Wed Feb 26 08:59:14 UTC 2020 I: starting to build libdata-stag-perl/buster/i386 on jenkins on '2020-02-26 08:58' Wed Feb 26 08:59:14 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/1654/console.log Wed Feb 26 08:59:14 UTC 2020 I: Downloading source for buster/libdata-stag-perl=0.14-2 --2020-02-26 08:59:14-- http://deb.debian.org/debian/pool/main/libd/libdata-stag-perl/libdata-stag-perl_0.14-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) Saving to: ‘libdata-stag-perl_0.14-2.dsc’ 0K .. 100% 4.13M=0.001s 2020-02-26 08:59:14 (4.13 MB/s) - ‘libdata-stag-perl_0.14-2.dsc’ saved [2301/2301] Wed Feb 26 08:59:14 UTC 2020 I: libdata-stag-perl_0.14-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-2 Maintainer: Debian Perl Group Uploaders: Charles Plessy , Damyan Ivanov , Florian Schlichting Homepage: http://stag.sourceforge.net/ Standards-Version: 3.9.8 Vcs-Browser: https://anonscm.debian.org/cgit/pkg-perl/packages/libdata-stag-perl.git Vcs-Git: https://anonscm.debian.org/git/pkg-perl/packages/libdata-stag-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 9) Build-Depends-Indep: perl, libio-string-perl, libxml-perl, rename Package-List: libdata-stag-perl deb perl optional arch=all Checksums-Sha1: 4146dcbfaccb744832ddc3a8e826feb8606faa28 428107 libdata-stag-perl_0.14.orig.tar.gz 8b705867a5ef708ff75932d4d40d56772d5eed6c 5452 libdata-stag-perl_0.14-2.debian.tar.xz Checksums-Sha256: 4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59 428107 libdata-stag-perl_0.14.orig.tar.gz c164e3d94c923de0df73fcba65b870d9abc34ab2e1b70f62b9b0d5ad1e7cca68 5452 libdata-stag-perl_0.14-2.debian.tar.xz Files: f803acf74f1bfccc118aeac5483ee871 428107 libdata-stag-perl_0.14.orig.tar.gz e9d12235ea2d356939488baafc6b9855 5452 libdata-stag-perl_0.14-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQJ8BAEBCgBmBQJXS2iaXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXREMUUxMzE2RTkzQTc2MEE4MTA0RDg1RkFC QjNBNjgwMTg2NDlBQTA2AAoJELs6aAGGSaoGdeoP/RaO8LELeyzB20S9PhaO/rR3 P4E2qs8cjvn75QiKM5eWviqAMnf0CDAvjWDyL15JdUuYsKPdHCU+Gy67SxkKfrte TkEau13JDbphUvaXNSmp5BCChiVJTpqBPdJJEK2R4gEn3e5u224DUB2jNySI9CDU thL8UgIAZuTDeYNrFaAJozjYRvUUzs/jltLUw98WkIlZLFuP/p47WNd8n/EOUtAR cXq0n8x93q3khBPEmsvxSmrEFV2hQkyT7yZ6/HjaSOKY0+GoyTf/1FOp5EUucVhh CQYf7UHfSUWSNbuNidRB+oSUj396GBsx+lljLbTUMQp93OYsZasxFxmYAGehvE7b 5QAOtgZlOnIx5umRet9Hc/E4w4yl9suJyAmkrTMdvsszkCqLw8WV4ummw/hh78+O zn20VcTWpxJNiaEMjODsF91wpZCJDN079LBVHwJUwvuEPnS4iQcth1ig1qp0ZLpi e4b3p7Z5yMK3DHCIKIir8cpiYgRs/LdVu5vXyq+vmDvn7JZqacpZhYKnz8kBvmCx sRpg3wypuaQ3/Ewa5Pf9S4IQ5YAOg3gCvp1eFXSXYP/m+zgeluGPyBnXur1mHRPH 9JWWToa5FmJsN07M8SmY3xMichsHUIZVYMIr+AOyPlC3O1d85jf1tkn6F8CT2lKJ iT7gwNxd57sbvzhZNhjs =6oKo -----END PGP SIGNATURE----- Wed Feb 26 08:59:14 UTC 2020 I: Checking whether the package is not for us Wed Feb 26 08:59:14 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Wed Feb 26 08:59:14 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Wed Feb 26 09:04:06 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 25 20:59:17 -12 2020 I: pbuilder-time-stamp: 1582707557 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libdata-stag-perl_0.14-2.dsc] I: copying [./libdata-stag-perl_0.14.orig.tar.gz] I: copying [./libdata-stag-perl_0.14-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun May 29 10:09:30 2016 -12 gpgv: using RSA key BB3A68018649AA06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libdata-stag-perl_0.14-2.dsc dpkg-source: info: extracting libdata-stag-perl in libdata-stag-perl-0.14 dpkg-source: info: unpacking libdata-stag-perl_0.14.orig.tar.gz dpkg-source: info: unpacking libdata-stag-perl_0.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_names.patch dpkg-source: info: applying no-sf-logo.patch dpkg-source: info: applying fix_pod_errors.patch dpkg-source: info: applying more_pod_errors.patch dpkg-source: info: applying more_spelling_fixes.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), perl, libio-string-perl, libxml-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-perl; however: Package libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu63{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsigsegv2{a} libssl1.1{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libltdl-dev libmail-sendmail-perl libmailtools-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 23.8 MB of archives. After unpacking 82.