Sun Jun 9 13:29:54 UTC 2019 I: starting to build minc-tools/buster/i386 on jenkins on '2019-06-09 13:29' Sun Jun 9 13:29:54 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/1459/console.log Sun Jun 9 13:29:54 UTC 2019 I: Downloading source for buster/minc-tools=2.3.00+dfsg-3 --2019-06-09 13:29:54-- http://deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00+dfsg-3.dsc [following] --2019-06-09 13:29:54-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00+dfsg-3.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2172 (2.1K) Saving to: ‘minc-tools_2.3.00+dfsg-3.dsc’ 0K .. 100% 4.08M=0.001s 2019-06-09 13:29:54 (4.08 MB/s) - ‘minc-tools_2.3.00+dfsg-3.dsc’ saved [2172/2172] Sun Jun 9 13:29:55 UTC 2019 I: minc-tools_2.3.00+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minc-tools Binary: minc-tools Architecture: any Version: 2.3.00+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins , Andreas Tille Homepage: http://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/minc-tools Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git Build-Depends: debhelper (>= 11~), cmake, bison, flex, libminc-dev (>= 2.3), libnifti-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev Package-List: minc-tools deb science optional arch=any Checksums-Sha1: d5f2d7d633410b1a1f1d4026adcd2c125a16847f 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 1811e5772b6cd627e55a433acf796a965b226909 10760 minc-tools_2.3.00+dfsg-3.debian.tar.xz Checksums-Sha256: 002b01c54b11305dc7350cc7e553debc4d07d4896b2eee850233d07ecc9989b9 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 72aaab0afa1779b6f0277aa8050d5d48c2b73956b673147f701fd8255c1ca364 10760 minc-tools_2.3.00+dfsg-3.debian.tar.xz Files: 629912702e72bce17b78361027105e2b 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz dd8dd488c1e75ba43e8e7ace31e30012 10760 minc-tools_2.3.00+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvR4hwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF1GQ//cPODcjkL3K/Btm6Mrkm6BJa2uZX2UTR6 3Qmfv6p9a6MdvqIemUZYoIRqRGXjzo4o5lFqBAwXWdqztu+0UDxHoki08QrMFO5M 8i1x3eEQJxm5PGSi/cDkpQ99tWCkM2g7lmGsfRd4wUqtFY793E3yFdVfkTWqySEH gK9yOhTXNoh+siaVrt5oZI2xs4NLM78AFZbRkTjjJNiu8Mq361R4nWp3i5bnnnpI N2joaFBrzrhf8eIj58GKMZbwJRn/eUO+I+d9DvpRNJuLFX2tXCj7fqURTl5wQ5GX /Rr/UZ3sipJsyGYS8k06L9pNin6cltlXI0MtElNX/PkSrwDbG/IVbrXmHugNG/ol frDh/hL3FFqnF8HJ5upZ47Ofv1SpAv2JhtK/RZbBaCMLBhDvIeN8SoW0zYELCZEq Jr4K1FwcTB4gk8HhMH9dkzg/MR3UKCaS9N40yydAjUeKJpb0Ec921fkpAO5wdomG 8ILfrDJFuwzcm7/pjR1mIy9FkIp6e69i7uaClCbODb1MH6LlPcNZYcuptHaH5xLd LCYVyf1X5Zl8RSLfFpqY4sM4BT5888DXPuJ5AbJkAJvBR2XkUJlLZuY4WET7653Q oQ+qxoejW/cEanTDwY2gyhOj/MguJamFiNOQdjt0k+1+CApRIWYqDezHlY1rSllp NVQcWKS+fFs= =VdrD -----END PGP SIGNATURE----- Sun Jun 9 13:29:55 UTC 2019 I: Checking whether the package is not for us Sun Jun 9 13:29:55 UTC 2019 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Sun Jun 9 13:29:55 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Sun Jun 9 13:46:07 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 9 01:30:00 -12 2019 I: pbuilder-time-stamp: 1560087000 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [minc-tools_2.3.00+dfsg-3.dsc] I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz] I: copying [./minc-tools_2.3.00+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 25 03:32:44 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./minc-tools_2.3.00+dfsg-3.dsc dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, bison, flex, libminc-dev (>= 2.3), libnifti-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on libminc-dev (>= 2.3); however: Package libminc-dev is not installed. pbuilder-satisfydepends-dummy depends on libnifti-dev; however: Package libnifti-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libminc-dev{a} libminc2-5.2.0{a} libncurses6{a} libnetcdf-dev{a} libnetcdf13{a} libnghttp2-14{a} libnifti-dev{a} libnifti2{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libprocps7{a} libpsl5{a} libptexenc1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} poppler-data{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 95.9 MB of archives. After unpacking 336 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 flex i386 2.6.4-6.2 [446 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 poppler-data all 0.4.9-2 [1473 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 tex-common all 6.11 [53.1 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libprocps7 i386 2:3.3.15-2 [62.7 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 procps i386 2:3.3.15-2 [259 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbison-dev i386 2:3.3.2.dfsg-1 [500 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 bison i386 2:3.3.2.dfsg-1 [877 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 cmake-data all 3.13.4-1 [1476 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive13 i386 3.3.3-4 [351 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-2 [68.5 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-2 [126 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1b-2 [1525 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-2 [395 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-2 [168 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1 [69.9 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1 [109 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3 [236 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2 [90.3 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-3 [358 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-1 [102 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjsoncpp1 i386 1.7.4-3 [85.0 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 librhash0 i386 1.3.8-1 [135 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuv1 i386 1.24.1-1 [116 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 cmake i386 3.13.4-1 [3747 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 66 http://cdn-fastly.deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 67 http://cdn-fastly.deb.debian.org/debian buster/main i386 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 68 http://cdn-fastly.deb.debian.org/debian buster/main i386 hdf5-helpers i386 1.10.4+repack-10 [35.2 kB] Get: 69 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 70 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 71 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 72 http://cdn-fastly.deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 73 http://cdn-fastly.deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 74 http://cdn-fastly.deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.14-1 [225 kB] Get: 75 http://cdn-fastly.deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 76 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbrotli1 i386 1.0.7-2 [267 kB] Get: 77 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 78 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3 [394 kB] Get: 79 