Sat Jun 22 00:17:24 UTC 2019 I: starting to build metastudent-data/buster/i386 on jenkins on '2019-06-22 00:17' Sat Jun 22 00:17:24 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/181/console.log Sat Jun 22 00:17:24 UTC 2019 I: Downloading source for buster/metastudent-data=2.0.1-4 --2019-06-22 00:17:24-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-4.dsc [following] --2019-06-22 00:17:25-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-4.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2127 (2.1K) Saving to: ‘metastudent-data_2.0.1-4.dsc’ 0K .. 100% 134M=0s 2019-06-22 00:17:25 (134 MB/s) - ‘metastudent-data_2.0.1-4.dsc’ saved [2127/2127] Sat Jun 22 00:17:25 UTC 2019 I: metastudent-data_2.0.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-4 Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Homepage: https://rostlab.org/owiki/index.php/Metastudent Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/metastudent-data Vcs-Git: https://salsa.debian.org/med-team/metastudent-data.git Build-Depends-Indep: ncbi-blast+-legacy (>= 2.5.0-2~) | blast2, debhelper (>= 11~), rsync Package-List: metastudent-data deb science optional arch=all Checksums-Sha1: 69e4fe22d32f87a3dc5da934252b693a91b0c999 152941188 metastudent-data_2.0.1.orig.tar.xz 88aefb0dcf39f823b3bfee8d6b7cb1dff268f4fa 4732 metastudent-data_2.0.1-4.debian.tar.xz Checksums-Sha256: 8bec8a080711cba270256fdbc1035961a63ba0b5af3f6f75f67741e9b53a34e7 152941188 metastudent-data_2.0.1.orig.tar.xz 39d19da7d9ca3d3f6992f27c4032827c002ba3027d4ea72d26c79e0039f44825 4732 metastudent-data_2.0.1-4.debian.tar.xz Files: 981f92b555b8e2846423dd9c0a616ce5 152941188 metastudent-data_2.0.1.orig.tar.xz b2d7c962a9904c4a1856b55567ef700f 4732 metastudent-data_2.0.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvS9JEOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFW9RAAmfCjPN0Hf6RC83NrV45FtESaXJJxfnKdY/7M zWzeHzz6UC8/ynXLJAJW72DeKsOSAkecWDTDqRSGU5XmpBK9D0A4ZSJcCcCK1evG Abzhnuuvps6JIkYKPTcLhzBc2LKEJorKyghLIqmyCi4RxSv0tGyQyDDbNK/Bxwcz sjgGOQmdBuZe2CA/VzNbV9zUAtm2yppT2hbcjBjY+jgIGhMG8gl6HGG2n/lCXyLa CHJ8vwki2emKIZj5dVSBfFTJZxMHsJ4FjRjxNf6m7ka/EERONZQpQzYMM30OOKiQ 7I0Af9yyKL2H0Z9VLryRM6CcWav+DNHHkWyKDH7YFdKgF31G0eZ+8hV/HT1gC6pL MUk823UPPnww+0HgpMRi7m7qG511lYZr+A8wkif2OWLVfveNra8J9qVjbhFSmdiO wJLsrF6z6AziePVjUtYzKH5fOoOFdVI07EfhCxuLS7lAIQkGOw8eKA6NlmsymAZD qGQ526LJX88oRhN3ugIodGVpzRhEM0aVIW69zBTF3fgut0Dyq6U9Ey8QxjI/HzjK TKgEVJKQ2crW9n9DeMxFzSEvXzwJx4cYFJ52qu/9w1WvZ4EPSxGUSadnbyzHXh5V KhyVEjk9y1927xcvhk+mfsgKeTQR+E1XJrmPUDsjyZOq3dke8QlZ1WaBBsDLmvFY UKn78eI= =lPCk -----END PGP SIGNATURE----- Sat Jun 22 00:17:25 UTC 2019 I: Checking whether the package is not for us Sat Jun 22 00:17:25 UTC 2019 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Sat Jun 22 00:17:25 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Sat Jun 22 01:05:11 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 12:19:48 -12 2019 I: pbuilder-time-stamp: 1561162788 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metastudent-data_2.0.1-4.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 25 23:03:45 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./metastudent-data_2.0.1-4.dsc dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ncbi-blast+-legacy (>= 2.5.0-2~) | blast2, debhelper (>= 11~), rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy (>= 2.5.0-2~) | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libncurses6{a} libpipeline1{a} libpopt0{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} lsb-base{a} m4{a} man-db{a} mime-support{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} po-debconf{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} rsync{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After unpacking 168 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2 [395 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2 [1383 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-1 [102 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2 [1935 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2 [305 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblmdb0 i386 0.9.22-1 [46.3 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmbedcrypto3 i386 2.16.0-1 [222 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmbedx509-0 i386 2.16.0-1 [93.0 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmbedtls12 i386 2.16.0-1 [133 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpopt0 i386 1.16-12 [51.7 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 ncbi-data all 6.1.20170106-6 [3692 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 ncbi-blast+ i386 2.8.1-1 [11.7 MB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 ncbi-blast+-legacy all 2.8.1-1 [10.5 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 rsync i386 3.1.3-6 [412 kB] Fetched 41.8 MB in 36s (1147 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.16-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2_i386.deb ... Unpacking python2.7-minimal (2.7.16-2) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_i386.