Thu Sep 24 13:14:54 UTC 2020 I: starting to build libccp4/buster/i386 on jenkins on '2020-09-24 13:14' Thu Sep 24 13:14:54 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/9749/console.log Thu Sep 24 13:14:54 UTC 2020 I: Downloading source for buster/libccp4=6.5.1-1 --2020-09-24 13:14:54-- http://deb.debian.org/debian/pool/main/libc/libccp4/libccp4_6.5.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2288 (2.2K) Saving to: ‘libccp4_6.5.1-1.dsc’ 0K .. 100% 3.33M=0.001s 2020-09-24 13:14:54 (3.33 MB/s) - ‘libccp4_6.5.1-1.dsc’ saved [2288/2288] Thu Sep 24 13:14:54 UTC 2020 I: libccp4_6.5.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libccp4 Binary: libccp4c0, libccp4-dev, libccp4f0, libccp4-data Architecture: any all Version: 6.5.1-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Andrius Merkys Homepage: http://www.ccp4.ac.uk/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/science-team/libccp4 Vcs-Git: https://salsa.debian.org/science-team/libccp4.git Build-Depends: debhelper (>= 11), gfortran, libmmdb2-dev, m4 Package-List: libccp4-data deb libdevel optional arch=all libccp4-dev deb libdevel optional arch=any libccp4c0 deb libs optional arch=any libccp4f0 deb libs optional arch=any Checksums-Sha1: 7368188b5eab23d6fc28821d851e217b544492db 947521 libccp4_6.5.1.orig.tar.gz 37de1d948132306bce00800957f61f243a4b6e4c 3880 libccp4_6.5.1-1.debian.tar.xz Checksums-Sha256: 280b473d950cdf8837ef66147ec581104298b892399bd856f13b096f2395dbe5 947521 libccp4_6.5.1.orig.tar.gz d97f63243d2913ead58ef155e9ea0400b45ee18bdc6663d1e885c5c499de77a9 3880 libccp4_6.5.1-1.debian.tar.xz Files: ac145e52039546c1751b69db9b216c33 947521 libccp4_6.5.1.orig.tar.gz 5e775c2f5d5334e85b54393c1feba409 3880 libccp4_6.5.1-1.debian.tar.xz Dgit: 205f1a2a83127f745a63eb660067f572b5b916c2 debian archive/debian/6.5.1-1 https://git.dgit.debian.org/libccp4 -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE2bRTt5m4gw2UXmoKW/VOXhK5ALsFAlruxDARHHBpY2NhQGRl Ymlhbi5vcmcACgkQW/VOXhK5ALsX1A//a6FxXZPtQg2fqMS1FpF3jE2wORnSjL+C zaPpadtNQ9C+Z74L+K4naNPQSGjEeo/0HUZWARLs3ACARstR9CsX9QIgz/hz3fJR VcmfdjYC+y6EO5vIHDO/tSg44LukD6POZRKSb3H+Md3ICCyk11wjdNBP0RnkkT5i 3CLLHoKcCNT8QRN8Glb1bwYUszYn+KpNZgUSUeiHwdkK5r14Odmd0PvJnRjwpM4a +bGu3+6bbvNeZEQywjO7g6tMhlxPowuYrhMVPbL59GT8DYy++idAs0hoIBJmZUAs 3E6BJN2LKyV7DJQwRF57aG8Pu5AG++IqHeWHziReKKgGW/VidvJKF9Kuzb0cqgto DJb+okxBCZdVf71tNeAC9SKi1Z+xkGjKpYu5TDN7Yz/5pY70c7OpLqeagtAGBJQx vSl+LZYykYMYkbf8LCiwVGnUSsK/KiP7skmBzE9QUaMPpI4HfnyzS6vwpRm3pbw5 /zQmmsXj09D8URA4XNn04ZKBZaN/XTHYZJtKdFuWtkyLPbCFERMGrjno3h56N9Ew AkOEAJXc0wZjdI0sp+iMuQm4We8lsCaOICbxs+A/eXaW9r6bpiHOgWzDHvaklLjg qpfmFgePHnhJg02N8WyHoBG0ZPCr2C0QlkI7KoSsasZCbFPRYEzBqRhalHjKP5FG fpwlQGQJQfk= =QSSo -----END PGP SIGNATURE----- Thu Sep 24 13:14:54 UTC 2020 I: Checking whether the package is not for us Thu Sep 24 13:14:54 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Thu Sep 24 13:14:54 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Thu Sep 24 13:20:41 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 24 01:14:56 -12 2020 I: pbuilder-time-stamp: 1600953296 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libccp4_6.5.1-1.dsc] I: copying [./libccp4_6.5.1.orig.tar.gz] I: copying [./libccp4_6.5.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat May 5 21:00:32 2018 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libccp4_6.5.1-1.dsc dpkg-source: info: extracting libccp4 in libccp4-6.5.1 dpkg-source: info: unpacking libccp4_6.5.1.orig.tar.gz dpkg-source: info: unpacking libccp4_6.5.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-use-mmdb2-instead-of-mmdb-in-libccp4f.pc.in.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5036/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c7c479b872e34e7ca450631be295e747' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5036' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/pbuilderrc_LQKy --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/b1 --logfile b1/build.log libccp4_6.5.1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux profitbricks-build12-i386 4.19.0-10-686-pae #1 SMP Debian 4.19.132-1 (2020-07-24) i686 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 20 20:25 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/5036/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), gfortran, libmmdb2-dev, m4 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on m4; however: Package m4 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 30.4 MB of archives. After unpacking 107 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 36 http://deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 37 http://deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Get: 38 http://deb.debian.org/debian buster/main i386 libmmdb2-0 i386 2.0.5-1 [359 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libmmdb2-dev i386 2.0.5-1 [91.9 kB] Fetched 30.4 MB in 10s (2992 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... 