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 netbase all 5.6 [19.4 kB] Get: 8 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 11 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 12 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB] Get: 20 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u2 [853 kB] Get: 21 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 23 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 26 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 28 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 34 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 35 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 37 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 44 http://deb.debian.org/debian buster/main i386 liburi-perl all 1.76-1 [89.9 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libhtml-parser-perl i386 3.72-3+b3 [106 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libhtml-tree-perl all 5.07-2 [213 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libio-html-perl all 1.001-1 [17.6 kB] Get: 48 http://deb.debian.org/debian buster/main i386 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 52 http://deb.debian.org/debian buster/main i386 perl-openssl-defaults i386 3 [6782 B] Get: 53 http://deb.debian.org/debian buster/main i386 libnet-ssleay-perl i386 1.85-2+b1 [314 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libio-string-perl all 1.08-3 [12.3 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libnet-http-perl all 6.18-1 [24.5 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libwww-perl all 6.36-2 [188 kB] Get: 60 http://deb.debian.org/debian buster/main i386 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 61 http://deb.debian.org/debian buster/main i386 libxml-parser-perl i386 2.44-4 [217 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libxml-perl all 0.08-3 [93.3 kB] Get: 63 http://deb.debian.org/debian buster/main i386 rename all 1.10-1 [17.2 kB] Fetched 23.8 MB in 9s (2703 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package netbase. Preparing to unpack .../06-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../12-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../18-libssl1.1_1.1.1d-0+deb10u2_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u2) ... Selecting previously unselected package openssl. Preparing to unpack .../19-openssl_1.1.1d-0+deb10u2_i386.deb ... Unpacking openssl (1.1.1d-0+deb10u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../20-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../25-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../26-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../28-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../29-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../30-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../31-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../32-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../33-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... 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Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:i386 (1.1.1d-0+deb10u2) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up perl-openssl-defaults:i386 (3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libencode-locale-perl (1.05-1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libio-html-perl (1.001-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up netbase (5.6) ... Setting up openssl (1.1.1d-0+deb10u2) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libtool (2.4.6-9) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libhttp-message-perl (6.18-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhttp-negotiate-perl (6.01-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.36-2) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libxml-perl (0.08-3) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libdata-stag-perl-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libdata-stag-perl dpkg-buildpackage: info: source version 0.