Fri Jun 28 22:32:50 UTC 2019 I: starting to build ctdopts/buster/i386 on jenkins on '2019-06-28 22:32' Fri Jun 28 22:32:50 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/20/console.log Fri Jun 28 22:32:50 UTC 2019 I: Downloading source for buster/ctdopts=1.2-3 --2019-06-28 22:32:50-- http://deb.debian.org/debian/pool/main/c/ctdopts/ctdopts_1.2-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/c/ctdopts/ctdopts_1.2-3.dsc [following] --2019-06-28 22:32:51-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/ctdopts/ctdopts_1.2-3.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2038 (2.0K) Saving to: ‘ctdopts_1.2-3.dsc’ 0K . 100% 159M=0s 2019-06-28 22:32:51 (159 MB/s) - ‘ctdopts_1.2-3.dsc’ saved [2038/2038] Fri Jun 28 22:32:51 UTC 2019 I: ctdopts_1.2-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ctdopts Binary: python3-ctdopts Architecture: all Version: 1.2-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/WorkflowConversion/CTDopts Standards-Version: 4.1.3 Vcs-Browser: https://salsa.debian.org/med-team/ctdopts.git Vcs-Git: https://salsa.debian.org/med-team/ctdopts.git Testsuite: autopkgtest Testsuite-Triggers: 2to3, python3-all Build-Depends: debhelper (>= 11), dh-python, python3, python3-setuptools, 2to3, python3-tz Package-List: python3-ctdopts deb python optional arch=all Checksums-Sha1: 02c306f6e08fba97a5325cb6bb3a25e039ac8d2d 33461 ctdopts_1.2.orig.tar.gz ac2b3210851c2b43fb8671868c39f2ef0bfa0326 3048 ctdopts_1.2-3.debian.tar.xz Checksums-Sha256: 85d7a77bc781509eb31657cb0b0ffecfd8f8b0161aacd22ff3ad1395eb4b136b 33461 ctdopts_1.2.orig.tar.gz aa5fa171087f5b122b3c813073adef715c09122feb207a19dde3cb743d19492f 3048 ctdopts_1.2-3.debian.tar.xz Files: 4434506326994623fb567d66d66bf9c4 33461 ctdopts_1.2.orig.tar.gz 4b4c11dee8b2fdcf22291b8319b168d5 3048 ctdopts_1.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlqWnAQACgkQPCZ2P2xn 5uJZiQ//TvPUwtPdKUeek/KtfLY6/wt+xyD/2BnkQeOfnJpeJ1W5RsqqQz89mJaH mdCxTFhL05tqdq4SapfOEOJV8ZRDXfyMAxTBKMF6YqAnoaeV0b79KOUIJlK25VAG fBhrLCcOGCPu4ibj/pJshkvtf1u9hq9u+/av7LWU2nGccBfJDmcHzmalNTZDrXSf eCjta2hirUEpjCq8v7VoyjoMdaTOrx0AVxy4VXIx+P64j8MNXak0fO0BSTfvhA8a XPfbMjfmtFus43WOVvbvONog3uAkZmn4kr3fZ97+yssG/la2h2FQSBOVexJyUz/8 uuPROd+TE6cHukxVSw34uUjxocYS8Bpr0r1dnlngKWptTEsuVPNELd3x8R4ySO+P qHMejJ8gTCgTkGNyXEK9Usy8Zk68ZhQEj+U+Is8tQw2MXjRLsPtZBywQ6ezouuod Fq6huC2WforhoKZnl6hQrxh+FQ9PQuactd4jPD3Fc6Abux2nyU7WQyfHPICg9Ewr WiGNDw69ARZK3KJYP0mVTUOAVGRzXk6ST1tDkbLys4Wsts5NPILlBXZqGAElHMLg i979LMnqH9m5id6k1r0XhTQqJbP4eDMwQL/tzOff7liTShSW6ND9wQ5ldA/25Aqf 0pGPCwTu9DmZm+pUYy6R6JK+8J1SMM/INFFbQx75aW+tZNm8yXw= =y8Oe -----END PGP SIGNATURE----- Fri Jun 28 22:32:51 UTC 2019 I: Checking whether the package is not for us Fri Jun 28 22:32:51 UTC 2019 I: Starting 1st build on remote node profitbricks-build16-i386.debian.net. Fri Jun 28 22:32:51 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build16-i386.debian.net. Fri Jun 28 22:33:49 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 30 16:55:53 -12 2020 I: pbuilder-time-stamp: 1596171353 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [ctdopts_1.2-3.dsc] I: copying [./ctdopts_1.2.orig.tar.gz] I: copying [./ctdopts_1.2-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 28 00:09:40 2018 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ctdopts_1.2-3.dsc dpkg-source: info: extracting ctdopts in ctdopts-1.2 dpkg-source: info: unpacking ctdopts_1.2.orig.tar.gz dpkg-source: info: unpacking ctdopts_1.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3 I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), dh-python, python3, python3-setuptools, 2to3, python3-tz dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on 2to3; however: Package 2to3 is not installed. pbuilder-satisfydepends-dummy depends on python3-tz; however: Package python3-tz is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: 2to3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3-tz{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 26.7 MB of archives. After unpacking 102 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2 [590 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2 [103 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2 [1746 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2 [1751 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2 [330 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 2to3 all 3.7.3-1 [20.8 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-setuptools all 40.8.0-1 [306 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-tz all 2019.1-1 [27.1 kB] Fetched 26.7 MB in 1s (28.