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Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libccp4-6.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libccp4 dpkg-buildpackage: info: source version 6.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libccp4-6.5.1' dh_auto_configure -- --disable-static --enable-shared --datadir=/usr/share/ccp4 ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-static --enable-shared --datadir=/usr/share/ccp4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for m4... /usr/bin/m4 configure: fortran/unix.m4 will be processed with m4 -D_gfort=1 checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libccp4c.pc config.status: creating libccp4f.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_build make -j10 make[1]: Entering directory '/build/libccp4-6.5.1' m4 -D_gfort=1 fortran/unix.m4 > fortran/unix.f make all-am make[2]: Entering directory '/build/libccp4-6.5.1' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/csymlib.c -fPIC -DPIC -o ccp4/.libs/csymlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_data.c -fPIC -DPIC -o ccp4/.libs/cmap_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_array.c -fPIC -DPIC -o ccp4/.libs/ccp4_array.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_program.c -fPIC -DPIC -o ccp4/.libs/ccp4_program.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_parser.c -fPIC -DPIC -o ccp4/.libs/ccp4_parser.o ccp4/ccp4_program.c: In function 'ccp4_vers_no': ccp4/ccp4_program.c:68:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(ccp4version,MAXLEN_PROGVERSION,cfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o ccp4/library_err.c: In function 'CFile_Perror': ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (msg == NULL || msg == '\0') colon = ""; ^~ ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? if (msg == NULL || msg == '\0') colon = ""; ^ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c: In function 'ccpfyp_': fortran/ccp4_general_f.c:88:23: warning: implicit declaration of function 'outbuf_'; did you mean 'setbuf'? [-Wimplicit-function-declaration] FORTRAN_CALL(OUTBUF,outbuf,(),(),()); ^~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:114:5: warning: implicit declaration of function '_gfortran_getarg_i4'; did you mean '_gfortran_getarg'? [-Wimplicit-function-declaration] _gfortran_getarg_i4(&i,arg,arg_len); ^~~~~~~~~~~~~~~~~~~ _gfortran_getarg In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c:145:29: warning: implicit declaration of function 'ccp4h_init_'; did you mean 'ccp4printf'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_INIT, ccp4h_init, (), (), ()); ^~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c: In function 'ccperr_': fortran/ccp4_general_f.c:218:37: warning: implicit declaration of function 'ccp4_fflush_stdout_'; did you mean 'ccp4_file_status'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4_FFLUSH_STDOUT, ccp4_fflush_stdout, (), (), ()); ^~~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:222:38: warning: implicit declaration of function 'ccp4h_summary_beg_' [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_SUMMARY_BEG, ccp4h_summary_beg, (), (), ()); ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:230:38: warning: implicit declaration of function 'ccp4h_summary_end_'; did you mean 'ccp4_parse_end'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_SUMMARY_END, ccp4h_summary_end, (), (), ()); ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c: In function 'ccpvrs_': fortran/ccp4_general_f.c:376:32: warning: implicit declaration of function 'ccp4h_pre_beg_'; did you mean 'ccp4_prog_vers'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_PRE_BEG, ccp4h_pre_beg, (), (), ()); ^~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c