Thu Apr 16 23:46:07 UTC 2020 I: starting to build concavity/buster/i386 on jenkins on '2020-04-16 23:45' Thu Apr 16 23:46:07 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/5831/console.log Thu Apr 16 23:46:07 UTC 2020 I: Downloading source for buster/concavity=0.1+dfsg.1-4 --2020-04-16 23:46:08-- http://deb.debian.org/debian/pool/main/c/concavity/concavity_0.1+dfsg.1-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2046 (2.0K) Saving to: ‘concavity_0.1+dfsg.1-4.dsc’ 0K . 100% 4.43M=0s 2020-04-16 23:46:08 (4.43 MB/s) - ‘concavity_0.1+dfsg.1-4.dsc’ saved [2046/2046] Thu Apr 16 23:46:09 UTC 2020 I: concavity_0.1+dfsg.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: concavity Binary: concavity Architecture: any Version: 0.1+dfsg.1-4 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: http://compbio.cs.princeton.edu/concavity/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/concavity Vcs-Git: https://salsa.debian.org/med-team/concavity.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: concavity deb science optional arch=any Checksums-Sha1: dbc00046f42c9523b68fdc4a0a660e3d5bb375bd 310216 concavity_0.1+dfsg.1.orig.tar.xz b5d121bfab2b3a415340d0fb5ebabafe68d80aff 14360 concavity_0.1+dfsg.1-4.debian.tar.xz Checksums-Sha256: a73bd2c8781e90c7e4d0e350deaff94ebde08391038a6abe551df2da05e3f819 310216 concavity_0.1+dfsg.1.orig.tar.xz fb1497b6119116d2ad1f449de319c523419a420765548568eefdd80de0b18cba 14360 concavity_0.1+dfsg.1-4.debian.tar.xz Files: c02e7e028b066ee61ac021fc6d185e4e 310216 concavity_0.1+dfsg.1.orig.tar.xz 6dde668ba5212ee1374ea70393fec02c 14360 concavity_0.1+dfsg.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwK/tkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEsqg//WOi1LGf1ymX/BjPmnjGshwMWnLmcWrZR UbjrXZdMM0BSrzSbKk3qhVeYOrJjV5PDmPbJHvwOgYdb9eppOZixRfPafFxBH7Ki 8VaPDvgxfSm/c9yWAdRQ4NgJLXrC2smsvCC9j+GMrHDZEJs6RtKDVCw9X9AxE703 Tf6ij6/30l0cDMxXcj9ndNK7Jas3rC01QYDAvvzMuZraxR//f5tMXdpJC2NOUrTf ZECovlgOjAYb7L2wblTPZI3oF7ks60PxjzOr/yh5BjIi0FvVY4uyszF1sUUgUVgk WvtF3ng4ULl7Ju1UjLfaxoDdGjV02QbQ51MQKJi0Op0oHtSw7tCdewtE0EzOfXIe 7gDawGQiOR2+PKX1/0h9JthowTVzideU1wnF7j/cLZsumlwKRJsLI+R5lTV3XYX5 dG4MCwHtu+nHxwxIJvxzi16caz9SSpkllYj3kfpGuRZXMO02bnTxPCN01SL7wGEy TAZgcZDT+rqstCO8ByXaHfXwCmBZbyBcsUuptl/7oeclIgjqKhAOaKTRO8Vt97jR KEpld54wh854ASCXmg58zi76Kk+oq7mwGPsKV6YEWf0P9EjpFbwj19VaoeFsU/FN fkxbJ63v/RhM5eG1FxXu5ux7394ECu/ragZ+KWrSNjaVFAmuqAE9vj4k+sJCJfJL ZzUNAHRwE8U= =+Z7P -----END PGP SIGNATURE----- Thu Apr 16 23:46:09 UTC 2020 I: Checking whether the package is not for us Thu Apr 16 23:46:09 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Thu Apr 16 23:46:09 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Thu Apr 16 23:51:18 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 16 11:46:17 -12 2020 I: pbuilder-time-stamp: 1587080777 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [concavity_0.1+dfsg.1-4.dsc] I: copying [./concavity_0.1+dfsg.1.orig.tar.xz] I: copying [./concavity_0.1+dfsg.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 7 11:14:33 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./concavity_0.1+dfsg.1-4.dsc dpkg-source: info: extracting concavity in concavity-0.1+dfsg.1 dpkg-source: info: unpacking concavity_0.1+dfsg.1.orig.tar.xz dpkg-source: info: unpacking concavity_0.1+dfsg.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying default_target_all dpkg-source: info: applying safe_recursive_make dpkg-source: info: applying freeglut dpkg-source: info: applying CFLAGSasf dpkg-source: info: applying spelling dpkg-source: info: applying noopengllink dpkg-source: info: applying compiler_errors dpkg-source: info: applying manpage dpkg-source: info: applying threshold_range_cutoff dpkg-source: info: applying remove_ply dpkg-source: info: applying cross.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.4 MB in 2s (9740 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/concavity-0.1+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package concavity dpkg-buildpackage: info: source version 0.1+dfsg.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/concavity-0.1+dfsg.1' rm -f ChangeLog make[1]: Leaving directory '/build/concavity-0.1+dfsg.1' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/concavity-0.1+dfsg.1' make target "TARGET=opt" sed -e 's|__docdir__|/usr/share/doc/concavity|g;s|__pkgdatadir__||g;s|__sysconfdir__||g;s|__bindir__||g;s|__VERSION__|0.1.1|g;s|__PACKAGE_VERSION__||g;' "concavity.1.pod" | \ pod2man -c 'User Commands' -r "0.1.1" -name CONCAVITY > "concavity.1" make[2]: Entering directory '/build/concavity-0.1+dfsg.1' cd pkgs && make opt make[3]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs' make target "TARGET=opt" make[4]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs' cd RNBasics && make opt make[5]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/RNBasics' make ../../lib/i686/libRNBasics.