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../2-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../4-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../6-libssl1.1_1.1.1c-1_i386.deb ... Unpacking libssl1.1:i386 (1.1.1c-1) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../8-libexpat1_2.2.6-2_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2_i386.deb ... Unpacking python3.7-minimal (3.7.3-2) ... Setting up libssl1.1:i386 (1.1.1c-1) ... Setting up libpython3.7-minimal:i386 (3.7.3-2) ... Setting up libexpat1:i386 (2.2.6-2) ... Setting up python3.7-minimal (3.7.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20126 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../2-libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../4-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython3.7-stdlib:i386. Preparing to unpack .../5-libpython3.7-stdlib_3.7.3-2_i386.deb ... Unpacking libpython3.7-stdlib:i386 (3.7.3-2) ... Selecting previously unselected package python3.7. Preparing to unpack .../6-python3.7_3.7.3-2_i386.deb ... Unpacking python3.7 (3.7.3-2) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../7-libpython3-stdlib_3.7.3-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20587 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_i386.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../06-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package 2to3. Preparing to unpack .../07-2to3_3.7.3-1_all.deb ... Unpacking 2to3 (3.7.3-1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../08-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_i386.deb ... 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I: Building the package I: Running cd /build/ctdopts-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ctdopts dpkg-buildpackage: info: source version 1.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/ctdopts-1.2' dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts copying CTDopts/CTDopts.py -> /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts copying CTDopts/__init__.py -> /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts Fixing /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/CTDopts.py /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/CTDopts.py /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma # an override, not a PYBUILD directive, as we only need to do this once # not for every Python version 2to3 --write --nobackups --no-diffs --output-dir=debian example.py lib2to3.main: Output in 'debian' will mirror the input directory '' layout. RefactoringTool: Skipping optional fixer: buffer RefactoringTool: Skipping optional fixer: idioms RefactoringTool: Skipping optional fixer: set_literal RefactoringTool: Skipping optional fixer: ws_comma RefactoringTool: Refactored example.py RefactoringTool: Writing converted example.py to debian/example.py. RefactoringTool: Files that were modified: RefactoringTool: example.py make[1]: Leaving directory '/build/ctdopts-1.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ctdopts-1.2' export PYBUILD_SYSTEM=custom; dh_auto_test I: pybuild base:217: PYTHONPATH=/build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build python3.7 debian/example.py /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/CTDopts.py:790: UserWarning: Argument restrictions for positive_int violated. Restriction: 0:. Value: -5 (':'.join(lineage), param.restrictions.ctd_restriction_string(), validated_value)) Model being written to exampleTool.ctd... Model loaded from exampleTool.ctd... For debugging purposes we can output a human readable representation of Parameter objects. Here's the first one: PARAMETER positive_int type: int default: 5 tags: advanced, magic restrictions on numeric range: 0 to None description: A positive integer parameter The following parameters were registered in the model: ['positive_int', 'input_files', 'this_that', 'param_1', 'param_2', 'param_3'] The same parameters with subgroup information, if they were registered under parameter groups: ['positive_int', 'input_files', 'this_that', 'subparams:param_1', 'subparams:param_2', 'subparams:subsubparam:param_3'] A dictionary of parameters with default values, returned by CTDModel.get_defaults(): { '1': { 'positive_int': 5, 'subparams': { 'param_1': 5.5, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'}, 'version': '1.0'} As you can see, parameter values are usually stored in nested dictionaries. If you want a flat dictionary, you canget that using CTDopts.flatten_dict(). Flat keys can be either tuples of tree node (subgroup) names down to the parameter... { ('1',): { 'positive_int': 5, 'subparams': { 'param_1': 5.5, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'}, ('version',): '1.0'} ...or they can be strings where nesing levels are separated by colons: { '1': { 'positive_int': 5, 'subparams': { 'param_1': 5.5, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'}, 'version': '1.0'} We can create dictionaries of arguments on our own that we want to validate against the model.CTDopts can read them from argument-storing CTD files or from the command line, but we can just define them in a nested dictionary on our own as well. We start with defining them explicitly. { 'input_files': ['file1.fastq', 'file2.fastq', 'file3.fastq'], 'positive_int': 111, 'subparams': {'param_1': '999.0'}} We can validate these arguments against the model, and get a dictionary with parameter types correctly casted and defaults set. Note that subparams:param_1 was casted from string to a floating point number because that's how it was defined in the model. { 'input_files': ['file1.fastq', 'file2.fastq', 'file3.fastq'], 'positive_int': 111, 'subparams': { 'param_1': 999.0, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'} We can write a CTD file containing these validated argument values. Just call CTDModel.write_ctd() with an extra parameter: the nested argument dictionary containing the actual values. As mentioned earlier, CTDopts can load argument values from CTD files. Feel free to change some values in exampleTool_preset_params.ctd you've just written, and load it back. { 'input_files': ['file1.fastq', 'file2.fastq', 'file3.fastq'], 'positive_int': '111', 'subparams': { 'param_1': '999.0', 'param_2': ['0.0', '2.5', '5.0'], 'subsubparam': {'param_3': '2'}}, 'this_that': 'this'} Notice that all the argument values are strings now. This is because we didn't validate them against the model, just loaded some stuff from a file into a dictionary. If you want to cast them, call CTDModel.validate_args(): { 'input_files': ['file1.fastq', 'file2.fastq', 'file3.fastq'], 'positive_int': 111, 'subparams': { 'param_1': 999.0, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'} Now certain parameters may have restrictions that we might want to validate for as well. Let's set the parameter positive_int to a negative value, and try to validate it with a strictness level enforce_restrictions=1. This will register a warning, but still accept the value. Validation enforcement levels can be 0, 1 or 2 for type-casting, restriction-checking and required argument presence. They can be set with the keywords enforce_type, enforce_restrictions and enforce_required respectively. Let's increase strictness for restriction checking. CTDModel.validate_args() will now raise an exception that we'll catch: Argument restrictions for positive_int failed. Restriction: 0:. Value: -5 One might want to combine arguments loaded from a CTD file with arguments coming from elsewhere, like the command line.In that case, the method CTDopts.override_args(*arg_dicts) creates a combined argument dictionary where argument values are always taken from the rightmost (last) dictionary that has them. Let's override a few parameters: { 'input_files': ['file1.fastq', 'file2.fastq', 'file3.fastq'], 'positive_int': 777, 'subparams': { 'param_1': 999.0, 'param_2': [0.0, 2.5, 5.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'that'} So how to deal with command line arguments? If we have a model, we can look for its arguments. Call CTDModel.parse_cl_args() with either a string of the command line call or a list with the split words. By default, it will assume a '--' prefix before parameter names, but it can be overridden with prefix='-'.Grouped parameters are expected in --group:subgroup:param_x format. { 'input_files': ['a.fastq', 'b.fastq'], 'positive_int': '44', 'subparams': { 'param_1': 5.5, 'param_2': ['5.0', '5.5', '6.0'], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'} Override other parameters with them, and validate it against the model: { 'input_files': ['a.fastq', 'b.fastq'], 'positive_int': 44, 'subparams': { 'param_1': 5.5, 'param_2': [5.0, 5.5, 6.0], 'subsubparam': {'param_3': 2}}, 'this_that': 'this'} One last thing: certain command line directives that are specific to CTD functionality can be parsed for, to help your script performing common tasks. These are CTD argument input, CTD model file writing and CTD argument file writing. CTDopts.parse_cl_directives() can also be customized as to what directives to look for if the defaults --input_ctd, --write_tool_ctd and --write_param_ctd respectively don't satisfy you. { 'input_ctd': 'exampleTool_preset_params.ctd', 'write_param_ctd': 'new_preset_params.ctd', 'write_tool_ctd': None} { 'input_ctd': 'exampleTool_preset_params_2.ctd', 'write_param_ctd': None, 'write_tool_ctd': True} Finally, writing CTDs with logging information, passing a dictionary with a 'log' keyword, using any or all of the fields shown below. make[1]: Leaving directory '/build/ctdopts-1.