variable 'binagain' set but not used [-Wunused-but-set-variable] int binagain = 0; ^~~~~~~~ examples/roi_peaksearch.c:91:19: warning: unused variable 'lhead' [-Wunused-variable] int istat, lhead; ^~~~~ examples/roi_peaksearch.c:91:12: warning: unused variable 'istat' [-Wunused-variable] int istat, lhead; ^~~~~ examples/roi_peaksearch.c:89:27: warning: unused variable 'type' [-Wunused-variable] int dim, size[10], type; ^~~~ examples/roi_peaksearch.c:89:17: warning: unused variable 'size' [-Wunused-variable] int dim, size[10], type; ^~~~ examples/roi_peaksearch.c:89:12: warning: unused variable 'dim' [-Wunused-variable] int dim, size[10], type; ^~~ examples/roi_peaksearch.c:83:12: warning: unused variable 'hp' [-Wunused-variable] char * hp; ^~ examples/roi_peaksearch.c:80:21: warning: unused variable 'raw' [-Wunused-variable] unsigned short *raw; ^~~ At top level: examples/roi_peaksearch.c:17:13: warning: 'gethd' defined but not used [-Wunused-function] static void gethd ( char* field, char* value, char* header ) ^~~~~ examples/roi_peaksearch.c: In function 'main': examples/roi_peaksearch.c:449:24: warning: 'tempy' may be used uninitialized in this function [-Wmaybe-uninitialized] int tempx, tempy; ^~~~~ examples/roi_peaksearch.c:128:12: warning: 'pmaskData' may be used uninitialized in this function [-Wmaybe-uninitialized] int* pmaskData; ^~~~~~~~~ examples/roi_peaksearch.c:543:21: warning: 'ovlp' may be used uninitialized in this function [-Wmaybe-uninitialized] nStat = cbf_write_widefile (hCBFile, ovlp, 1, CBF, MIME_HEADERS | MSG_DIGEST, ENC_NONE|ENC_CRTERM | ENC_LFTERM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/dps_peaksearch.c:68: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/sequence_match.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/sequence_match In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/sequence_match.c:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ examples/sequence_match.c: In function 'main': examples/sequence_match.c:423:9: warning: variable 'leftdevnull' set but not used [-Wunused-but-set-variable] int leftdevnull, rightdevnull; ^~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I./include -I./src -I/usr/include/hdf5/serial examples/testcell.C -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testcell gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/testalloc.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testalloc In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/testalloc.c:51: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/testreals.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testreals In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/testreals.c:238: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/testflat.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testflat In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/testflat.c:238: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/testflatpacked.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testflatpacked In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from ./include/cbf.h:253, from examples/testflatpacked.c:238: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/testhdf5.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/testhdf5 In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from examples/testhdf5.c:51: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/test_cbf_airy_disk.