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1c-1_i386.deb ... Unpacking libssl1.1:i386 (1.1.1c-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.16-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2_i386.deb ... Unpacking python2.7 (2.7.16-2) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython2.7-minimal:i386 (2.7.16-2) ... Setting up python2.7-minimal (2.7.16-2) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20696 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_i386.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20729 files and directories currently installed.) Preparing to unpack .../00-python_2.7.16-1_i386.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../06-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../12-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../13-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../14-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../15-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... 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Unpacking liblmdb0:i386 (0.9.22-1) ... Selecting previously unselected package libmbedcrypto3:i386. Preparing to unpack .../29-libmbedcrypto3_2.16.0-1_i386.deb ... Unpacking libmbedcrypto3:i386 (2.16.0-1) ... Selecting previously unselected package libmbedx509-0:i386. Preparing to unpack .../30-libmbedx509-0_2.16.0-1_i386.deb ... Unpacking libmbedx509-0:i386 (2.16.0-1) ... Selecting previously unselected package libmbedtls12:i386. Preparing to unpack .../31-libmbedtls12_2.16.0-1_i386.deb ... Unpacking libmbedtls12:i386 (2.16.0-1) ... Selecting previously unselected package libpopt0:i386. Preparing to unpack .../32-libpopt0_1.16-12_i386.deb ... Unpacking libpopt0:i386 (1.16-12) ... Selecting previously unselected package lsb-base. Preparing to unpack .../33-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../34-ncbi-data_6.1.20170106-6_all.deb ... Unpacking ncbi-data (6.1.20170106-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../35-ncbi-blast+_2.8.1-1_i386.deb ... Unpacking ncbi-blast+ (2.8.1-1) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../36-ncbi-blast+-legacy_2.8.1-1_all.deb ... Unpacking ncbi-blast+-legacy (2.8.1-1) ... Selecting previously unselected package rsync. Preparing to unpack .../37-rsync_3.1.3-6_i386.deb ... Unpacking rsync (3.1.3-6) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up liblmdb0:i386 (0.9.22-1) ... Setting up ncbi-data (6.1.20170106-6) ... Setting up lsb-base (10.2019051400) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libssl1.1:i386 (1.1.1c-1) ... Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libmbedcrypto3:i386 (2.16.0-1) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libpopt0:i386 (1.16-12) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libmbedx509-0:i386 (2.16.0-1) ... Setting up libmbedtls12:i386 (2.16.0-1) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up rsync (3.1.3-6) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up ncbi-blast+ (2.8.1-1) ... Setting up ncbi-blast+-legacy (2.8.1-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build make -j10 make[1]: Entering directory '/build/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ formatdb -p T -i "dataset_201401/BPO/goasp.fasta" -n "dataset_201401/BPO/goasp.fasta" && rm -f formatdb.log mkdir -p dataset_201401/MFO/ && \ formatdb -p T -i "dataset_201401/MFO/goasp.fasta" -n "dataset_201401/MFO/goasp.fasta" && rm -f formatdb.log mkdir -p dataset_201401/CCO/ && \ formatdb -p T -i "dataset_201401/CCO/goasp.fasta" -n "dataset_201401/CCO/goasp.fasta" && rm -f formatdb.log Building a new DB, current time: 06/22/2019 00:44:53 New DB name: /build/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B Building a new DB, current time: 06/22/2019 00:44:53 New DB name: /build/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Building a new DB, current time: 06/22/2019 00:44:53 New DB name: /build/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 392822 sequences in 391.629 seconds. Adding sequences from FASTA; added 459503 sequences in 483.889 seconds. Adding sequences from FASTA; added 486000 sequences in 501.916 seconds. make[1]: Leaving directory '/build/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j10 install DESTDIR=/build/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/metastudent-data-2.0.1' make[2]: Entering directory '/build/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /bin/mkdir -p '/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/metastudent-data-2.0.1' make[1]: Leaving directory '/build/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../metastudent-data_2.0.1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30575 and its subdirectories I: Current time: Fri Jun 21 13:05:07 -12 2019 I: pbuilder-time-stamp: 1561165507 Sat Jun 22 01:05:11 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Sat Jun 22 01:05:11 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Sat Jun 22 01:07:58 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Sat Jun 22 01:07:59 UTC 2019 I: metastudent-data_2.0.1-4_i386.changes: Format: 1.8 Date: Fri, 26 Oct 2018 11:51:17 +0200 Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Changes: metastudent-data (2.0.1-4) unstable; urgency=medium . * Team upload. . [ Jelmer Vernoo ] * Trim trailing whitespace. . [ Andreas Tille ] * Drop unneeded get-orig-source target * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 98149547812a37b96fb9326c88d2e4d9c86cbf7d 224710720 metastudent-data_2.0.1-4_all.deb b1959ecf2a330812ac6042e59957d23f23d6a376 4970 metastudent-data_2.0.1-4_i386.buildinfo Checksums-Sha256: 1c4232e390e26a7a00b55b320860675865c2a324813c4197a6c67a6a098a4809 224710720 metastudent-data_2.0.1-4_all.deb 79d1e1320cc84165edf0ae099c2220911a9cbe596859d4b55f8a246a9244f348 4970 metastudent-data_2.0.1-4_i386.buildinfo Files: 17c69b216993ef39dbbb4dd438e5670f 224710720 science optional metastudent-data_2.0.1-4_all.deb 3dd4ee3f4f32bdbec30ca1adf8810589 4970 science optional metastudent-data_2.0.1-4_i386.buildinfo Sat Jun 22 01:08:00 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.3RHu32geWk/metastudent-data_2.0.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.3RHu32geWk/metastudent-data_2.0.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.3RHu32geWk/metastudent-data_2.0.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.3RHu32geWk/b1/metastudent-data_2.0.1-4_i386.changes /srv/reproducible-results/rbuild-debian/tmp.3RHu32geWk/b2/metastudent-data_2.0.1-4_i386.changes ## close_archive (total time: 0.000s) 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.tar.TarContainer ## command (total time: 77.929s) 52.874s 6 calls xz 14.496s 30 calls xxd 10.379s 32 calls diff 0.179s 6 calls cmp 0.001s 7 calls cmp (internal) ## compare_files (cumulative) (total time: 265.644s) 77.174s 1 call abc.DotChangesFile 76.855s 1 call abc.DebFile 74.940s 2 calls abc.XzFile 21.740s 1 call abc.DebDataTarFile 14.812s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.106s 1 call abc.TarFile 0.018s 1 call abc.Md5sumsFile ## container_extract (total time: 61.308s) 52.875s 6 calls diffoscope.comparators.xz.XzContainer 6.620s 38 calls diffoscope.comparators.deb.DebTarContainer 1.809s 8 calls diffoscope.comparators.deb.DebContainer 0.004s 6 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.182s) 0.126s 2 calls diffoscope.comparators.utils.archive.ArchiveMember 0.046s 8 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.011s 1 call diffoscope.comparators.debian.DebControlMember 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.Md5sumsFile ## main (total time: 79.848s) 79.158s 2 calls outputs 0.691s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.635s) 0.634s 1 call html 0.001s 1 call text 0.001s 1 call json ## recognizes (total time: 1.394s) 1.160s 10 calls diffoscope.comparators.binary.FilesystemFile 0.166s 1202 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.055s 218 calls diffoscope.comparators.utils.archive.ArchiveMember 0.012s 38 calls diffoscope.comparators.debian.DebControlMember 0.000s 8 calls abc.DotChangesFile Sat Jun 22 01:09:21 UTC 2019 E: metastudent-data failed to build reproducibly in buster on i386. Sat Jun 22 01:09:23 UTC 2019 I: Submitting .buildinfo files to external archives: Sat Jun 22 01:09:23 UTC 2019 I: Submitting 8.0K b1/metastudent-data_2.0.1-4_i386.buildinfo.asc Sat Jun 22 01:09:45 UTC 2019 I: Submitting 8.0K b2/metastudent-data_2.0.1-4_i386.buildinfo.asc Sat Jun 22 01:09:51 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 22 01:09:51 UTC 2019 I: Done submitting .buildinfo files. Sat Jun 22 01:09:51 UTC 2019 I: Removing signed metastudent-data_2.0.1-4_i386.buildinfo.asc files: removed './b1/metastudent-data_2.0.1-4_i386.buildinfo.asc' removed './b2/metastudent-data_2.0.1-4_i386.buildinfo.asc'