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 80 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 81 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 82 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 83 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 84 http://cdn-fastly.deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 85 http://cdn-fastly.deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 86 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 87 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 88 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 89 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 90 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 91 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6 [338 kB] Get: 92 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcupsimage2 i386 2.2.10-6 [133 kB] Get: 93 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl3-gnutls i386 7.64.0-3 [355 kB] Get: 94 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl4-gnutls-dev i386 7.64.0-3 [454 kB] Get: 95 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 96 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 97 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgs9-common all 9.27~dfsg-2 [5135 kB] Get: 98 http://cdn-fastly.deb.debian.org/debian buster/main i386 libidn11 i386 1.33-2.2 [116 kB] Get: 99 http://cdn-fastly.deb.debian.org/debian buster/main i386 libijs-0.35 i386 0.35-14 [18.9 kB] Get: 100 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjbig2dec0 i386 0.16-1 [64.6 kB] Get: 101 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 102 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 103 http://cdn-fastly.deb.debian.org/debian buster/main i386 libopenjp2-7 i386 2.3.0-2 [164 kB] Get: 104 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.26 [20.9 kB] Get: 105 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 106 http://cdn-fastly.deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 107 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtiff5 i386 4.0.10-4 [268 kB] Get: 108 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgs9 i386 9.27~dfsg-2 [2299 kB] Get: 109 http://cdn-fastly.deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 110 http://cdn-fastly.deb.debian.org/debian buster/main i386 libharfbuzz-icu0 i386 2.3.1-1 [834 kB] Get: 111 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB] Get: 112 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [155 kB] Get: 113 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 114 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 115 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 116 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-dev i386 1.10.4+repack-10 [2738 kB] Get: 117 http://cdn-fastly.deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 118 http://cdn-fastly.deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 119 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkpathsea6 i386 2018.20181218.49446-1 [171 kB] Get: 120 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnetcdf13 i386 1:4.6.2-1 [440 kB] Get: 121 http://cdn-fastly.deb.debian.org/debian buster/main i386 libminc2-5.2.0 i386 2.4.03-2+b1 [263 kB] Get: 122 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnetcdf-dev i386 1:4.6.2-1 [82.7 kB] Get: 123 http://cdn-fastly.deb.debian.org/debian buster/main i386 libminc-dev i386 2.4.03-2+b1 [73.9 kB] Get: 124 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnifti2 i386 2.0.0-3 [101 kB] Get: 125 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnifti-dev i386 2.0.0-3 [140 kB] Get: 126 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.26 [18.1 kB] Get: 127 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpotrace0 i386 1.15-1 [25.6 kB] Get: 128 http://cdn-fastly.deb.debian.org/debian buster/main i386 libptexenc1 i386 2018.20181218.49446-1 [61.6 kB] Get: 129 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 130 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsynctex2 i386 2018.20181218.49446-1 [83.5 kB] Get: 131 http://cdn-fastly.deb.debian.org/debian buster/main i386 libteckit0 i386 2.5.8+ds2-5 [268 kB] Get: 132 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtexlua52 i386 2018.20181218.49446-1 [121 kB] Get: 133 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtexlua53 i386 2018.20181218.49446-1 [141 kB] Get: 134 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtexluajit2 i386 2018.20181218.49446-1 [270 kB] Get: 135 http://cdn-fastly.deb.debian.org/debian buster/main i386 libwoff1 i386 1.0.2-1 [46.0 kB] Get: 136 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 137 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 138 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 139 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxaw7 i386 2:1.0.13-1+b2 [209 kB] Get: 140 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 141 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxxhash0 i386 0.6.5-2 [8788 B] Get: 142 http://cdn-fastly.deb.debian.org/debian buster/main i386 libzzip-0-13 i386 0.13.62-3.2 [57.3 kB] Get: 143 http://cdn-fastly.deb.debian.org/debian buster/main i386 t1utils i386 1.41-3 [62.2 kB] Get: 144 http://cdn-fastly.deb.debian.org/debian buster/main i386 texlive-binaries i386 2018.20181218.49446-1 [11.2 MB] Get: 145 http://cdn-fastly.deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1 [73.3 kB] Get: 146 http://cdn-fastly.deb.debian.org/debian buster/main i386 texlive-base all 2018.20190227-2 [19.7 MB] Get: 147 http://cdn-fastly.deb.debian.org/debian buster/main i386 texlive-latex-base all 2018.20190227-2 [984 kB] Fetched 95.9 MB in 1min 23s (1151 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../006-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package flex. Preparing to unpack .../008-flex_2.6.4-6.2_i386.deb ... Unpacking flex (2.6.4-6.2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../009-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../012-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../013-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package libprocps7:i386. Preparing to unpack .../014-libprocps7_2%3a3.3.15-2_i386.deb ... Unpacking libprocps7:i386 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../015-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../016-procps_2%3a3.3.15-2_i386.