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_auto_configure perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libdata-stag-perl-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libdata-stag-perl-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" External Module GD, Graphical Drawing Toolkit, is not installed on this computer. stag-drawtree.pl in Data::Stag needs it for drawing trees External Module XML::LibXSLT, XSLT, is not installed on this computer. Data::Stag::XSLTHandler in Data::Stag needs it for XSLT Transformations External Module Graph::Directed, Generic Graph data stucture and algorithms, is not installed on this computer. Data::Stag::GraphHandler in Data::Stag needs it for transforming stag trees to graphs External Module MLDBM, multilevel hash store, is not installed on this computer. Data::Stag::StagDB in Data::Stag needs it for indexing stag nodes External Module Tk, Tk, is not installed on this computer. stag-view.pl in Data::Stag needs it for tree viewer External Module JSON, JSON parser and writer, is not installed on this computer. Data::Stag::JSONWriter in Data::Stag needs it for Writing JSON Information: There are some external packages and perl modules, listed above, which stag uses. This only effects the functionality which is listed above: the rest of stag will work fine, which includes nearly all of the core functionality. Enjoy the rest of stag, which you can use after going 'make install' Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Data Writing MYMETA.yml and MYMETA.json dh_auto_build make -j1 make[1]: Entering directory '/build/libdata-stag-perl-0.14' cp Data/Stag/GraphHandler.pm blib/lib/Data/Stag/GraphHandler.pm cp Data/Stag/Util.pm blib/lib/Data/Stag/Util.pm cp Data/Stag/null.pm blib/lib/Data/Stag/null.pm cp Data/Stag/HashDB.pm blib/lib/Data/Stag/HashDB.pm cp Data/Stag/SxprWriter.pm blib/lib/Data/Stag/SxprWriter.pm cp Data/Stag.pm blib/lib/Data/Stag.pm cp Data/Stag/SxprParser.pm blib/lib/Data/Stag/SxprParser.pm cp Data/Stag/SAX2Stag.pm blib/lib/Data/Stag/SAX2Stag.pm cp Data/Stag/StagImpl.pm blib/lib/Data/Stag/StagImpl.pm cp Data/Stag/Arr2HTML.pm blib/lib/Data/Stag/Arr2HTML.pm cp Data/Stag/XMLParser.pm blib/lib/Data/Stag/XMLParser.pm cp Data/Stag/XSLTHandler.pm blib/lib/Data/Stag/XSLTHandler.pm cp Data/Stag/ITextParser.pm blib/lib/Data/Stag/ITextParser.pm cp Data/Stag/XMLWriter.pm blib/lib/Data/Stag/XMLWriter.pm cp Data/Stag/PodParser.pm blib/lib/Data/Stag/PodParser.pm cp Data/Stag/StagDB.pm blib/lib/Data/Stag/StagDB.pm cp Data/Stag/JSONWriter.pm blib/lib/Data/Stag/JSONWriter.pm cp Data/Stag/ChainHandler.pm blib/lib/Data/Stag/ChainHandler.pm cp Data/Stag/Writer.pm blib/lib/Data/Stag/Writer.pm cp Data/Stag/Simple.pm blib/lib/Data/Stag/Simple.pm cp Data/Stag/IndentParser.pm blib/lib/Data/Stag/IndentParser.pm cp Data/Stag/BaseHandler.pm blib/lib/Data/Stag/BaseHandler.pm cp Data/Stag/ITextWriter.pm blib/lib/Data/Stag/ITextWriter.pm cp Data/Stag/PerlWriter.pm blib/lib/Data/Stag/PerlWriter.pm cp Data/Stag/Base.pm blib/lib/Data/Stag/Base.pm cp Data/Stag/BaseGenerator.pm blib/lib/Data/Stag/BaseGenerator.pm cp Data/Stag/DTDWriter.pm blib/lib/Data/Stag/DTDWriter.pm cp Data/Stag/StagI.pm blib/lib/Data/Stag/StagI.pm cp Data/Stag/IndentWriter.pm blib/lib/Data/Stag/IndentWriter.pm cp Data/Stag/XSLHandler.pm blib/lib/Data/Stag/XSLHandler.pm cp scripts/stag-autoschema.pl blib/script/stag-autoschema.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-autoschema.pl cp scripts/stag-db.pl blib/script/stag-db.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-db.pl cp scripts/stag-diff.pl blib/script/stag-diff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-diff.pl cp scripts/stag-drawtree.pl blib/script/stag-drawtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-drawtree.pl cp scripts/stag-filter.pl blib/script/stag-filter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-filter.pl cp scripts/stag-findsubtree.pl blib/script/stag-findsubtree.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-findsubtree.pl cp scripts/stag-flatten.pl blib/script/stag-flatten.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-flatten.pl cp scripts/stag-grep.pl blib/script/stag-grep.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-grep.pl cp scripts/stag-handle.pl blib/script/stag-handle.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-handle.pl cp scripts/stag-itext2simple.pl blib/script/stag-itext2simple.