Mon Aug 17 09:20:26 UTC 2020 I: starting to build libbio-samtools-perl/buster/i386 on jenkins on '2020-08-17 09:20' Mon Aug 17 09:20:26 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/6853/console.log Mon Aug 17 09:20:26 UTC 2020 I: Downloading source for buster/libbio-samtools-perl=1.43-2 --2020-08-17 09:20:26-- http://deb.debian.org/debian/pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) Saving to: ‘libbio-samtools-perl_1.43-2.dsc’ 0K .. 100% 20.0M=0s 2020-08-17 09:20:26 (20.0 MB/s) - ‘libbio-samtools-perl_1.43-2.dsc’ saved [2192/2192] Mon Aug 17 09:20:26 UTC 2020 I: libbio-samtools-perl_1.43-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-2 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 9475614f4f0de7f6576914918c7b414bd6ced74a 8256 libbio-samtools-perl_1.43-2.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz 9ea5e3a69a64bb71f2a8ddeba32b15a1d930e47d9bc440c288b560d73ebd3b55 8256 libbio-samtools-perl_1.43-2.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz a495405e39767ff66925faf7e9231558 8256 libbio-samtools-perl_1.43-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxZdukRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHrFA/+MjgTD4ELAGybLClrtuvYNS09Nos0Dk6q n5z2G4M/T9k7Xdr/L8atd6eAZXmujGX9YdIShdNsHKvHaXvCBx16xGHzh/bI6dFO L5mQxlIAqO8WTRyj6W90ZyzaP+wcQxbyJRouldLku9UYdAPSbn188cpLJHNGaAvg 0Hbq3QqJ1eShWV/BxZ1tJmXkHfLy86X4qA9/03EcqtKkdJclS1ykWPTIzsdfNgg/ McfHfo3gEbdQpqt6ClqNyuK1CY58WlhBzpzgYjCUpGDBryITro2hQf7id0eTBFGC qXEHhwsnos5/VQ6kFCSVI+ymRwo7M8kLCtnCs21J5n3sYiBySm1vwCP61yWrje3h iHXtHVfsPS4W7+jwfawXchG0iilqN164Pxk3S2Ob9z3G/gwmysCXmf8mGiaS+m+V Y7ZBTkpwSEHJSDP4fYJ8A1ky0TkbDEVQ55gQbPmWwx/SlFOkOl5HkD9ogqf6coED rc3nkMpF3GQUBrxyGVXYXgkNMTi+z2B0APIni+hZhpO1LYK5tcNF6O6gxCgxsIvV h2hFcYSz7NrSJhwetQ0LSDOhO84WEmKHML9aJMY+7X2/3UfrkEf3y/vyqAlwH0fR I/v5IL5SLJPHFqjbDF6jO/6KYbHME/fSV9awjmNZwqGbJQUYg5MKFJlgu4JuRjnn dLeHnPVn0nI= =tgdc -----END PGP SIGNATURE----- Mon Aug 17 09:20:26 UTC 2020 I: Checking whether the package is not for us Mon Aug 17 09:20:26 UTC 2020 I: Starting 1st build on remote node profitbricks-build16-i386.debian.net. Mon Aug 17 09:20:26 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build16-i386.debian.net. Mon Aug 17 09:20:50 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 19 03:43:27 -12 2021 I: pbuilder-time-stamp: 1632066207 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbio-samtools-perl_1.43-2.dsc] I: copying [./libbio-samtools-perl_1.43.orig.tar.gz] I: copying [./libbio-samtools-perl_1.43-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 4 23:43:37 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-samtools-perl_1.43-2.dsc dpkg-source: info: extracting libbio-samtools-perl in libbio-samtools-perl-1.43 dpkg-source: info: unpacking libbio-samtools-perl_1.43.orig.tar.gz dpkg-source: info: unpacking libbio-samtools-perl_1.43-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28341/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='61f2b01e442f47dba8fbc93342fe522a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28341' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/pbuilderrc_y3J9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/b1 --logfile b1/build.log libbio-samtools-perl_1.43-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux profitbricks-build16-i386 4.19.0-10-amd64 #1 SMP Debian 4.19.132-1 (2020-07-24) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 18 02:48 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/28341/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), perl, libmodule-build-perl, zlib1g-dev, libbam-dev, libbio-perl-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libbio-perl-perl{a} libbsd0{a} libcroco3{a} libdata-stag-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libio-string-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libglib2.0-data libgpm2 libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 25.0 MB of archives. After unpacking 87.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libbam-dev i386 0.1.19-4 [136 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libio-string-perl all 1.08-3 [12.3 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libdata-stag-perl all 0.14-2 [448 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libbio-perl-perl all 1.7.2-3 [4553 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libmodule-build-perl all 0.422400-1 [259 kB] Get: 39 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 25.0 MB in 0s (85.