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/ctdopts-1.2/debian/python3-ctdopts running install running build running build_py running install_lib creating /build/ctdopts-1.2/debian/python3-ctdopts/usr creating /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib creating /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7 creating /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages creating /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts copying /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/CTDopts.py -> /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts copying /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/__init__.py -> /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts creating /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts/__pycache__ copying /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/__pycache__/CTDopts.cpython-37.pyc -> /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts/__pycache__ copying /build/ctdopts-1.2/.pybuild/cpython3_3.7_CTDopts/build/CTDopts/__pycache__/__init__.cpython-37.pyc -> /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts/__pycache__ byte-compiling /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts/CTDopts.py to CTDopts.cpython-37.pyc byte-compiling /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info creating CTDopts.egg-info writing CTDopts.egg-info/PKG-INFO writing dependency_links to CTDopts.egg-info/dependency_links.txt writing requirements to CTDopts.egg-info/requires.txt writing top-level names to CTDopts.egg-info/top_level.txt writing manifest file 'CTDopts.egg-info/SOURCES.txt' reading manifest file 'CTDopts.egg-info/SOURCES.txt' writing manifest file 'CTDopts.egg-info/SOURCES.txt' Copying CTDopts.egg-info to /build/ctdopts-1.2/debian/python3-ctdopts/usr/lib/python3.7/dist-packages/CTDopts-1.1.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-ctdopts' in '../python3-ctdopts_1.2-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ctdopts_1.2-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/44383 and its subdirectories I: Current time: Thu Jul 30 16:56:14 -12 2020 I: pbuilder-time-stamp: 1596171374 Fri Jun 28 22:33:50 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Fri Jun 28 22:33:50 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Fri Jun 28 22:46:34 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Fri Jun 28 22:46:34 UTC 2019 I: ctdopts_1.2-3_i386.changes: Format: 1.8 Date: Sun, 25 Feb 2018 09:27:06 -0800 Source: ctdopts Binary: python3-ctdopts Architecture: all Version: 1.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-ctdopts - Gives your Python tools a CTD-compatible interface Changes: ctdopts (1.2-3) unstable; urgency=medium . * Fix VCS*. Checksums-Sha1: 46ebf130623738b34d17ce9c7bd3f101657e5d4a 4814 ctdopts_1.2-3_i386.buildinfo ddf1d295216515dfcc65af98e864023dbba0771d 22012 python3-ctdopts_1.2-3_all.deb Checksums-Sha256: 0b6e141498640f45a1b18a069d582beeba9bd26257e185f2af13ec8fa6187e04 4814 ctdopts_1.2-3_i386.buildinfo 07fce6947190eb1c7a68330beafbd401912585dc5e083e61a26ea8dd4a511ee4 22012 python3-ctdopts_1.2-3_all.deb Files: 2b62841ae5f8f13b13bdff2b9b738330 4814 python optional ctdopts_1.2-3_i386.buildinfo 264a404d839c923224ebd5a0de87afe9 22012 python optional python3-ctdopts_1.2-3_all.deb Fri Jun 28 22:46:38 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.UYfAcry3nN/ctdopts_1.2-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.UYfAcry3nN/ctdopts_1.2-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.UYfAcry3nN/ctdopts_1.2-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.UYfAcry3nN/b1/ctdopts_1.2-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.UYfAcry3nN/b2/ctdopts_1.2-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.063s) 1.063s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.256s) 0.256s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 28 22:46:45 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 28 22:46:45 UTC 2019 I: ctdopts from buster built successfully and reproducibly on i386. Fri Jun 28 22:46:48 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 28 22:46:48 UTC 2019 I: Submitting 8.0K b1/ctdopts_1.2-3_i386.buildinfo.asc Fri Jun 28 22:46:49 UTC 2019 I: Submitting 8.0K b2/ctdopts_1.2-3_i386.buildinfo.asc Fri Jun 28 22:46:50 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 28 22:46:50 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 28 22:46:50 UTC 2019 I: Removing signed ctdopts_1.2-3_i386.buildinfo.asc files: removed './b1/ctdopts_1.2-3_i386.buildinfo.asc' removed './b2/ctdopts_1.2-3_i386.buildinfo.asc'