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/RNBasics' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNBasics.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNTime.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNGrfx.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNRgb.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNHeap.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNQueue.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNArray.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNSvd.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNIntval.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNScalar.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNType.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNFlags.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNMem.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNError.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c RNBase.C mkdir -p ../../lib/i686 rm -f ../../lib/i686/libRNBasics.a ar ur ../../lib/i686/libRNBasics.a RNBasics.o RNTime.o RNGrfx.o RNRgb.o RNHeap.o RNQueue.o RNArray.o RNSvd.o RNIntval.o RNScalar.o RNType.o RNFlags.o RNMem.o RNError.o RNBase.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/i686/libRNBasics.a make[6]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/RNBasics' make[5]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/RNBasics' cd R2Shapes && make opt make[5]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/R2Shapes' make ../../lib/i686/libR2Shapes.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/R2Shapes' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Shapes.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Draw.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Io.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Dist.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Cont.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Isect.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Parall.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Perp.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Relate.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Grid.C R2Grid.C: In member function 'int R2Grid::WriteRAW(const char*) const': R2Grid.C:2325:54: warning: narrowing conversion of '(int)((const R2Grid*)this)->R2Grid::grid_resolution[0]' from 'int' to 'unsigned int' inside { } [-Wnarrowing] unsigned int header[4] = { magic, grid_resolution[0], grid_resolution[1], 1 }; ~~~~~~~~~~~~~~~~~^ R2Grid.C:2325:74: warning: narrowing conversion of '(int)((const R2Grid*)this)->R2Grid::grid_resolution[1]' from 'int' to 'unsigned int' inside { } [-Wnarrowing] unsigned int header[4] = { magic, grid_resolution[0], grid_resolution[1], 1 }; ~~~~~~~~~~~~~~~~~^ R2Grid.C: In member function 'int R2Grid::ReadPFM(const char*)': R2Grid.C:2373:9: warning: variable 'endian' set but not used [-Wunused-but-set-variable] float endian; ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Arc.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Curve.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Polygon.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Circle.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Box.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Solid.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Shape.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Affine.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Xform.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Matrix.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Halfspace.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Span.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Ray.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Line.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Point.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Vector.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R2Image.C R2Image.C: In member function 'int R2Image::ReadPFM(const char*)': R2Image.C:856:8: warning: variable 'endian_string' set but not used [-Wunused-but-set-variable] char endian_string[256]; ^~~~~~~~~~~~~ R2Image.C: In member function 'int R2Image::WriteRAW(const char*) const': R2Image.C:1305:37: warning: narrowing conversion of '(int)((const R2Image*)this)->R2Image::width' from 'int' to 'unsigned int' inside { } [-Wnarrowing] unsigned int header[4] = { magic, width, height, ncomponents }; ^~~~~ R2Image.C:1305:44: warning: narrowing conversion of '(int)((const R2Image*)this)->R2Image::height' from 'int' to 'unsigned int' inside { } [-Wnarrowing] unsigned int header[4] = { magic, width, height, ncomponents }; ^~~~~~ R2Image.C:1305:52: warning: narrowing conversion of '(int)((const R2Image*)this)->R2Image::ncomponents' from 'int' to 'unsigned int' inside { } [-Wnarrowing] unsigned int header[4] = { magic, width, height, ncomponents }; ^~~~~~~~~~~ mkdir -p ../../lib/i686 rm -f ../../lib/i686/libR2Shapes.a ar ur ../../lib/i686/libR2Shapes.a R2Shapes.o R2Draw.o R2Io.o R2Dist.o R2Cont.o R2Isect.o R2Parall.o R2Perp.o R2Relate.o R2Grid.o R2Arc.o R2Curve.o R2Polygon.o R2Circle.o R2Box.o R2Solid.o R2Shape.o R2Affine.o R2Xform.o R3Matrix.o R2Halfspace.o R2Span.o R2Ray.o R2Line.o R2Point.o R2Vector.o R2Image.