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../33-libbam-dev_0.1.19-4_i386.deb ... Unpacking libbam-dev (0.1.19-4) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../34-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../35-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../36-libbio-perl-perl_1.7.2-3_all.deb ... Unpacking libbio-perl-perl (1.7.2-3) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../37-libmodule-build-perl_0.422400-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.422400-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../38-zlib1g-dev_1%3a1.2.11.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up libmodule-build-perl (0.422400-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libbam-dev (0.1.19-4) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbio-samtools-perl-1.43/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libbio-samtools-perl-1.43' SAMTOOLS=/usr/include/samtools dh_auto_configure perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Found /usr/include/samtools/bam.h and /usr/lib/libbam.a. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/build/libbio-samtools-perl-1.43' dh_auto_build perl Build Building Bio-SamTools i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.28/CORE -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c i686-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/i386-linux-gnu/perl/5.28/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c lib/Bio/DB/Sam.xs: In function 'XS_Bio__DB__Bam_sort_core': lib/Bio/DB/Sam.xs:324:4: warning: implicit declaration of function 'bam_sort_core'; did you mean 'bam_format1_core'? [-Wimplicit-function-declaration] bam_sort_core(is_by_qname,filename,prefix,max_mem); ^~~~~~~~~~~~~ bam_format1_core lib/Bio/DB/Sam.xs: In function 'XS_Bio__DB__Bam__Header_view1': lib/Bio/DB/Sam.xs:916:8: warning: implicit declaration of function 'bam_view1'; did you mean 'bam_dup1'? [-Wimplicit-function-declaration] bam_view1(bamh,alignment); ^~~~~~~~~ bam_dup1 ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-samtools-perl-1.43=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L/usr/lib -lbam -lpthread -lz make[1]: Entering directory '/build/libbio-samtools-perl-1.43/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -L/usr/lib -lbam -lpthread -lm -lz make[1]: Leaving directory '/build/libbio-samtools-perl-1.43/c_bin' dh_auto_test perl Build test --verbose 1 make[1]: Entering directory '/build/libbio-samtools-perl-1.43/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/build/libbio-samtools-perl-1.43/c_bin' [fai_load] build FASTA index. [bam_parse_region] fail to determine the sequence name. t/01sam.t .. 1..268 # Running under perl version 5.028001 for linux # Current time local: Sun Sep 19 03:43:45 2021 # Current time GMT: Sun Sep 19 15:43:45 2021 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok All tests successful. Files=1, Tests=268, 1 wallclock secs ( 0.04 usr 0.00 sys + 0.64 cusr 0.08 csys = 0.76 CPU) Result: PASS create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install perl Build install --destdir /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/build/libbio-samtools-perl-1.43/c_bin' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/build/libbio-samtools-perl-1.43/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.bs Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/auto/Bio/DB/Sam/Sam.so Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bam2bedgraph Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Target.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/PileupWrapper.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Alignment.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Pileup.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/FetchIterator.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/Query.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/ReadIterator.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Bam/AlignWrapper.