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../017-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../018-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../019-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../020-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../022-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../023-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../024-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libbison-dev:i386. Preparing to unpack .../025-libbison-dev_2%3a3.3.2.dfsg-1_i386.deb ... Unpacking libbison-dev:i386 (2:3.3.2.dfsg-1) ... Selecting previously unselected package bison. Preparing to unpack .../026-bison_2%3a3.3.2.dfsg-1_i386.deb ... Unpacking bison (2:3.3.2.dfsg-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../027-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../028-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../029-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../030-libarchive13_3.3.3-4_i386.deb ... Unpacking libarchive13:i386 (3.3.3-4) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../031-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../032-libkrb5support0_1.17-2_i386.deb ... Unpacking libkrb5support0:i386 (1.17-2) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../033-libk5crypto3_1.17-2_i386.deb ... Unpacking libk5crypto3:i386 (1.17-2) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../034-libssl1.1_1.1.1b-2_i386.deb ... Unpacking libssl1.1:i386 (1.1.1b-2) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../035-libkrb5-3_1.17-2_i386.deb ... Unpacking libkrb5-3:i386 (1.17-2) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../036-libgssapi-krb5-2_1.17-2_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../037-libsasl2-modules-db_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../038-libsasl2-2_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../039-libldap-common_2.4.47+dfsg-3_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../040-libldap-2.4-2_2.4.47+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../041-libnghttp2-14_1.36.0-2_i386.deb ... Unpacking libnghttp2-14:i386 (1.36.0-2) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../042-libpsl5_0.20.2-2_i386.deb ... Unpacking libpsl5:i386 (0.20.2-2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../043-librtmp1_2.4+20151223.gitfa8646d.1-2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../044-libssh2-1_1.8.0-2.1_i386.deb ... Unpacking libssh2-1:i386 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../045-libcurl4_7.64.0-3_i386.deb ... Unpacking libcurl4:i386 (7.64.0-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../046-libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package libjsoncpp1:i386. Preparing to unpack .../047-libjsoncpp1_1.7.4-3_i386.deb ... Unpacking libjsoncpp1:i386 (1.7.4-3) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../048-librhash0_1.3.8-1_i386.deb ... Unpacking librhash0:i386 (1.3.8-1) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../049-libuv1_1.24.1-1_i386.deb ... Unpacking libuv1:i386 (1.24.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../050-cmake_3.13.4-1_i386.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../051-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../052-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../053-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../054-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../055-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../056-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../057-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../058-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../059-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../060-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../061-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../062-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../063-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../064-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... 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Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.3.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg 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/build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu 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target mincaverage make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build Scanning dependencies of target mincmath make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build Scanning dependencies of target mincdump make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 1%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o [ 2%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c [ 2%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o [ 3%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 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-I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c [ 4%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c [ 5%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c [ 6%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c [ 7%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c [ 8%] Linking C executable minccopy [ 9%] Linking C executable mincmakevector cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 [ 10%] Linking C executable mincmakescalar cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 [ 11%] Linking C executable voxeltoworld /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 [ 12%] Linking C executable mincexample1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] (void) sprintf(string, "%s%d", dimname, idim); ^~ /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] (void) sprintf(string, "%s%d", dimname, idim); ^~~~~~ In file included from /usr/include/stdio.h:873, from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 12%] Built target voxeltoworld make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target mincexpand make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 12%] Built target minccopy make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend [ 12%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 12%] Built target mincexample1 make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= [ 12%] Built target mincmakevector make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend [ 13%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 [ 14%] Linking C executable mincmath cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= Scanning dependencies of target mincconcat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build [ 14%] Built target mincmakescalar /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf Scanning dependencies of target mincextract make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 15%] Linking C executable mincinfo make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build [ 16%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 [ 17%] Linking C executable mincaverage cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 18%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o [ 19%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c [ 19%] [BISON][ncgentab] Building parser with bison 3.3.2 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y Scanning dependencies of target minclookup make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 20%] Linking C