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2simple.pl cp scripts/stag-itext2sxpr.pl blib/script/stag-itext2sxpr.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2sxpr.pl cp scripts/stag-itext2xml.pl blib/script/stag-itext2xml.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-itext2xml.pl cp scripts/stag-join.pl blib/script/stag-join.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-join.pl cp scripts/stag-merge.pl blib/script/stag-merge.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-merge.pl cp scripts/stag-mogrify.pl blib/script/stag-mogrify.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-mogrify.pl cp scripts/stag-parse.pl blib/script/stag-parse.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-parse.pl cp scripts/stag-query.pl blib/script/stag-query.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-query.pl cp scripts/stag-splitter.pl blib/script/stag-splitter.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-splitter.pl cp scripts/stag-view.pl blib/script/stag-view.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-view.pl cp scripts/stag-xml2itext.pl blib/script/stag-xml2itext.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/stag-xml2itext.pl Manifying 20 pod documents Manifying 27 pod documents make[1]: Leaving directory '/build/libdata-stag-perl-0.14' dh_auto_test make -j1 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libdata-stag-perl-0.14' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/autoschema.t ....... 1..3 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 '(db (species_set (species+ (common_name "VARCHAR\(31\)") (binomial "VARCHAR\(31\)") (tax_id "INT"))) (gene_set (gene+ (symbol "VARCHAR\(15\)") (tax_id "INT") (phenotype* "VARCHAR\(31\)") (GO_term "VARCHAR\(63\)") (map? (cytological (chromosome "INT") (band "VARCHAR\(15\)"))) (synonym "VARCHAR\(7\)"))) (similarity_set (pair+ (symbol+ "VARCHAR\(15\)")))) ok 1 ok 2 ok 3 ok t/chainhandler.t ..... 1..2 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 chainhandler... checking.. ok 1 ok 2 ok t/db.t ............... 1..1 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 lucas george star wars sci-fi ford harrison han solo fisher carrie princess leia hamill mark luke skywalker earl-jones james darth vader prowse david darth vader guiness alec obi-wan kenobi attack of the clones sci-fi mcgregor ewan obi-wan kenobi portman natalie princess amigdala jackson peter braindead horror - - - lord of the rings fantasy lee christopher saruman kellan ian gandalf kurosawa akira seven samurai samurai mifune toshiro Kikuchiyo cameron john terminator sci-fi schwarzenegger arnold terminator terminator2 sci-fi schwarzenegger arnold terminator coen joel barton fink odd turturro john barton fink goodman john charlie meadows coen ethan barton fink odd turturro john barton fink goodman john charlie meadows star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/emptytag.t ......... 1..3 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 foo 0 0 '(a (b "foo") (c "") (d "0") (e "0") (f "")) ok 1 ok 2 4 1 1 4 ok 3 ok t/get.t .............. 1..17 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 ok 1 ok 2 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 10090 integral membrane protein S:HGNC Hfe HGNC Hfe WNT3A Wnt3a ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/handlers.t ......... 1..9 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:57 2020 # Current time GMT: Wed Feb 26 09:03:57 2020 # Using Test.pm version 1.31 CACHING HGNC CACHING Hfe house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe") (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")) (foo "1")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")))) (pair (symbol "WNT3A") (symbol "Wnt3a") (comment "Dunno what symbol WNT3A is") (comment "Dunno what symbol Wnt3a is")))) HGNC Hfe HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 WNT3A Wnt3a Dunno what symbol WNT3A is Dunno what symbol Wnt3a is HGNC 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 1 human Homo sapiens 9606 Hfe MR2 10090 integral membrane protein house mouse Mus musculus 10090 ok 1 ok 2 ok 3 ok 4 '(gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein") (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090"))) ok 5 ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol tax_id phenotype phenotype GO_term map cytological chromosome band foo species common_name binomial tax_id gene symbol synonym tax_id GO_term species common_name binomial tax_id =>gene_set gene_set=>gene gene=>symbol gene=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band map=>foo gene=>species species=>common_name species=>binomial species=>tax_id gene_set=>gene gene=>symbol gene=>synonym gene=>tax_id gene=>GO_term gene=>species species=>common_name species=>binomial species=>tax_id ok t/handlers2.t ........ 