In file included from fortran/cmtzlib_f.c:70: fortran/cmtzlib_f.c: In function 'mtzini_': fortran/cmtzlib_f.c:152:33: warning: implicit declaration of function 'ccp4h_init_lib_' [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_INIT_LIB, ccp4h_init_lib, (&ihtml,&isumm), (&ihtml,&isumm), (&ihtml,&isumm)); ^~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/cmtzlib_f.c: In function 'lrhist_': fortran/cmtzlib_f.c:277:43: warning: passing argument 2 of 'ccp4_lrhist' from incompatible pointer type [-Wincompatible-pointer-types] *nlines = ccp4_lrhist(mtzdata[*mindx-1], hstrng, *nlines); ^~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:668:38: note: expected 'char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} int ccp4_lrhist(const MTZ *mtz, char history[][MTZRECORDLENGTH], int nlines); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyin_': fortran/cmtzlib_f.c:632:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_label_in[*mindx-1]) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyout_': fortran/cmtzlib_f.c:686:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgo,user_label_out[*mindx-1]) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyset_': fortran/cmtzlib_f.c:731:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c:731:45: warning: passing argument 4 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) ^~~~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:739:28: note: expected 'char (*)[2][31]' but argument is of type 'char *' const int nlprgi, char user_labels[][2][31]); ~~~~~^~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrassn_': fortran/cmtzlib_f.c:830:44: warning: passing argument 2 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:754:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:830:58: warning: passing argument 4 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:754:10: note: expected 'char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrreff_': fortran/cmtzlib_f.c:1210:23: warning: passing argument 5 of 'ccp4_lrreff' from incompatible pointer type [-Wincompatible-pointer-types] collookup[mindex-1], ndatmss[mindex-1], irref[mindex-1]); ~~~~~~~~~^~~~~~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:808:17: note: expected 'const MTZCOL **' {aka 'const struct **'} but argument is of type 'MTZCOL **' {aka 'struct **'} const MTZCOL *lookup[], const int ncols, const int iref); ~~~~~~~~~~~~~~^~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhist_': fortran/cmtzlib_f.c:1807:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] MtzAddHistory(mtzdata[*mindx-1], hstrng, *nlines); ^~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhstl_': fortran/cmtzlib_f.c:1859:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] MtzAddHistory(mtzdata[*mindx-1], hline, 1); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'char *' int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwassn_': fortran/cmtzlib_f.c:2432:46: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:2432:60: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwclab_': fortran/cmtzlib_f.c:2510:44: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:2510:58: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/ccplib.lo fortran/ccplib.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/fftlib.lo fortran/fftlib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/modlib.lo fortran/modlib.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/parser.lo fortran/parser.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/rwbrook.lo fortran/rwbrook.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/libhtml.lo fortran/libhtml.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/keyparse.lo fortran/keyparse.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/parser.f -fPIC -o fortran/.libs/parser.o fortran/modlib.f:1386:18: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1386:18: A(I,J) = A(J,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:16: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1388:16: ALPHA(J) = A(J,J) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:25: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1388:25: ALPHA(J) = A(J,J) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1441:20: DO 120 I = 2,M 2 H = ALPHA(I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:16: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1442:16: ALPHA(I) = A(I,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:25: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1442:25: ALPHA(I) = A(I,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1443:14: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1443:14: A(I,I) = H 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/dna_output.lo fortran/dna_output.