executable mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 [ 20%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 20%] Built target mincinfo make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend [ 20%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o [ 20%] Built target mincmath cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= [ 20%] Built target mincaverage make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= Scanning dependencies of target mincconvert cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target xfminvert Scanning dependencies of target mincreshape make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 21%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o Scanning dependencies of target mincgen make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c [ 22%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c [ 23%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o [ 24%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 24%] Built target mincexpand make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend [ 25%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= Scanning dependencies of target minc_modify_header make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 26%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c [ 27%] Linking C executable mincextract cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 28%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c [ 29%] Linking C executable xfminvert cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 [ 30%] Linking C executable mincconvert cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 31%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c [ 32%] Linking C executable minclookup cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 32%] Built target mincextract [ 32%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c [ 32%] Linking C executable mincconcat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 32%] Linking C executable minc_modify_header cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 [ 33%] Linking C executable mincdump cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 33%] Built target mincconvert make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 33%] Built target xfminvert make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= [ 34%] [BISON][gram] Building parser with bison 3.3.2 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] [ 34%] Built target minclookup make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= Scanning dependencies of target minctoraw make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' 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-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c [ 36%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 36%] Built target mincconcat make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 36%] Built target mincdump make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= Scanning dependencies of target mincwindow make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 36%] Built target minc_modify_header make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend Scanning dependencies of target invert_raw_image make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build [ 37%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o [ 38%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c [ 39%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c [ 40%] [FLEX][lex] Building scanner with flex 2.6.4 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l Scanning dependencies of target mincmorph make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 40%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c [ 41%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c [ 41%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c Scanning dependencies of target minccalc [ 42%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build [ 43%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c [ 44%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c [ 45%] Linking C executable mincwindow cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 [ 46%] Linking C executable invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 [ 47%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 47%] Linking C executable minctoraw cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 47%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c [ 48%] Linking C executable mincresample cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 49%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 49%] Built target mincwindow make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= [ 49%] Built target invert_raw_image make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= Scanning dependencies of target mincsample make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target transformtags make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build [ 50%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c [ 51%] Linking C executable mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 51%] Built target minctoraw make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= [ 51%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o [ 52%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf Scanning dependencies of target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build [ 53%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c [ 54%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 54%] Built target mincresample [ 55%] Linking C executable transformtags make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= [ 56%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o [ 56%] Built target mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= Scanning dependencies of target worldtovoxel make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Scanning dependencies of target xfmconcat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build Scanning dependencies of target rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 57%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o [ 58%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c [ 59%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c [ 60%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 60%] Linking C executable worldtovoxel [ 60%] Built target transformtags cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 60%] Linking C executable mincsample Scanning dependencies of target minccmp cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 61%] Linking C executable xfmconcat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 [ 61%] Linking C executable mincblob cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 [ 62%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 63%] Linking C executable mincstats cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 