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Segment.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/Constants.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/lib/i386-linux-gnu/perl5/5.28/Bio/DB/Sam/SamToGBrowse.pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /build/libbio-samtools-perl-1.43/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libbio-samtools-perl/usr/bin/bam2bedgraph was not linked against libm.so.6 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-2_i386.deb'. dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.43-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbio-samtools-perl_1.43-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28341 and its subdirectories I: Current time: Sun Sep 19 03:43:49 -12 2021 I: pbuilder-time-stamp: 1632066229 Mon Aug 17 09:20:50 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Mon Aug 17 09:20:50 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Mon Aug 17 09:24:40 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Mon Aug 17 09:24:40 UTC 2020 I: libbio-samtools-perl_1.43-2_i386.changes: Format: 1.8 Date: Tue, 05 Feb 2019 11:59:42 +0100 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: i386 Version: 1.43-2 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Changes: libbio-samtools-perl (1.43-2) unstable; urgency=medium . * Team upload. . [ gregor herrmann ] * debian/copyright: change Copyright-Format 1.0 URL to HTTPS. * Remove Nathan Handler from Uploaders. Thanks for your work! . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . [ gregor herrmann ] * debian/*: update URLs from {search,www}.cpan.org to MetaCPAN. . [ Laurent Baillet ] * fix lintian file-contains-trailing-whitespace warning . [ Andreas Tille ] * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * Lintian-override for script-with-language-extension since this is agreement in Debian Med team Checksums-Sha1: 2be07c9c700f39332024648f840057f00a659845 85596 libbio-samtools-perl-dbgsym_1.43-2_i386.deb af632159b191f6227488f55e21f48975aeeca554 4898 libbio-samtools-perl_1.43-2_i386.buildinfo ca96e78816f121e1c9dfa5f5e5d499fc1d12619f 210380 libbio-samtools-perl_1.43-2_i386.deb Checksums-Sha256: 52f754255c353a9d373dec9181ea6f83469e1f426229ae49fd9a5d72c6ec9c24 85596 libbio-samtools-perl-dbgsym_1.43-2_i386.deb 6fd353460ff824f3c2bb3f84c95f7d410e999190dd74d71eadce298c2e753373 4898 libbio-samtools-perl_1.43-2_i386.buildinfo f1147317ba77beac7fa375811e3b0ce873718215f4fa8da503d67b8386141b56 210380 libbio-samtools-perl_1.43-2_i386.deb Files: 25085f80f030afce0329c06fa49047ae 85596 debug optional libbio-samtools-perl-dbgsym_1.43-2_i386.deb 517657fba22231a5cc55071efd9abee1 4898 perl optional libbio-samtools-perl_1.43-2_i386.buildinfo 883bf2d6bd1b1ad6ba87fb4aee0104c2 210380 perl optional libbio-samtools-perl_1.43-2_i386.deb Mon Aug 17 09:24:41 UTC 2020 I: diffoscope 156 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/libbio-samtools-perl_1.43-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/libbio-samtools-perl_1.43-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/libbio-samtools-perl_1.43-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/b1/libbio-samtools-perl_1.43-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.Hbr9S1CVaJ/b2/libbio-samtools-perl_1.43-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.289s) 0.289s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Aug 17 09:24:42 UTC 2020 I: diffoscope 156 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 17 09:24:42 UTC 2020 I: libbio-samtools-perl from buster built successfully and reproducibly on i386. Mon Aug 17 09:24:43 UTC 2020 I: Submitting .buildinfo files to external archives: Mon Aug 17 09:24:43 UTC 2020 I: Submitting 8.0K b1/libbio-samtools-perl_1.43-2_i386.buildinfo.asc Mon Aug 17 09:24:45 UTC 2020 I: Submitting 8.0K b2/libbio-samtools-perl_1.43-2_i386.buildinfo.asc Mon Aug 17 09:24:45 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 17 09:24:45 UTC 2020 I: Done submitting .buildinfo files. Mon Aug 17 09:24:45 UTC 2020 I: Removing signed libbio-samtools-perl_1.43-2_i386.buildinfo.asc files: removed './b1/libbio-samtools-perl_1.43-2_i386.buildinfo.asc' removed './b2/libbio-samtools-perl_1.43-2_i386.buildinfo.asc'