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2721:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] sprintf(hdrrec,"SYMM %74s",symline); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2815:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~ ccp4/cmtzlib.c:2815:20: note: directive argument in the range [0, 2147483647] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2817:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~ ccp4/cmtzlib.c:2817:20: note: directive argument in the range [0, 2147483647] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/pack_f.lo fortran/pack_f.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/pxxml.lo fortran/pxxml.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/lgglib.lo fortran/lgglib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/pack_f.f -fPIC -o fortran/.libs/pack_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/plot84lib.lo fortran/plot84lib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/lgglib.f -fPIC -o fortran/.libs/lgglib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/plotsubs.lo fortran/plotsubs.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/pxxml.f -fPIC -o fortran/.libs/pxxml.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/sorting_main.lo fortran/sorting_main.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/unix.lo fortran/unix.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/i386-linux-gnu ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm fortran/lgglib.f:1239:72: CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) 1 Warning: More actual than formal arguments in procedure call at (1) fortran/lgglib.f:1277:72: CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) 1 Warning: More actual than formal arguments in procedure call at (1) fortran/lgglib.f:1315:72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1369:72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1429:72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1489:72: 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1546:72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1598:72: 1 SEQ(NATM), RES(NATM), ATOM(NATM) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:2424:10: do j = 1, 4 2 rt(j,4) = gt(4,j) 1 Warning: Array reference at (1) out of bounds (4 > 3) in loop beginning at (2) libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/unix.f -fPIC -o fortran/.libs/unix.o libtool: link: gcc -shared -fPIC -DPIC ccp4/.libs/ccp4_array.o ccp4/.libs/cmap_data.o ccp4/.libs/cmtzlib.o ccp4/.libs/ccp4_general.o ccp4/.libs/cmap_header.o ccp4/.libs/csymlib.o ccp4/.libs/ccp4_parser.o ccp4/.libs/cmap_labels.o ccp4/.libs/cvecmat.o ccp4/.libs/ccp4_program.o ccp4/.libs/cmap_open.o ccp4/.libs/library_err.o ccp4/.libs/ccp4_unitcell.o ccp4/.libs/cmap_skew.o ccp4/.libs/library_file.o ccp4/.libs/cmap_accessor.o ccp4/.libs/cmap_stats.o ccp4/.libs/library_utils.o ccp4/.libs/cmap_close.o ccp4/.libs/cmap_symop.o ccp4/.libs/pack_c.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4c.so.0 -o ccp4/.libs/libccp4c.so.0.0.0 fortran/plot84lib.f:8301:22: CALL AXIS(X,Y,HTEXT,NCHAR,AXLEN,ANGLE,FVAL,DV) 1 Warning: Rank mismatch in argument 'label' at (1) (scalar and rank-1) [-Wargument-mismatch] fortran/plot84lib.f:10427:19: CALL TRIPLOT(ICLEAR,1) 1 Warning: Rank mismatch in argument 'line' at (1) (rank-1 and scalar) [-Wargument-mismatch] libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so.0" && ln -s "libccp4c.so.0.0.0" "libccp4c.so.0") libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so" && ln -s "libccp4c.so.0.0.0" "libccp4c.