Sat Jun 22 21:12:39 UTC 2019 I: starting to build dascrubber/buster/i386 on jenkins on '2019-06-22 21:12' Sat Jun 22 21:12:39 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/258/console.log Sat Jun 22 21:12:39 UTC 2019 I: Downloading source for buster/dascrubber=1.1-1 --2019-06-22 21:12:39-- http://deb.debian.org/debian/pool/main/d/dascrubber/dascrubber_1.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/d/dascrubber/dascrubber_1.1-1.dsc [following] --2019-06-22 21:12:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dascrubber/dascrubber_1.1-1.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 1939 (1.9K) Saving to: ‘dascrubber_1.1-1.dsc’ 0K . 100% 147M=0s 2019-06-22 21:12:39 (147 MB/s) - ‘dascrubber_1.1-1.dsc’ saved [1939/1939] Sat Jun 22 21:12:39 UTC 2019 I: dascrubber_1.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dascrubber Binary: dascrubber Architecture: any Version: 1.1-1 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://dazzlerblog.wordpress.com/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/dascrubber Vcs-Git: https://salsa.debian.org/med-team/dascrubber.git Build-Depends: debhelper (>= 11~) Package-List: dascrubber deb science optional arch=any Checksums-Sha1: 909b8b8afb434d98b8da375ddd6e99c33c6cf74f 116926 dascrubber_1.1.orig.tar.gz 1627c8e8688c1dc74e452526d0928cff6d65c2b9 3500 dascrubber_1.1-1.debian.tar.xz Checksums-Sha256: cd350ac73a580e659c2f3f6fea12c99ceaa62445a7d7c968af97410acab88fcb 116926 dascrubber_1.1.orig.tar.gz 0954dea684d6cca595af869fad93820760f4f27a002b4bf6deaa245fc29d9f66 3500 dascrubber_1.1-1.debian.tar.xz Files: fbeda989c9ab8ae7aff802810be4a704 116926 dascrubber_1.1.orig.tar.gz b72357bec1fed2b45a16f6cbed8636f6 3500 dascrubber_1.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvVbDIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG1Mg/+Onjh69MO3IUjtk9AQk1uHcWP9qt0h/l/ SWQdSyB/UYeXu1j5XH6lO1q3t7lfW42S9p1JIx4MqBPTBdApCo8XBXNSgv5h36HS On20tD/dmdFgg3yBp5t+yi5GOtMDXPQgKNdBhFgWBfe7uYmvUCWI6QN+ScxyCf1Q IK7tngDZ8+wTkD001wWReTWaQkwojpx+0uqQ7QpI9ts6rGsI5XPfM/kV0GxtdG4E IcS4oZ1KyPV+cPlfrxKk/Xcwp2CyT9aLm9zL/uIH4zunvOt0BTOpTHBT6mqjIFGh bpjTTomoGh4a2RGrazzIA6q5bNtOq4pPWHowXcCtN04fUiJEQTWKIj4Z6raLjVce yhSiBnB4y6roJFytfqpKWQCwu8xEah1MSy/IRH/n4uLwGoSJbjnYYXh4kT3OR6Qb BMeqDcx6p0iySOXFQWqV/4wESrWfMSJ4EN+gD06nTUKIO/IgM8DqaCh1cnbvp2DN Y8yDrDkTUXTo6rmLbHGQkXYc+4zVLUNoykZL5G+qpK2anxQpgEcIvXCbJkbGiZQu AsAnX2bXIoqFoq8TjcJXEqdCFzq5D4KwAUQpUNHD6MLdqmrUBWJvLyWuTk3S9O6v E/05ZT9l/nTspNM3nGUp4th8eTPwTt1t7nGNT4HL4AB/rxChDWcgr0F5ypJ9wsi9 tugC96b/bBw= =qSlK -----END PGP SIGNATURE----- Sat Jun 22 21:12:39 UTC 2019 I: Checking whether the package is not for us Sat Jun 22 21:12:39 UTC 2019 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Sat Jun 22 21:12:39 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Sat Jun 22 21:24:36 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 22 09:12:42 -12 2019 I: pbuilder-time-stamp: 1561237962 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dascrubber_1.1-1.dsc] I: copying [./dascrubber_1.1.orig.tar.gz] I: copying [./dascrubber_1.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 27 19:58:42 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dascrubber_1.1-1.dsc dpkg-source: info: extracting dascrubber in dascrubber-1.1 dpkg-source: info: unpacking dascrubber_1.1.orig.tar.gz dpkg-source: info: unpacking dascrubber_1.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying destdir-install.patch dpkg-source: info: applying compiler-flags.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.3 MB in 19s (1030 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dascrubber-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dascrubber dpkg-buildpackage: info: source version 1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/dascrubber-1.1' rm -f DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim rm -fr *.dSYM rm -f scrubber.tar.gz make[1]: Leaving directory '/build/dascrubber-1.1' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dascrubber-1.1' cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAScover.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAScover cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASqv.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASqv cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAStrim.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAStrim cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASpatch.c align.h align.c DB.c DB.h QV.c QV.h -lm -o DASpatch cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASedit.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASedit cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASmap.c DB.c DB.h QV.c QV.h -lm -o DASmap cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASrealign.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASrealign cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPcover.c DB.c DB.h QV.c QV.h -lm -o REPcover cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPqv.c DB.c DB.h QV.c QV.h -lm -o REPqv cc -g -O2 -ffile-prefix-map=/build/dascrubber-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPtrim.c DB.c DB.h QV.c QV.h -lm -o REPtrim DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DAStrim.c: In function 'main': DAStrim.c:1456:42: warning: 'lidx' may be used uninitialized in this function [-Wmaybe-uninitialized] if (Lidx >= 0 && ovls[Lidx].path.aepos + (blen-ovls[Lidx].path.bepos) ^ DAStrim.c:1356:9: note: 'lidx' was declared here int lidx, ridx, sidx, Lidx, Ridx; ^~~~ DAStrim.c:1444:42: warning: 'ridx' may be used uninitialized in this function [-Wmaybe-uninitialized] if (Ridx >= 0 && ovls[Ridx].path.abpos - ovls[Ridx].path.bbpos ^ DAStrim.c:1356:15: note: 'ridx' was declared here int lidx, ridx, sidx, Lidx, Ridx; ^~~~ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized] n = L/sizeof(uint16); ~^~~~~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized] if (css) ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] { uint64 symbol = (uint64) (node->lft); ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] node[value].lft = (HTree *) (uint64) i; ^ make[1]: Leaving directory '/build/dascrubber-1.1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/dascrubber-1.1' dh_auto_install make -j10 install DESTDIR=/build/dascrubber-1.1/debian/dascrubber AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dascrubber-1.1' install -d /build/dascrubber-1.1/debian/dascrubber/usr/bin install DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim /build/dascrubber-1.1/debian/dascrubber/usr/bin make[2]: Leaving directory '/build/dascrubber-1.1' mkdir -p /build/dascrubber-1.1/debian/dascrubber/usr/share/man/man1 for command in /build/dascrubber-1.1/debian/dascrubber/usr/bin/*; \ do \ ln -s dascrubber.1 \ /build/dascrubber-1.1/debian/dascrubber/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/dascrubber-1.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dascrubber/usr/bin/DAScover debian/dascrubber/usr/bin/REPqv debian/dascrubber/usr/bin/DASmap debian/dascrubber/usr/bin/REPcover debian/dascrubber/usr/bin/DASedit debian/dascrubber/usr/bin/REPtrim debian/dascrubber/usr/bin/DASqv debian/dascrubber/usr/bin/DASpatch debian/dascrubber/usr/bin/DAStrim debian/dascrubber/usr/bin/DASrealign were not linked against libm.so.6 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dascrubber' in '../dascrubber_1.1-1_i386.deb'. dpkg-deb: building package 'dascrubber-dbgsym' in '../dascrubber-dbgsym_1.1-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dascrubber_1.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16374 and its subdirectories I: Current time: Sat Jun 22 09:24:36 -12 2019 I: pbuilder-time-stamp: 1561238676 Sat Jun 22 21:24:36 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Sat Jun 22 21:24:36 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Sat Jun 22 21:25:04 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Sat Jun 22 21:25:05 UTC 2019 I: dascrubber_1.1-1_i386.changes: Format: 1.8 Date: Sun, 28 Oct 2018 08:56:42 +0100 Source: dascrubber Binary: dascrubber dascrubber-dbgsym Architecture: i386 Version: 1.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads Changes: dascrubber (1.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Add watch file * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright * hardening=+all Checksums-Sha1: 1983c2da65684513a57e1642d4076656bb0fd0c3 1356936 dascrubber-dbgsym_1.1-1_i386.deb 5eda5e6bf011969124a01713e05a3380226ae806 4457 dascrubber_1.1-1_i386.buildinfo 355d57f0010237902926836ae5b3c21a89871a98 159292 dascrubber_1.1-1_i386.deb Checksums-Sha256: 2339dd4f45febeda634ef18c26f2d4bf4852d7520fe5a5a6ed553e48e3f6194e 1356936 dascrubber-dbgsym_1.1-1_i386.deb 050290b5c4a42c83363b3aec8aade5ecd33dc35c765038e403c6ce543b6f3f54 4457 dascrubber_1.1-1_i386.buildinfo badd18e05b6c440657c6f727343e17c9c4f30cb390e7e648ac332a41b3374f82 159292 dascrubber_1.1-1_i386.deb Files: d040273087bd2f27403a019561f8903e 1356936 debug optional dascrubber-dbgsym_1.1-1_i386.deb ee1288567edf0d954921abe22766dcfc 4457 science optional dascrubber_1.1-1_i386.buildinfo 0dc55db74cc7389382aa92c4e5750f92 159292 science optional dascrubber_1.1-1_i386.deb Sat Jun 22 21:25:06 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.P94J7wK7YB/dascrubber_1.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.P94J7wK7YB/dascrubber_1.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.P94J7wK7YB/dascrubber_1.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.P94J7wK7YB/b1/dascrubber_1.1-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.P94J7wK7YB/b2/dascrubber_1.1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.231s) 0.231s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 10 calls diffoscope.comparators.binary.FilesystemFile Sat Jun 22 21:25:07 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 22 21:25:07 UTC 2019 I: dascrubber from buster built successfully and reproducibly on i386. Sat Jun 22 21:25:09 UTC 2019 I: Submitting .buildinfo files to external archives: Sat Jun 22 21:25:09 UTC 2019 I: Submitting 8.0K b1/dascrubber_1.1-1_i386.buildinfo.asc Sat Jun 22 21:25:16 UTC 2019 I: Submitting 8.0K b2/dascrubber_1.1-1_i386.buildinfo.asc Sat Jun 22 21:25:46 UTC 2019 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Sat Jun 22 21:25:46 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 22 21:25:46 UTC 2019 I: Done submitting .buildinfo files. Sat Jun 22 21:25:46 UTC 2019 I: Removing signed dascrubber_1.1-1_i386.buildinfo.asc files: removed './b1/dascrubber_1.1-1_i386.buildinfo.asc' removed './b2/dascrubber_1.1-1_i386.buildinfo.asc'