Wed Jul 15 19:22:44 UTC 2020 I: starting to build lambda-align/buster/i386 on jenkins on '2020-07-15 19:22' Wed Jul 15 19:22:44 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/421/console.log Wed Jul 15 19:22:44 UTC 2020 I: Downloading source for buster/lambda-align=1.0.3-5 --2020-07-15 19:22:45-- http://deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2154 (2.1K) Saving to: ‘lambda-align_1.0.3-5.dsc’ 0K .. 100% 146M=0s 2020-07-15 19:22:45 (146 MB/s) - ‘lambda-align_1.0.3-5.dsc’ saved [2154/2154] Wed Jul 15 19:22:45 UTC 2020 I: lambda-align_1.0.3-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: lambda-align Binary: lambda-align Architecture: any Version: 1.0.3-5 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Michael R. Crusoe Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git Testsuite: autopkgtest Testsuite-Triggers: coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz 3d1494d05d9b636e0fe9046c4e7891666453a028 8000 lambda-align_1.0.3-5.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 5db2098646286b937e5854441123fd65b15e2c0f8741b94a8ac3f017f6968fcb 8000 lambda-align_1.0.3-5.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz 5881f150506f45b2677ce5dc7dbf0e16 8000 lambda-align_1.0.3-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxG7uoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEFjQ/+NkpLTn4rw4oFK3uIHb4gHD6kcT62h1mp 32CSwigVennEdeuLzX37/MJCwk/NXvmtZ1u/sRZVo5RM47icfNHLxsVeJQR/wilv styo6LckFCSbsg5sbXby+CP4lAs3NpprV37VZD9jSlZ8ZLmYLc24XCYrIE7vMLJZ pDAqQltcfovgcLudllDiWmoPnYxkg62QnPMWN/WVBN/VIL/rfCbsOO2j5zcJvA6N +MkE9gHWDtzaoxZBWWW5n+sZAetLqxmj/e8YGfEJBvFOBeC3sVqK+HypNNeNTR8+ w285VDN9kaTt6yebhiUA7acAS5gFsyPZFPp8FnFa9P9levcbUlgptvH2kzSl8BiW reXTqApDL9zjsFlCnabQu6N9t201kLczh+m9FxYS00zTFuQ4rC8ufqK6mxNkDmzk sUhD1Wtt/ADDeO93jgCHof8oQYjPwP5wJIQp297Dq7AVlV+89/8+sYgeq+3QWO1b 7hEwjc8l2tAS6Udfm57BSLpdgGyMdsBDyoKHzHFjZP9EdQd+dmaUHeplJeKGx7Ve 3UE/jKJivvUkzU8vpxjfo6ghTbW4ak0UJltoQi+R9/LXpQyd0czF8Gl9yJq39+t6 WZXi5nvSJB6D0GNaphrVF7EXB1nshiwyg76TdT+4iW6WYA1pKdwU7IEoKitV8QQV kF42ZFz/6iM= =IFAy -----END PGP SIGNATURE----- Wed Jul 15 19:22:45 UTC 2020 I: Checking whether the package is not for us Wed Jul 15 19:22:45 UTC 2020 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Wed Jul 15 19:22:45 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Wed Jul 15 20:56:40 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 15 07:22:46 -12 2020 I: pbuilder-time-stamp: 1594840966 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [lambda-align_1.0.3-5.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 21 22:22:34 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align_1.0.3-5.dsc dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18845/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5f85cf8bc69d492896eb2a4365454389' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18845' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/pbuilderrc_Dj8X --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/b1 --logfile b1/build.log lambda-align_1.0.3-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux profitbricks-build2-i386 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin total 5484 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 14 22:00 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/18845/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libbz2-dev{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 31.6 MB of archives. After unpacking 124 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libprocps7 i386 2:3.3.15-2 [62.7 kB] Get: 9 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 procps i386 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 14 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 15 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 17 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main i386 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libarchive13 i386 3.3.3-4+deb10u1 [351 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u2 [236 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 38 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4+deb10u1 [358 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libjsoncpp1 i386 1.7.4-3 [85.0 kB] Get: 43 http://deb.debian.org/debian buster/main i386 librhash0 i386 1.3.8-1 [135 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libuv1 i386 1.24.1-1 [116 kB] Get: 45 http://deb.debian.org/debian buster/main i386 cmake i386 3.13.4-1 [3747 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 47 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 50 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 52 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 55 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 56 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libbz2-dev i386 1.0.6-9.2~deb10u1 [31.2 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Get: 61 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u3 [853 kB] Get: 62 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 31.6 MB in 9s (3470 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../28-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../29-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../30-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../31-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../32-libsasl2-2_2.1.27+dfsg-1+deb10u1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. 