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libccp4c.la" && ln -s "../libccp4c.la" "libccp4c.la" ) /bin/bash ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm libtool: link: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -Wl,-rpath -Wl,/build/libccp4-6.5.1/ccp4/.libs ccp4/.libs/libccp4c.so -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so.0" && ln -s "libccp4f.so.0.0.0" "libccp4f.so.0") libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so" && ln -s "libccp4f.so.0.0.0" "libccp4f.so") libtool: link: ( cd "fortran/.libs" && rm -f "libccp4f.la" && ln -s "../libccp4f.la" "libccp4f.la" ) make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/libccp4-6.5.1' make check-am make[2]: Entering directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libccp4-6.5.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libccp4-6.5.1' make install-am make[2]: Entering directory '/build/libccp4-6.5.1' make[3]: Entering directory '/build/libccp4-6.5.1' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.so.0.0.0 /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4c.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so.0 || { rm -f libccp4c.so.0 && ln -s libccp4c.so.0.0.0 libccp4c.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so || { rm -f libccp4c.so && ln -s libccp4c.so.0.0.0 libccp4c.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4c.la libtool: warning: relinking 'fortran/libccp4f.la' libtool: install: (cd /build/libccp4-6.5.1; /bin/bash "/build/libccp4-6.5.1/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/i386-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-6.5.1/debian/tmp) libtool: relink: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -L/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lccp4c -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.so.0.0.0T /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4f.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so.0 || { rm -f libccp4f.so.0 && ln -s libccp4f.so.0.0.0 libccp4f.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so || { rm -f libccp4f.so && ln -s libccp4f.so.0.0.0 libccp4f.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/libccp4f.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_file_err.h ccp4/ccp4_program.h ccp4/ccp4_unitcell.h ccp4/cmap_errno.h ccp4/cmap_stats.h ccp4/csymlib.h ccp4/library_file.h ccp4/w32mvs.h ccp4/ccp4_fortran.h ccp4/ccp4_spg.h ccp4/ccp4_utils.h ccp4/cmap_header.h ccp4/cmaplib.h ccp4/cvecmat.h ccp4/mtzdata.h ccp4/ccp4_array.h ccp4/ccp4_general.h ccp4/ccp4_sysdep.h ccp4/ccp4_vars.h ccp4/cmap_labels.h ccp4/cmaplib_f.h ccp4/overview.h ccp4/ccp4_errno.h ccp4/ccp4_parser.h ccp4/ccp4_types.h ccp4/cmap_data.h ccp4/cmap_skew.h ccp4/cmtzlib.h ccp4/pack_c.h '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 ccp4-config.cmake '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 data/atomsf_neutron.lib data/atomsf_electron.lib data/atomsf.lib data/syminfo.lib data/symop.lib data/font84.ascii '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libccp4c.pc libccp4f.pc '/build/libccp4-6.5.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' debian/rules override_dh_install make[1]: Entering directory '/build/libccp4-6.5.1' # libccp4-data dh_install -p libccp4-data usr/share # libccp4-dev dh_install -p libccp4-dev usr/include/* dh_install -p libccp4-dev usr/lib/*/lib*.so dh_install -p libccp4-dev usr/lib/*/pkgconfig # libccp4c0 dh_install -p libccp4c0 usr/lib/*/libccp4c*.so.* # libccp4f0 dh_install -p libccp4f0 usr/lib/*/libccp4f*.so.* make[1]: Leaving directory '/build/libccp4-6.5.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing debian/rules override_dh_strip make[1]: Entering directory '/build/libccp4-6.5.1' dh_strip -plibccp4c0 --dbgsym-migration='libccp4c0-dbg (<< 6.5.1-1~)' dh_strip -plibccp4f0 --dbgsym-migration='libccp4f0-dbg (<< 6.5.1-1~)' dh_strip -a -Nlibccp4c0 -Nlibccp4f0 make[1]: Leaving directory '/build/libccp4-6.5.1' dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libccp4f0/usr/lib/i386-linux-gnu/libccp4f.so.0.0.0 was not linked against libquadmath.so.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libccp4f0-dbgsym' in '../libccp4f0-dbgsym_6.5.1-1_i386.deb'. dpkg-deb: building package 'libccp4-data' in '../libccp4-data_6.5.1-1_all.deb'. dpkg-deb: building package 'libccp4c0' in '../libccp4c0_6.5.1-1_i386.deb'. dpkg-deb: building package 'libccp4-dev' in '../libccp4-dev_6.5.1-1_i386.deb'. dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_6.5.1-1_i386.deb'. dpkg-deb: building package 'libccp4f0' in '../libccp4f0_6.5.1-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libccp4_6.5.