1..9 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 original: house mouse Mus musculus 10090 house mouse Mus musculus 10090 fruitfly Drosophila melanogaster 7227 fruitfly Drosophila melanogaster 7227 human Homo sapiens 9606 human Homo sapiens 9606 remaining tree: '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606")))) ok 1 ok 2 ok 3 '( "") '( "") ok 4 ok 5 ok 6 ok 7 ok 8 '(set) ok 9 ok t/hashdb.t ........... 1..2 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 '(species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) ok 1 HASHING HASHED gene: symbol: HGNC tax_id: 9606 phenotype: Hemochromatosis phenotype: Porphyria variegata GO_term: iron homeostasis map: cytological: chromosome: 6 band: p21.3 ok 2 ok t/homol.t ............ 1..9 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 1 ok 2 ok 3 ok 4 ok 5 HGNC human Homo sapiens 9606 Hemochromatosis Porphyria variegata iron homeostasis 6 p21.3 Hfe MR2 house mouse Mus musculus 10090 integral membrane protein ok 6 ok 7 ok 8 ok 9 names=gene_set gene symbol species common_name binomial tax_id phenotype phenotype GO_term map cytological chromosome band gene symbol synonym species common_name binomial tax_id GO_term =>gene_set gene_set=>gene gene=>symbol gene=>species species=>common_name species=>binomial species=>tax_id gene=>phenotype gene=>phenotype gene=>GO_term gene=>map map=>cytological cytological=>chromosome cytological=>band gene_set=>gene gene=>symbol gene=>synonym gene=>species species=>common_name species=>binomial species=>tax_id gene=>GO_term ok t/parsestr.t ......... 1..6 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 bar y ok 1 example of mixedcontent '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) ok 2 ok 3 ok 4 '(yo (paragraph (@ (id "1")) (. "example of") (bold "mixed") (. "content"))) TEXT '(yo (paragraph (@ (id "1")) (. "TEXT"))) ok 5 ok 6 ok t/qmatch.t ........... 1..9 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31
foo methyl
big dave
bar auchtermuchty
shuggy ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 2 1 2 ok 7 ok 8 2 ok 9 2 1 ok t/roundtrip-attrs.t .. 1..5 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 '(address (a (@ (href "mailto:cjm@fruitfly.org")) (. "fred"))) ok 4 Stag - Structured Tag Library

Stag - Structured Tag Library

top #000000 images/celtic-stag.gif The Stag project currently consists of two perl modules, both of which are available from http://www.cpan.orgCPANor http://sourceforge.net/projects/stagsourceforge:

Data::Stag

This module is for manipulating data as recursively nested tag/value pairs ( Structured tags or Simple Tree aggreggates). At this time there is only a perl implementation, http://search.cpan.org/perldoc?Data::StagData::Stag, but C and Lisp implementations are planned.



Stags can easily be represented as XML or as lisp-style S-expressions, or using the Stag native indented text format. They can also be represented in perl using nested arrays.

DBIx::DBStag

This module is for conversion between relational representations and hierarchical (Stag) representations. SQL query results are automatically decomposed into the relations and a hierarchical structure is inferred. This modules also allows you to create SQL templates - a powerful way of reusing SQL statements joining multiple tables.

http://search.cpan.org/perldoc?DBIx::DBStagDBIx::DBStag
#FF8888 http://www.godatabase.org/cgi-bin/ubiq/ubiq.cgiUBIQ Query Interface A demo of DBStag for mapping query results to hierarchical tag-value data. This interface provides WWW access to a number of bioinformatics databases (Gene Ontology, Ensembl, Chado, BioSQL, GadFly). Templates can be selected, or you can feed in your own SQL.