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/test_cbf_airy_disk In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from ./include/cbf_airy_disk.h:262, from examples/test_cbf_airy_disk.c:261: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.5.18+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I./include -I./src -I/usr/include/hdf5/serial examples/cbf_testxfelread.c -L./solib -lcbf -lm -L/usr/lib/i386-linux-gnu/hdf5/serial -lhdf5 -o bin/cbf_testxfelread In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from examples/cbf_testxfelread.h:261, from examples/cbf_testxfelread.c:292: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mkdir -p /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu mkdir -p /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a': No such file or directory make[1]: [Makefile:1084: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a': No such file or directory make[1]: [Makefile:1085: baseinstall] Error 1 (ignored) cp ./lib/libcbf.a /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a #-chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so #-cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf_old.so cp ./solib/libcbf.so /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so.1 ln -s -r -f /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so #ln -s -f /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/lib_cbf.so chmod 644 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.a chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/lib/i386-linux-gnu/libcbf.so # # includes # chmod -R 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib cp -r ./include /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[1]: [Makefile:1114: baseinstall] Error 1 (ignored) cp ./bin/adscimg2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[1]: [Makefile:1116: baseinstall] Error 1 (ignored) cp ./bin/cbf2adscimg /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[1]: [Makefile:1118: baseinstall] Error 1 (ignored) cp ./bin/cbf_standardize_numbers /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[1]: [Makefile:1120: baseinstall] Error 1 (ignored) cp ./bin/convert_image /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[1]: [Makefile:1122: baseinstall] Error 1 (ignored) cp ./bin/convert_minicbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[1]: [Makefile:1124: baseinstall] Error 1 (ignored) cp ./bin/makecbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[1]: [Makefile:1126: baseinstall] Error 1 (ignored) cp ./bin/img2cif /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[1]: [Makefile:1128: baseinstall] Error 1 (ignored) cp ./bin/cif2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[1]: [Makefile:1130: baseinstall] Error 1 (ignored) cp ./bin/minicbf2nexus /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[1]: [Makefile:1132: baseinstall] Error 1 (ignored) cp ./bin/cbf2nexus /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[1]: [Makefile:1134: baseinstall] Error 1 (ignored) cp ./bin/nexus2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[1]: [Makefile:1136: baseinstall] Error 1 (ignored) cp ./bin/roi_peaksearch /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[1]: [Makefile:1138: baseinstall] Error 1 (ignored) cp ./bin/sequence_match /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[1]: [Makefile:1140: baseinstall] Error 1 (ignored) cp ./bin/testalloc /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[1]: [Makefile:1142: baseinstall] Error 1 (ignored) cp ./bin/arvai_test /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[1]: [Makefile:1144: baseinstall] Error 1 (ignored) cp ./bin/cif2c /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[1]: [Makefile:1146: baseinstall] Error 1 (ignored) cp ./bin/testreals /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[1]: [Makefile:1148: baseinstall] Error 1 (ignored) cp ./bin/testflat /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[1]: [Makefile:1150: baseinstall] Error 1 (ignored) cp ./bin/testflatpacked /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp ./bin/tiff2cbf /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[1]: [Makefile:1154: baseinstall] Error 1 (ignored) cp ./bin/test_cbf_airy_disk /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp ./bin/test_cbf_airy_disk /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[1]: [Makefile:1158: baseinstall] Error 1 (ignored) cp ./bin/testhdf5 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[1]: [Makefile:1160: baseinstall] Error 1 (ignored) cp ./examples/batch_convert_minicbf.sh /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-0.9.5.18+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[1]: Leaving directory '/build/cbflib-0.9.5.18+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/cbflib-0.9.5.18+dfsg1' # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-0.9.5.18+dfsg1' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installinit -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cbflib-bin/usr/bin/img2cif debian/cbflib-bin/usr/bin/cbf2nexus debian/cbflib-bin/usr/bin/makecbf debian/cbflib-bin/usr/bin/cif2cbf debian/cbflib-bin/usr/bin/convert_image were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cbflib-bin/usr/bin/img2cif debian/cbflib-bin/usr/bin/cbf2nexus debian/cbflib-bin/usr/bin/makecbf debian/cbflib-bin/usr/bin/cif2cbf debian/cbflib-bin/usr/bin/convert_image were not linked against libm.so.6 (they use none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.5.18+dfsg1-1_i386.deb'. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.5.18+dfsg1-1_i386.deb'. dpkg-deb: building package 'libcbf1-dbgsym' in '../libcbf1-dbgsym_0.9.5.18+dfsg1-1_i386.deb'. dpkg-deb: building package 'cbflib-bin-dbgsym' in '../cbflib-bin-dbgsym_0.9.5.18+dfsg1-1_i386.deb'. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.5.18+dfsg1-1_i386.deb'. dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.5.18+dfsg1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cbflib_0.9.5.18+dfsg1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28072 and its subdirectories I: Current time: Fri Jun 21 08:08:02 -12 2019 I: pbuilder-time-stamp: 1561147682 Fri Jun 21 20:08:03 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Fri Jun 21 20:08:03 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Fri Jun 21 20:09:43 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Fri Jun 21 20:09:43 UTC 2019 I: cbflib_0.9.5.18+dfsg1-1_i386.changes: Format: 1.8 Date: Mon, 15 Oct 2018 20:58:57 +0300 Source: cbflib Binary: cbflib-bin cbflib-bin-dbgsym cbflib-doc libcbf-dev libcbf1 libcbf1-dbgsym Architecture: i386 all Version: 0.9.5.18+dfsg1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Teemu Ikonen Description: cbflib-bin - utilities to manipulate CBF files cbflib-doc - documentation for CBFlib libcbf-dev - development files for CBFlib libcbf1 - shared library supporting CBFlib Changes: cbflib (0.9.5.18+dfsg1-1) unstable; urgency=medium . * New upstream version 0.9.5.18+dfsg1 * watch: Check new releases from github. * watch: Add dversionmangle to strip dfsg-part. * Drop old patches types.patch and autotools.patch. * makefile-fix: Get system HDF5 config from pkg-config. * makefile-fix: Fix CBFLIB_DONT_USE_LOCAL_TIFF config var. * makefile-fix: Allow disabling PyCBF from env with NOPYCBF=yes. * makefile-fix: Install libs to $(CBF_PREFIX)/$(INSTALL_LIB). * makefile-fix: Install lib to SOVERSION and add symlinks. * makefile-fix: Allow disabling libimg and libfcb builds. * makefile-fix: Do not link example progs w. libimg. * makefile-fix: Add SONAME to linker flags. * makefile-fix: Add LDFLAGS to SOLDFLAGS to pick up hardening flags etc. * makefile-fix: Append CFLAGS, CPPFLAGS and LDFLAGS from the environment. * makefile-fix: Simplify building example programs. * makefile-deb: Use $DESTDIR/usr as CBF_PREFIX. * makefile-deb: Do not build tiff2cbf. * Makefile-deb: Use dynamic linking to cbflib in programs. * compat: Set debhelper compat to 11. * rules: Add get-orig-source target for dfsg-version. * rules: Export buildflags and configuration, remove overrides. * rules: Add --no-parallel arg to dh. * rules: Remove duplicate files in dh_install override. * Rename libcbf0 to libcbf1 due to SONAME bump. * Add