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5036 and its subdirectories I: Current time: Thu Sep 24 01:20:41 -12 2020 I: pbuilder-time-stamp: 1600953641 Thu Sep 24 13:20:42 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Thu Sep 24 13:20:42 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Thu Sep 24 13:23:28 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Thu Sep 24 13:23:28 UTC 2020 I: libccp4_6.5.1-1_i386.changes: Format: 1.8 Date: Thu, 03 May 2018 03:31:15 -0400 Source: libccp4 Binary: libccp4-data libccp4-dev libccp4c0 libccp4c0-dbgsym libccp4f0 libccp4f0-dbgsym Architecture: all i386 Version: 6.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libccp4-data - CCP4 core functionality - common files libccp4-dev - CCP4 core functionality - development files libccp4c0 - CCP4 core functionality - C runtime libccp4f0 - CCP4 core functionality - fortran runtime Changes: libccp4 (6.5.1-1) unstable; urgency=medium . * Upload to unstable. * debian/copyright - Added entry for the rest of the files. - HTTP -> HTTPS * debian/compat: bump to 11 * debian/control - Removed useless dependency on dh-autoreconf - Bump Standards-Version 4.1.4 (nothing to do) - Migrated debug symbols package * debian/watch: turning on passive FTP mode Checksums-Sha1: 2105a2c3efc77c8d766a8412bf8e244ea73cb57a 61308 libccp4-data_6.5.1-1_all.deb 5db9a89e3f2dd3994736d7dcd11eea9f7b89450e 42380 libccp4-dev_6.5.1-1_i386.deb c166cb9dcdf455395b1cc460279550175d6e20bd 5818 libccp4_6.5.1-1_i386.buildinfo 5ff9b41419b9ad65fb11ab71e8e1efb8e3d2abe9 197364 libccp4c0-dbgsym_6.5.1-1_i386.deb 3d246ee86f147d7bc924e023980d8c1459835ca2 94524 libccp4c0_6.5.1-1_i386.deb b072ed0b01a4c49c28a9a9585ea211b082323826 296084 libccp4f0-dbgsym_6.5.1-1_i386.deb b9bbd410c40a489395da6e6ff14f310fb12224c9 232800 libccp4f0_6.5.1-1_i386.deb Checksums-Sha256: 919a1728cd73c60417d0a042c3dece25b0dceda4d2f56fb7eb1d231daec53a0d 61308 libccp4-data_6.5.1-1_all.deb 49a0d12fa90f00323e79c0f2ebba361529b6775910c3d283427cdff246ff1fb4 42380 libccp4-dev_6.5.1-1_i386.deb 497e743830f14a7dd8033a20b6226c5b46dc4f21438f61dcb5911bd802648286 5818 libccp4_6.5.1-1_i386.buildinfo 2b92faedea9755d5bc49c2686cc2131cddfb7051d96ffaf51c2dcdf967cfd80c 197364 libccp4c0-dbgsym_6.5.1-1_i386.deb 2b7502997e1ee1335a4ba0bf7e0388208a625541789a1196c56aca3404e8ecb4 94524 libccp4c0_6.5.1-1_i386.deb 12cceeccd632d14a76807297f9978030226d6100a0d4bf160b9a010cbb5a5aad 296084 libccp4f0-dbgsym_6.5.1-1_i386.deb 4e19f57afe6547556148326ed6e857589a127fde4760056d9622b9c0c18e09e5 232800 libccp4f0_6.5.1-1_i386.deb Files: e26deebd6c6a2e4dd6e2040ec64a55ee 61308 libdevel optional libccp4-data_6.5.1-1_all.deb 3143fb8395405dc0b6c92f76f1d24071 42380 libdevel optional libccp4-dev_6.5.1-1_i386.deb d93a2a73bc64c43e5d014c476d689630 5818 science optional libccp4_6.5.1-1_i386.buildinfo 0d09ab4cd49406ddf34706d52c3f44f1 197364 debug optional libccp4c0-dbgsym_6.5.1-1_i386.deb 383c4ccb4199addfdd059d5592709790 94524 libs optional libccp4c0_6.5.1-1_i386.deb 63833f55e1702c68882f57e99aa2d031 296084 debug optional libccp4f0-dbgsym_6.5.1-1_i386.deb 0baabe68dd56e1d291e41907ada214dc 232800 libs optional libccp4f0_6.5.1-1_i386.deb Thu Sep 24 13:23:29 UTC 2020 I: diffoscope 160 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/libccp4_6.5.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/libccp4_6.5.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/libccp4_6.5.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/b1/libccp4_6.5.1-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.TDvTSEORf4/b2/libccp4_6.5.1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.317s) 0.317s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Sep 24 13:23:31 UTC 2020 I: diffoscope 160 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 24 13:23:31 UTC 2020 I: libccp4 from buster built successfully and reproducibly on i386. Thu Sep 24 13:23:32 UTC 2020 I: Submitting .buildinfo files to external archives: Thu Sep 24 13:23:32 UTC 2020 I: Submitting 8.0K b1/libccp4_6.5.1-1_i386.buildinfo.asc Thu Sep 24 13:23:34 UTC 2020 I: Submitting 8.0K b2/libccp4_6.5.1-1_i386.buildinfo.asc Thu Sep 24 13:23:34 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Sep 24 13:23:34 UTC 2020 I: Done submitting .buildinfo files. Thu Sep 24 13:23:34 UTC 2020 I: Removing signed libccp4_6.5.1-1_i386.buildinfo.asc files: removed './b1/libccp4_6.5.1-1_i386.buildinfo.asc' removed './b2/libccp4_6.5.1-1_i386.buildinfo.asc'