#FF8888 http://sourceforge.net/projects/stagStag project page on Sourceforge Here you can find the Stag CVS repository, mail lists, etc
#FF8888 http://www.fruitfly.org/~cjm/rel-talk/dbistag.htmlDBStag Tutorial Brief tutorial on basic DBStag usage for biological databases. (slightly out of date - some aspects of DBStag may have changed)
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::CookbookDBIx::DBStag::Cookbook DBStag cookbook - shows how to generate a normalised relational db from an XML source (the CIA world factbook), create your own SQL templates and build a WWW query interface
#FF8888 http://search.cpan.org/perldoc?DBIx::DBStag::SQLTemplateDBIx::DBStag::SQLTemplate The POD manpage describing SQL templates - a powerful way of reusing complex SQL statements
#FF8888 stag-poster.htmlStag Poster DBStag poster from Genome Informatics 2003 at Cold Spring Harbor Laboratory (large image)
http://sourceforge.net SourceForge.net Logo 0 http://sourceforge.net/sflogo.php?group_id=68482&type=1 31 88
mailto:cjm@fruitfly.orgfred
Last modified: Mon Apr 12 11:33:36 PDT 2004 mailto:cjm@fruitfly.org ok 5 ok t/set-attrs.t ........ 1..3 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222")) '(person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555"))) '(dataset (person (name "jim") (phone_no "555-1111") (phone_no "555-2222") (phone_no "555-3333") (phone_no "555-4444")) (person (name "fred") (phone_no "555-5555")) (person (name "fred") (phone_no "555-5555"))) jim 555-1111 555-2222 555-3333 555-4444 jim 555-1111 555-2222 555-3333 555-4444 ok 1 ok 2 ok 3 ok t/set.t .............. 1..2 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 detective Sherlock Holmes secret agent James Bond detective Sherlock Holmes
Great Britain London 221B Baker Street
secret agent James Bond ok 1 detective Sherlock Holmes
Great Britain London 221B Baker Street
secret agent James Bond ok 2 ok t/sxpr.t ............. 1..2 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok t/unhash.t ........... 1..4 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:58 2020 # Current time GMT: Wed Feb 26 09:03:58 2020 # Using Test.pm version 1.31 34
NY 11291 Garden City The Manse 19 Chestnut Ln
James Hill James
NY 10578 Katonah Hickory Street
Sarah 30 Sarah
NY Hickory Street Katonah 10578
James 30 Hill James
The Manse 19 Chestnut Ln Garden City 11291 NY
34 The Manse 19 Chestnut Ln ok 1 blonde blue Fred Jill John Gerald Fred Jill John Gerald blue blonde Jill John Gerald ok 2 ok 3 ok 4 ok t/unset.t ............ 1..4 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:59 2020 # Current time GMT: Wed Feb 26 09:03:59 2020 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok t/write.t ............ 1..1 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:59 2020 # Current time GMT: Wed Feb 26 09:03:59 2020 # Using Test.pm version 1.31 about to write to t/data/test.sxpr written!! '(db (species_set (species (common_name "house mouse") (binomial "Mus musculus") (tax_id "10090")) (species (common_name "fruitfly") (binomial "Drosophila melanogaster") (tax_id "7227")) (species (common_name "human") (binomial "Homo sapiens") (tax_id "9606"))) (gene_set (gene (symbol "HGNC") (tax_id "9606") (phenotype "Hemochromatosis") (phenotype "Porphyria variegata") (GO_term "iron homeostasis") (map (cytological (chromosome "6") (band "p21.3")))) (gene (symbol "Hfe") (synonym "MR2") (tax_id "10090") (GO_term "integral membrane protein"))) (similarity_set (pair (symbol "HGNC") (symbol "Hfe")) (pair (symbol "WNT3A") (symbol "Wnt3a")))) ok 1 ok t/xml1.t ............. 1..7 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:59 2020 # Current time GMT: Wed Feb 26 09:03:59 2020 # Using Test.pm version 1.31 shuggybus driver55 tamforklift driverchips ok 1 $VAR1 = { 'personset' => { 'person' => [ { 'age' => '55', 'name' => 'shuggy', 'job' => 'bus driver' }, { 'favourite_food' => 'chips', 'job' => 'forklift driver', 'name' => 'tam' } ] } }; shuggy bus driver 55 tam forklift driver chips shuggy bus driver 100 tam forklift driver chips checking.. shuggy bus driver 100 ok 2 ok 3 tam forklift driver chips ok 4 ok 5 ok 6 yyy tam forklift driver chips ok 7 ok t/xml2.t ............. 1..4 # Running under perl version 5.028001 for linux # Current time local: Tue Feb 25 21:03:59 2020 # Current time GMT: Wed Feb 26 09:03:59 2020 # Using Test.pm version 1.31 $VAR1 = bless( [ 'person', [ bless( [ 'name', 'davey' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'here' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'green' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'two' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 5 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'igor' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'ginger' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); $VAR1 = bless( [ 'person', [ bless( [ 'name', 'shuggy' ], 'Data::Stag::StagImpl' ), bless( [ 'address', 'there' ], 'Data::Stag::StagImpl' ), bless( [ 'description', [ bless( [ 'hair', 'red' ], 'Data::Stag::StagImpl' ), bless( [ 'eyes', 'three' ], 'Data::Stag::StagImpl' ), bless( [ 'teeth', 1 ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ), bless( [ 'pets', [ bless( [ 'petname', 'thud' ], 'Data::Stag::StagImpl' ), bless( [ 'petname', 'spud' ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ) ] ], 'Data::Stag::StagImpl' ); shuggy