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Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libprocps7:i386 (2:3.3.15-2) ... Setting up libnghttp2-14:i386 (1.36.0-2+deb10u1) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up libseqan2-dev (2.4.0+dfsg-11) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:i386 (1.24.1-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:i386 (1.3.8-1) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:i386 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libbz2-dev:i386 (1.0.6-9.2~deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:i386 (3.3.3-4+deb10u1) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:i386 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.13.4-1) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build dh build --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo .. Compiler Detection -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.2.11 BZIP2 TRUE 1.0.6 SEQAN TRUE 2.4.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. -- CMAKE_BUILD_TYPE is not "Release", your binaries will be slow. Setting up unit tests -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/lambda-align-1.0.3/build make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= Scanning dependencies of target lambda_indexer Scanning dependencies of target lambda make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Entering directory '/build/lambda-align-1.0.3/build' [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=10 -O2 -g -DNDEBUG -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/lambda-align-1.0.3/src/lambda.cpp cd /build/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"RelWithDebInfo\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=10 -O2 -g -DNDEBUG -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/lambda-align-1.0.3/src/misc.hpp:34, from /build/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] setDate(parser, __DATE__); ^~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: /build/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] setDate(parser, __DATE__); ^~~~~~~~ /build/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(cwd, 1000); ~~~~~~^~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)0, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)0]' /build/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = (seqan::BlastProgram)0; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:145:106: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)0>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' /build/lambda-align-1.0.3/src/lambda.cpp:147:107: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)0]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)1, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)1]' /build/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)1; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)2, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)2]' /build/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)2; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)3, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)3]' /build/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)3; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, (seqan::BlastProgram)4, (seqan::BlastTabularSpec)1>, seqan::Tag >]' /build/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1; seqan::BlastProgram p = (seqan::BlastProgram)4]' /build/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' /build/lambda-align-1.0.3/src/lambda.cpp:149:104: required from here /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:34: /build/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = (seqan::BlastProgram)4; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] computeEValue(bm, context(lH.gH.outfile)); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/lambda-align-1.0.3/src/output.hpp:25, from /build/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here computeEValue(TBlastMatch & match, ^~~~~~~~~~~~~ In file included from /build/lambda-align-1.0.3/src/lambda.cpp:32: /build/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(cwd, 1000); ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=10 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fno-omit-frame-pointer -fopenmp -Wno-vla -flto=10 -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/lambda-align-1.0.3/build' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --builddirectory=build dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && make -j10 install DESTDIR=/build/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/lambda-align-1.0.3 -B/build/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles /build/lambda-align-1.0.3/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/lambda-align-1.0.3/build' cd /build/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/lambda-align-1.0.3 /build/lambda-align-1.0.3/src /build/lambda-align-1.0.3/build /build/lambda-align-1.0.3/build/src /build/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' make[3]: Entering directory '/build/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/lambda-align-1.0.3/build' [100%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-5_i386.deb'. dpkg-deb: building package 'lambda-align-dbgsym' in '../lambda-align-dbgsym_1.0.3-5_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lambda-align_1.0.3-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18845 and its subdirectories I: Current time: Wed Jul 15 08:56:40 -12 2020 I: pbuilder-time-stamp: 1594846600 Wed Jul 15 20:56:41 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Wed Jul 15 20:56:41 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Wed Jul 15 20:59:40 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Wed Jul 15 20:59:41 UTC 2020 I: lambda-align_1.0.3-5_i386.changes: Format: 1.8 Date: Tue, 22 Jan 2019 11:12:44 +0100 Source: lambda-align Binary: lambda-align lambda-align-dbgsym Architecture: i386 Version: 1.0.3-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: lambda-align - Local Aligner for Massive Biological DatA Changes: lambda-align (1.0.3-5) unstable; urgency=medium . * Team upload. * Watch file reports only version 1 * Document choice of version 1 in README.Debian * debhelper 12 * CMAKE_BUILD_TYPE=RelWithDebInfo to get debug info Checksums-Sha1: e0f5b82edae85c1b308895ae6ae5fa6eaa0b952c 18763220 lambda-align-dbgsym_1.0.3-5_i386.deb f304908e9bdf06643e4ad5e8fdc1e138b7ebf198 5764 lambda-align_1.0.3-5_i386.buildinfo 76257c851a5ec6e060146deada92c7c4f4e0cd9c 1057836 lambda-align_1.0.3-5_i386.deb Checksums-Sha256: 058a04559ee1aadbe606d01789d2ef4cc826e3fab10569e0ece20f5b3cc46428 18763220 lambda-align-dbgsym_1.0.3-5_i386.deb 898aef7ad0d545f674df05b02ecd3bc49698601fab79658953b367debe2bddc9 5764 lambda-align_1.0.3-5_i386.buildinfo fb41d2bebf7978962ebd6f98de6b39f5071e6ef6054d0f10b81eacda10fcdca1 1057836 lambda-align_1.0.3-5_i386.deb Files: face7979da08189d495f17aca1aaa4b0 18763220 debug optional lambda-align-dbgsym_1.0.3-5_i386.deb 6f080173dcef1a2450a9ada1bbc3e966 5764 science optional lambda-align_1.0.3-5_i386.buildinfo 354c68466f923768205d05181240a195 1057836 science optional lambda-align_1.0.3-5_i386.deb Wed Jul 15 20:59:51 UTC 2020 I: diffoscope 151 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/lambda-align_1.0.3-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/lambda-align_1.0.3-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/lambda-align_1.0.3-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/b1/lambda-align_1.0.3-5_i386.changes /srv/reproducible-results/rbuild-debian/tmp.bO2Wc1qRsc/b2/lambda-align_1.0.3-5_i386.changes ## close_archive (total time: 0.001s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## command (total time: 1768.219s) 853.752s 2360 calls readelf 701.905s 303 calls diff 193.735s 440 calls objdump 8.958s 4 calls objcopy 8.872s 20 calls xz 0.876s 55 calls strings 0.121s 11 calls cmp 0.001s 14 calls cmp (internal) ## compare_files (cumulative) (total time: 5557.035s) 1032.498s 1 call abc.DotChangesFile 1032.227s 2 calls abc.DebFile 1031.852s 4 calls abc.XzFile 1028.382s 2 calls abc.DebDataTarFile 1025.891s 5 calls abc.ElfFile 386.210s 20 calls diffoscope.comparators.elf.ElfCodeSection 10.932s 75 calls diffoscope.comparators.elf.ElfSection 8.659s 5 calls diffoscope.comparators.elf.ElfStringSection 0.239s 2 calls abc.TarFile 0.081s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.033s 1 call abc.TextFile 0.031s 2 calls abc.Md5sumsFile ## container_extract (total time: 9.843s) 8.875s 20 calls diffoscope.comparators.xz.XzContainer 0.603s 26 calls diffoscope.comparators.deb.DebTarContainer 0.355s 24 calls diffoscope.comparators.deb.DebContainer 0.010s 16 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.128s) 0.059s 5 calls abc.ElfFile 0.024s 4 calls abc.XzFile 0.023s 2 calls abc.DebFile 0.017s 2 calls abc.DebDataTarFile 0.002s 75 calls diffoscope.comparators.elf.ElfSection 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.TarFile 0.000s 20 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 5 calls diffoscope.comparators.elf.ElfStringSection 0.000s 2 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 1034.520s) 1034.316s 2 calls outputs 0.204s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 8 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 1.361s) 1.192s 1 call html 0.104s 1 call text 0.065s 1 call json ## recognizes (total time: 8.910s) 5.915s 696 calls diffoscope.comparators.utils.archive.ArchiveMember 1.259s 1350 calls diffoscope.comparators.elf.ElfSection 0.963s 1676 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.384s 360 calls diffoscope.comparators.elf.ElfCodeSection 0.229s 10 calls diffoscope.comparators.binary.FilesystemFile 0.080s 168 calls diffoscope.comparators.debian.DebControlMember 0.077s 90 calls diffoscope.comparators.elf.ElfStringSection 0.003s 36 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.001s 28 calls abc.Md5sumsFile 0.000s 8 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink Wed Jul 15 21:17:24 UTC 2020 E: lambda-align failed to build reproducibly in buster on i386. Wed Jul 15 21:17:27 UTC 2020 I: Submitting .buildinfo files to external archives: Wed Jul 15 21:17:27 UTC 2020 I: Submitting 8.0K b1/lambda-align_1.0.3-5_i386.buildinfo.asc Wed Jul 15 21:17:28 UTC 2020 I: Submitting 8.0K b2/lambda-align_1.0.3-5_i386.buildinfo.asc Wed Jul 15 21:17:29 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 15 21:17:29 UTC 2020 I: Done submitting .buildinfo files. Wed Jul 15 21:17:29 UTC 2020 I: Removing signed lambda-align_1.0.3-5_i386.buildinfo.asc files: removed './b1/lambda-align_1.0.3-5_i386.buildinfo.asc' removed './b2/lambda-align_1.0.3-5_i386.buildinfo.asc'