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/i686/libR2Shapes.a make[6]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/R2Shapes' make[5]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/R2Shapes' cd R3Shapes && make opt make[5]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/R3Shapes' make ../../lib/i686/libR3Shapes.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/R3Shapes' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Shapes.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Draw.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3MeshSearchTree.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Kdtree.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Isect.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cont.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Dist.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Parall.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Perp.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Relate.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Align.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Mesh.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ellipse.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Circle.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3TriangleArray.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Triangle.C R3Mesh.C: In member function 'R3MeshType R3Mesh::Intersection(const R3Ray&, R3MeshIntersection*) const': R3Mesh.C:1705:14: warning: variable 'min_t' set but not used [-Wunused-but-set-variable] RNScalar min_t = FLT_MAX; ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Surface.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ellipsoid.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Sphere.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cone.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Cylinder.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Box.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Solid.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Shape.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Affine.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Xform.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Crdsys.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Triad.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R4Matrix.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Grid.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Halfspace.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Plane.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Span.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Ray.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Line.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Point.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Vector.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c R3Base.C mkdir -p ../../lib/i686 rm -f ../../lib/i686/libR3Shapes.a ar ur ../../lib/i686/libR3Shapes.a R3Shapes.o R3Draw.o R3MeshSearchTree.o R3Kdtree.o R3Isect.o R3Cont.o R3Dist.o R3Parall.o R3Perp.o R3Relate.o R3Align.o R3Mesh.o R3Ellipse.o R3Circle.o R3TriangleArray.o R3Triangle.o R3Surface.o R3Ellipsoid.o R3Sphere.o R3Cone.o R3Cylinder.o R3Box.o R3Solid.o R3Shape.o R3Affine.o R3Xform.o R3Crdsys.o R3Triad.o R4Matrix.o R3Grid.o R3Halfspace.o R3Plane.o R3Span.o R3Ray.o R3Line.o R3Point.o R3Vector.o R3Base.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/i686/libR3Shapes.a make[6]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/R3Shapes' make[5]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/R3Shapes' #cd R3Graphics && make opt cd PDB && make opt make[5]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/PDB' make ../../lib/i686/libPDB.a "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/build/concavity-0.1+dfsg.1/pkgs/PDB' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDB.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBElement.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAminoAcid.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAtom.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBResidue.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBChain.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBModel.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBFile.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBBond.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBAtomTypes.C PDBFile.C: In member function 'int PDBFile::ReadConsurfFiles(char*)': PDBFile.C:867:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] RNBoolean found = 0; ^~~~~ PDBFile.C: In member function 'int PDBFile::ReadHsspFiles(char*)': PDBFile.C:1009:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] RNBoolean found = 0; ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBUtil.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c PDBDistance.C mkdir -p ../../lib/i686 rm -f ../../lib/i686/libPDB.a ar ur ../../lib/i686/libPDB.a PDB.o PDBElement.o PDBAminoAcid.o PDBAtom.o PDBResidue.o PDBChain.o PDBModel.o PDBFile.o PDBBond.o PDBAtomTypes.o PDBUtil.o PDBDistance.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating ../../lib/i686/libPDB.a make[6]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/PDB' make[5]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs/PDB' #cd freeglut && make opt make[4]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs' make[3]: Leaving directory '/build/concavity-0.1+dfsg.1/pkgs' cd apps && make opt make[3]: Entering directory '/build/concavity-0.1+dfsg.1/apps' make target "TARGET=opt" make[4]: Entering directory '/build/concavity-0.1+dfsg.1/apps' cd concavity && make opt make[5]: Entering directory '/build/concavity-0.1+dfsg.1/apps/concavity' make ../../bin/i686/concavity "CFLAGS="-Wno-write-strings" -Wall -I. -I../../pkgs -O3 -DNDEBUG "-Wno-write-strings" -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS= -L../../lib/i686 -O -L../../lib/i686 -g -Wl,-z,relro -Wl,-z,now" make[6]: Entering directory '/build/concavity-0.1+dfsg.1/apps/concavity' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c grid_creation.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c pocket_extraction.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-write-strings -Wall -I. -I../../pkgs -O3 -DNDEBUG -Wno-write-strings -Wall -I. -I../../pkgs -g -g -O2 -ffile-prefix-map=/build/concavity-0.1+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -c concavity.C concavity.C: In function 'int main(int, char**)': concavity.C:759:29: warning: '.grd' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(grid_outfile, "%s_%s.grd", pdb_id, output_basename); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 1029) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:764:29: warning: '.dx' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(grid_outfile, "%s_%s.dx", pdb_id, output_basename); ^~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 5 or more bytes (assuming 1028) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:769:29: warning: '_pocket.pdb' directive writing 11 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(grid_outfile, "%s_%s_pocket.pdb", pdb_id, output_basename); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 13 or more bytes (assuming 1036) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:774:29: warning: '.grdtxt' directive writing 7 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(grid_outfile, "%s_%s.grdtxt", pdb_id, output_basename); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 9 or more bytes (assuming 1032) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:318:23: warning: '%s' directive writing up to 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s_%s_%s.scores", pdb_id, chain_name, basename); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 10 or more bytes (assuming 1036) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:386:30: warning: '_residue.pdb' directive writing 12 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(res_pred_filename, "%s_%s_residue.pdb", pdb_id, basename); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 14 or more bytes (assuming 1037) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:821:32: warning: '%s' directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] sprintf(pymol_script_name, "%s_%s.pml", pdb_id, output_basename); ^~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 1029) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:839:39: warning: '%s' directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] sprintf(pymol_pocket_script_name, "%s_%s_pocket.pml", pdb_id, output_basename); ^~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 13 or more bytes (assuming 1036) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concavity.C:856:40: warning: '%s' directive writing up to 1023 bytes into a region of size 256 [-Wformat-overflow=] sprintf(pymol_residue_script_name, "%s_%s_residue.pml", pdb_id, output_basename); ^~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ../../pkgs/RNBasics/RNExtern.h:7, from ../../pkgs/RNBasics/RNBasics.h:16, from ../../pkgs/R2Shapes/R2Shapes.h:10, from ../../pkgs/R3Shapes/R3Shapes.h:10, from concavity.C:50: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 14 or more bytes (assuming 1037) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../bin/i686 g++ -o ../../bin/i686/concavity -L../../lib/i686 -O -L../../lib/i686 -g -Wl,-z,relro -Wl,-z,now grid_creation.o pocket_extraction.o concavity.o -lPDB -lR3Shapes -lR2Shapes -lRNBasics make[6]: Leaving directory '/build/concavity-0.1+dfsg.1/apps/concavity' make[5]: Leaving directory '/build/concavity-0.1+dfsg.1/apps/concavity' make[4]: Leaving directory '/build/concavity-0.1+dfsg.1/apps' make[3]: Leaving directory '/build/concavity-0.1+dfsg.1/apps' make[2]: Leaving directory '/build/concavity-0.1+dfsg.1' make[1]: Leaving directory '/build/concavity-0.1+dfsg.1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/concavity-0.1+dfsg.1' sed -ne '/^--- Revision History ---/,/^---/{ /^--- Inst/d; p; }' README.txt > ChangeLog dh_installchangelogs make[1]: Leaving directory '/build/concavity-0.1+dfsg.1' dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'concavity-dbgsym' in '../concavity-dbgsym_0.1+dfsg.1-4_i386.deb'. dpkg-deb: building package 'concavity' in '../concavity_0.1+dfsg.1-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../concavity_0.1+dfsg.1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27219 and its subdirectories I: Current time: Thu Apr 16 11:51:17 -12 2020 I: pbuilder-time-stamp: 1587081077 Thu Apr 16 23:51:18 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Thu Apr 16 23:51:18 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Thu Apr 16 23:51:52 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Thu Apr 16 23:51:52 UTC 2020 I: concavity_0.1+dfsg.1-4_i386.changes: Format: 1.8 Date: Sat, 08 Dec 2018 00:08:02 +0100 Source: concavity Binary: concavity concavity-dbgsym Architecture: i386 Version: 0.1+dfsg.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: concavity - predictor of protein ligand binding sites from structure and cons Closes: 904145 Changes: concavity (0.1+dfsg.1-4) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Helmut Grohne ] * Make sure C++ compiler is used for C++ sources Closes: #904145 . [ Andreas Tille ] * Standards-Version: 4.2.1 Checksums-Sha1: 984be0c93d6f76ac148aabdb4cf95946ac8924db 1574336 concavity-dbgsym_0.1+dfsg.1-4_i386.deb a75e467e0fffa96730edbd616c9d7d7d9e5203cf 4622 concavity_0.1+dfsg.1-4_i386.buildinfo fdd0a3aee06ed634a3a434446a0723a989b31d8c 309640 concavity_0.1+dfsg.1-4_i386.deb Checksums-Sha256: 70f964c7582762bdbb65dd8a117688c2a1e925ae6bcde5c59191d93802d3ffdd 1574336 concavity-dbgsym_0.1+dfsg.1-4_i386.deb 6ffb5064538522a7a6b111974a1423e98687b5a2dba78833f44fabff106e5a38 4622 concavity_0.1+dfsg.1-4_i386.buildinfo ccbc897721b9ee30d140c67b40354b03846f2c77bef858dded1003a607a979e3 309640 concavity_0.1+dfsg.1-4_i386.deb Files: 9d0ff11b4adff4232ecd0497bcb375ff 1574336 debug optional concavity-dbgsym_0.1+dfsg.1-4_i386.deb eee525fa236f55d6dea5f1032383e30c 4622 science optional concavity_0.1+dfsg.1-4_i386.buildinfo 42d7c7269eb3af69dccbeb0f772da893 309640 science optional concavity_0.1+dfsg.1-4_i386.deb Thu Apr 16 23:52:02 UTC 2020 I: diffoscope 140 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.n3W59J7VmU/concavity_0.1+dfsg.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.n3W59J7VmU/concavity_0.1+dfsg.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.n3W59J7VmU/concavity_0.1+dfsg.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.n3W59J7VmU/b1/concavity_0.1+dfsg.1-4_i386.changes /srv/reproducible-results/rbuild-debian/tmp.n3W59J7VmU/b2/concavity_0.1+dfsg.1-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 4.998s) 4.998s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.144s) 0.144s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Apr 17 00:05:47 UTC 2020 I: diffoscope 140 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 17 00:05:47 UTC 2020 I: concavity from buster built successfully and reproducibly on i386. Fri Apr 17 00:06:06 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Apr 17 00:06:06 UTC 2020 I: Submitting 8.0K b1/concavity_0.1+dfsg.1-4_i386.buildinfo.asc Fri Apr 17 00:06:08 UTC 2020 I: Submitting 8.0K b2/concavity_0.1+dfsg.1-4_i386.buildinfo.asc Fri Apr 17 00:06:10 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 17 00:06:10 UTC 2020 I: Done submitting .buildinfo files. Fri Apr 17 00:06:10 UTC 2020 I: Removing signed concavity_0.1+dfsg.1-4_i386.buildinfo.asc files: removed './b1/concavity_0.1+dfsg.1-4_i386.buildinfo.asc' removed './b2/concavity_0.1+dfsg.1-4_i386.buildinfo.asc'