there
red three 1 thud spud desc green two 5 red three 1 ok 1 shuggy
there
red three 1 thud spud finding green haired people.. davey
here
green two 5 igor ginger ok 2 shuggy
there
red three 1 thud spud ok 3 '(a "") '(foo (bar "1")) ok 4 ok All tests successful. Files=20, Tests=102, 2 wallclock secs ( 0.23 usr 0.07 sys + 1.64 cusr 0.18 csys = 2.12 CPU) Result: PASS make[1]: Leaving directory '/build/libdata-stag-perl-0.14' fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/libdata-stag-perl-0.14' dh_auto_install make -j1 install DESTDIR=/build/libdata-stag-perl-0.14/debian/libdata-stag-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/build/libdata-stag-perl-0.14' Manifying 20 pod documents Manifying 27 pod documents Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/GraphHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseGenerator.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/null.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XSLTHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PerlWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/JSONWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/BaseHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Writer.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/HashDB.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagI.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagImpl.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/XMLParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/StagDB.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SAX2Stag.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ChainHandler.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Simple.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Util.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/DTDWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/PodParser.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Base.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/Arr2HTML.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/SxprWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/ITextWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/perl5/Data/Stag/IndentWriter.pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-join.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-merge.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-splitter.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-xml2itext.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-parse.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-findsubtree.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2sxpr.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-autoschema.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2xml.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-drawtree.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-handle.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-query.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-diff.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-db.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-filter.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-grep.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-mogrify.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-itext2simple.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-flatten.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/stag-view.pl.1p Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::DTDWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Arr2HTML.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::HashDB.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::null.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLTHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ITextWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SAX2Stag.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PerlWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Writer.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XSLHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::ChainHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::GraphHandler.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagDB.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::Simple.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::JSONWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::SxprWriter.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::StagImpl.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::IndentParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::BaseGenerator.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::PodParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man3/Data::Stag::XMLParser.3pm Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-drawtree.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-view.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-diff.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-merge.