libcb1.symbols file. * *.install: Install from new tmpdirs. * cbflib-doc.install: Install all .html doc files. * cbflib-bin.install: Also install cbf2nexus. * copyright: Update years, separate section for md5. * copyright: Add Source-section explaining dfsg-repack. * control: Update Vcs-* fields to point to salsa. * control: Add build-dep to pkg-config. * control: Make libcbf-dev depend on libhdf5-dev. * changelog: Remove trailing whitespace. Checksums-Sha1: 99dfc05fc3db20187a3b4b0e212365472696d761 152280 cbflib-bin-dbgsym_0.9.5.18+dfsg1-1_i386.deb fe44435789c688386c3b6dc939dcfc83aaa10b06 71956 cbflib-bin_0.9.5.18+dfsg1-1_i386.deb ad6fbed4bca15c3c9b16480e5cc5719b637dc5e6 317740 cbflib-doc_0.9.5.18+dfsg1-1_all.deb 9953f4376107ca5fd812d83e78e84a292f28e15a 6060 cbflib_0.9.5.18+dfsg1-1_i386.buildinfo 19d51a4634b24d24c70c65f2ff5cf536cbf12602 468164 libcbf-dev_0.9.5.18+dfsg1-1_i386.deb eec4d09e0c864a81dda05e7284936492654383d0 843980 libcbf1-dbgsym_0.9.5.18+dfsg1-1_i386.deb c5bbd00a69794dc4eed3a7e4f5fb82da66ccc7f7 369448 libcbf1_0.9.5.18+dfsg1-1_i386.deb Checksums-Sha256: 056c17c7e67188dbe38c773c8fecf8859d02f8bccdbcf1e131d65d01bbda28cc 152280 cbflib-bin-dbgsym_0.9.5.18+dfsg1-1_i386.deb 15f92e172a509292c01a47e0f9802a124ecc7c01e1f98501e1dda60e99a8d758 71956 cbflib-bin_0.9.5.18+dfsg1-1_i386.deb f7d469b9c1bfd21a4660cda2842244524cf313f73fe7ebec398e2caeeeefa8d1 317740 cbflib-doc_0.9.5.18+dfsg1-1_all.deb de0e2152a21dcd3da07a1d2149f9d1f42e49b5753b86c60dd2147b9ee365d664 6060 cbflib_0.9.5.18+dfsg1-1_i386.buildinfo 1d538ddd6b1c342999acf2e32f9ddde1e1f0058628e30f1a8ca9cff603d6c614 468164 libcbf-dev_0.9.5.18+dfsg1-1_i386.deb 664e271d7b202356060fcbc52410541f6431c40c89ebfc7ac26bc003b998fb2c 843980 libcbf1-dbgsym_0.9.5.18+dfsg1-1_i386.deb 472a48bc3c44a401c7f0845beb2ec8f9921866c379c215ba732b4aad069a595b 369448 libcbf1_0.9.5.18+dfsg1-1_i386.deb Files: 569def866e511f28a4249b9aa59050a7 152280 debug optional cbflib-bin-dbgsym_0.9.5.18+dfsg1-1_i386.deb 165bba36c0aab88df57b276452d87412 71956 science optional cbflib-bin_0.9.5.18+dfsg1-1_i386.deb 1eebed9aac415c807b086c999c10ece1 317740 doc optional cbflib-doc_0.9.5.18+dfsg1-1_all.deb c089733be925f65a0e607ef61999b4dc 6060 science optional cbflib_0.9.5.18+dfsg1-1_i386.buildinfo cf17d7cdd0ef1f50e747f05061a72e4d 468164 libdevel optional libcbf-dev_0.9.5.18+dfsg1-1_i386.deb 3d869a55ecd125fc25ead0e439127098 843980 debug optional libcbf1-dbgsym_0.9.5.18+dfsg1-1_i386.deb 59c068e7b83dbeb82107ded8adffae5a 369448 libs optional libcbf1_0.9.5.18+dfsg1-1_i386.deb Fri Jun 21 20:09:44 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.dJ5LTovwcL/cbflib_0.9.5.18+dfsg1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.dJ5LTovwcL/cbflib_0.9.5.18+dfsg1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.dJ5LTovwcL/cbflib_0.9.5.18+dfsg1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.dJ5LTovwcL/b1/cbflib_0.9.5.18+dfsg1-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.dJ5LTovwcL/b2/cbflib_0.9.5.18+dfsg1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.279s) 0.279s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.052s) 0.052s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 21 20:09:46 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 21 20:09:46 UTC 2019 I: cbflib from buster built successfully and reproducibly on i386. Fri Jun 21 20:09:47 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 21 20:09:47 UTC 2019 I: Submitting 8.0K b1/cbflib_0.9.5.18+dfsg1-1_i386.buildinfo.asc Fri Jun 21 20:09:49 UTC 2019 I: Submitting 8.0K b2/cbflib_0.9.5.18+dfsg1-1_i386.buildinfo.asc Fri Jun 21 20:10:18 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 21 20:10:18 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 21 20:10:18 UTC 2019 I: Removing signed cbflib_0.9.5.18+dfsg1-1_i386.buildinfo.asc files: removed './b1/cbflib_0.9.5.18+dfsg1-1_i386.buildinfo.asc' removed './b2/cbflib_0.9.5.18+dfsg1-1_i386.buildinfo.asc'