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-mogrify.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-xml2itext.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2simple.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-join.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-autoschema.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2sxpr.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-findsubtree.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-parse.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-grep.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-splitter.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-handle.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-db.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-itext2xml.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-flatten.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-filter.pl Installing /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/stag-query.pl make[2]: Leaving directory '/build/libdata-stag-perl-0.14' file-rename 's/\.pl//' /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/bin/* file-rename 's/\.pl//' /build/libdata-stag-perl-0.14/debian/libdata-stag-perl/usr/share/man/man1/*1p* make[1]: Leaving directory '/build/libdata-stag-perl-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libdata-stag-perl' in '../libdata-stag-perl_0.14-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libdata-stag-perl_0.14-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25177 and its subdirectories I: Current time: Tue Feb 25 21:04:06 -12 2020 I: pbuilder-time-stamp: 1582707846 Wed Feb 26 09:04:06 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Wed Feb 26 09:04:06 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Wed Feb 26 09:04:29 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Wed Feb 26 09:04:30 UTC 2020 I: libdata-stag-perl_0.14-2_i386.changes: Format: 1.8 Date: Mon, 30 May 2016 00:08:11 +0200 Source: libdata-stag-perl Binary: libdata-stag-perl Architecture: all Version: 0.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: gregor herrmann Description: libdata-stag-perl - module to manipulate Structured Tags datastructures Closes: 825434 Changes: libdata-stag-perl (0.14-2) unstable; urgency=medium . * Team upload. . [ gregor herrmann ] * Rename autopkgtest configuration file(s) as per new pkg-perl- autopkgtest schema. . [ Salvatore Bonaccorso ] * debian/control: Use HTTPS transport protocol for Vcs-Git URI . [ gregor herrmann ] * debian/copyright: change Copyright-Format 1.0 URL to HTTPS. * Use (file-)rename instead of (p)rename. (Closes: #825434) * Update years of packaging copyright. * Add a patch to fix more spelling mistakes. * Enable autopkgtest's use.t. * Bump debhelper compatibility level to 9. * Declare compliance with Debian Policy 3.9.8. Checksums-Sha1: 257dd54143286349f2bf0cb37c16c1b0c51a1c63 447580 libdata-stag-perl_0.14-2_all.deb 0531fa9203e43dab18638f64115456d10b5d1357 5303 libdata-stag-perl_0.14-2_i386.buildinfo Checksums-Sha256: 93d5380d1da78b0fc6d49fd6990afcf13e8d831f0764e9413382a598f33e73bb 447580 libdata-stag-perl_0.14-2_all.deb 10b34fd5003de64e99838e513d0936c75a4f1f14e0c59ebe61025838b063099a 5303 libdata-stag-perl_0.14-2_i386.buildinfo Files: 22f0e6e88f94d25b17352671a381a26e 447580 perl optional libdata-stag-perl_0.14-2_all.deb 56685083e26b4c2ae58c38b5bacdda94 5303 perl optional libdata-stag-perl_0.14-2_i386.buildinfo Wed Feb 26 09:04:32 UTC 2020 I: diffoscope 137 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.F82EdOzjps/libdata-stag-perl_0.14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.F82EdOzjps/libdata-stag-perl_0.14-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.F82EdOzjps/libdata-stag-perl_0.14-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.F82EdOzjps/b1/libdata-stag-perl_0.14-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.F82EdOzjps/b2/libdata-stag-perl_0.14-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.185s) 1.185s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 10 calls diffoscope.comparators.binary.FilesystemFile Wed Feb 26 09:04:35 UTC 2020 I: diffoscope 137 found no differences in the changes files, and a .buildinfo file also exists. Wed Feb 26 09:04:35 UTC 2020 I: libdata-stag-perl from buster built successfully and reproducibly on i386. Wed Feb 26 09:04:37 UTC 2020 I: Submitting .buildinfo files to external archives: Wed Feb 26 09:04:37 UTC 2020 I: Submitting 8.0K b1/libdata-stag-perl_0.14-2_i386.buildinfo.asc Wed Feb 26 09:05:07 UTC 2020 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Wed Feb 26 09:05:07 UTC 2020 I: Submitting 8.0K b2/libdata-stag-perl_0.14-2_i386.buildinfo.asc Wed Feb 26 09:05:37 UTC 2020 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Wed Feb 26 09:05:37 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Feb 26 09:05:37 UTC 2020 I: Done submitting .buildinfo files. Wed Feb 26 09:05:37 UTC 2020 I: Removing signed libdata-stag-perl_0.14-2_i386.buildinfo.asc files: removed './b1/libdata-stag-perl_0.14-2_i386.buildinfo.asc' removed './b2/libdata-stag-perl_0.14-2_i386.buildinfo.asc'