64%] Linking C executable mincgen [ 65%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c [ 65%] Built target mincblob make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 65%] Built target xfmconcat [ 65%] Built target worldtovoxel make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= [ 65%] Built target mincstats make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend [ 65%] Built target mincsample [ 66%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o [ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= Scanning dependencies of target mincexample2 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build Scanning dependencies of target upet2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 68%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c Scanning dependencies of target acr_nema [ 69%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c [ 69%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 70%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c [ 70%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c [ 71%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c [ 72%] Linking C executable mincmorph cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro 'VERSIONSTR' {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function 'upet_to_minc': /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] argv_tmp[1] = VERSIONSTR; ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' argv_tmp[1] = VERSIONSTR; ^~~~~~~~~~ make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 73%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 73%] Built target mincgen make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= Scanning dependencies of target mnc2nii make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 74%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c [ 75%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c [ 76%] Linking C executable minccmp cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 Scanning dependencies of target ecattominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 77%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 77%] Built target mincmorph make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] printf("# of voxels %ld\n", nii_ptr->nvox); ~~^ ~~~~~~~~~~~~~ %d /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:743:23: warning: passing argument 3 of 'restructure_array' from incompatible pointer type [-Wincompatible-pointer-types] nii_lens, ^~~~~~~~ In file included from /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:8: /usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' const size_t *lengths_perm, ~~~~~~~~~~~~~~^~~~~~~~~~~~ Scanning dependencies of target minctoecat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 78%] Linking C executable mincexample2 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 [ 79%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c [ 80%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 81%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 81%] Built target minccmp make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= Scanning dependencies of target nii2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 82%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 82%] Built target mincexample2 [ 83%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&ana_hdr, sizeof (ana_hdr), 1, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Linking C executable rawtominc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 83%] Linking C executable upet2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf [ 83%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c [ 83%] Linking C executable mnc2nii cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 [ 83%] Linking C executable minccalc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf [ 83%] Built target rawtominc [ 84%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c [ 85%] Linking C executable nii2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 85%] Built target upet2mnc [ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 86%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 87%] Built target nii2mnc [ 87%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o [ 87%] Built target mnc2nii cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c [ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c [ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c [ 89%] Built target minccalc [ 90%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o [ 90%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c [ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c [ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c: In function 'check_table_integrity': /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); ~~^ ~~~~~~~~~~~~~~~~ %u /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:76: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=] (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); ~~^ ~~~~~~~~~~~~~~~~~~~ %u [ 92%] Linking C executable minctoecat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf [ 93%] Linking C executable ecattominc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 93%] Built target minctoecat make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 93%] Built target ecattominc [ 94%] Linking C static library libacr_nema.a cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 94%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= Scanning dependencies of target dcm2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 94%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c [ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/include/hdf5/serial -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(tst_str, 1, DICM_MAGIC_SIZE, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_ima_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'use_the_files': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%s", pipe_output_name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(data, 1, length, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking C executable dcm2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j10 test ARGS\+=-j10 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu Start 1: mincinfo-test Start 2: mincstats-test Start 3: mincaverage-test Start 4: minccalc-test Start 5: mincresample-test Start 6: mincreshape-test 1/6 Test #5: mincresample-test ................ Passed 0.11 sec 2/6 Test #3: mincaverage-test ................. Passed 0.14 sec 3/6 Test #2: mincstats-test ................... Passed 0.25 sec 4/6 Test #1: mincinfo-test .................... Passed 0.27 sec 5/6 Test #6: mincreshape-test ................. Passed 0.64 sec 6/6 Test #4: minccalc-test .................... Passed 0.78 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 0.81 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincinfo.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincexample1.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minccopy.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincmakevector.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincmakescalar.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincmath.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincaverage.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/voxeltoworld.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincresample.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincdump.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 10%] Built target mincinfo [ 12%] Built target voxeltoworld [ 11%] Built target mincmakescalar [ 10%] Built target mincmakevector [ 10%] Built target mincexample1 [ 12%] Built target mincmath make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend [ 10%] Built target minccopy [ 14%] Built target mincaverage make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend [ 17%] Built target mincresample make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend [ 20%] Built target mincdump make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincexpand.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincconvert.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincconcat.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/xfminvert.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minclookup.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 21%] Built target mincexpand make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minc_modify_header.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 23%] Built target mincconcat make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= [ 24%] Built target mincconvert make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincextract.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincreshape.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= [ 25%] Built target minclookup make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend [ 26%] Built target minc_modify_header make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend [ 28%] Built target xfminvert make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend [ 31%] Built target mincextract make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend [ 33%] Built target mincreshape make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincgen.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build [ 41%] Built target mincgen make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minccalc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincstats.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincwindow.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 51%] Built target minccalc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minctoraw.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 53%] Built target mincstats make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/invert_raw_image.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/transformtags.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= [ 56%] Built target mincwindow [ 57%] Built target minctoraw make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincblob.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincsample.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 59%] Built target invert_raw_image make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincmorph.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= [ 61%] Built target transformtags make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/worldtovoxel.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build [ 62%] Built target mincblob [ 64%] Built target mincsample make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/xfmconcat.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/rawtominc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 67%] Built target mincmorph make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend [ 68%] Built target worldtovoxel make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build [ 72%] Built target rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build [ 72%] Built target xfmconcat make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/mincexample2.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'progs/CMakeFiles/minccmp.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/upet2mnc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/mnc2nii.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build [ 74%] Built target upet2mnc [ 75%] Built target minccmp [ 77%] Built target mincexample2 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/ecattominc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/acr_nema.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/minctoecat.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/nii2mnc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 78%] Built target mnc2nii [ 82%] Built target ecattominc [ 89%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend [ 92%] Built target minctoecat [ 94%] Built target nii2mnc make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'conversion/CMakeFiles/dcm2mnc.dir/build'. make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdiff -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincedit -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincheader -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincview -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minchistory -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincpik -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/voxeltoworld.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincaverage.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincblob.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccalc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccmp.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccopy.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdiff.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdump.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minc-tools/usr/bin/voxeltoworld debian/minc-tools/usr/bin/minccmp debian/minc-tools/usr/bin/worldtovoxel debian/minc-tools/usr/bin/mincmakevector debian/minc-tools/usr/bin/ecattominc debian/minc-tools/usr/bin/invert_raw_image debian/minc-tools/usr/bin/mincaverage debian/minc-tools/usr/bin/mincreshape debian/minc-tools/usr/bin/mincstats debian/minc-tools/usr/bin/mincwindow debian/minc-tools/usr/bin/dcm2mnc debian/minc-tools/usr/bin/mincresample debian/minc-tools/usr/bin/nii2mnc debian/minc-tools/usr/bin/mincconvert debian/minc-tools/usr/bin/minclookup debian/minc-tools/usr/bin/mincexpand debian/minc-tools/usr/bin/minctoraw debian/minc-tools/usr/bin/upet2mnc debian/minc-tools/usr/bin/xfminvert debian/minc-tools/usr/bin/mincsample debian/minc-tools/usr/bin/mincdump debian/minc-tools/usr/bin/minctoecat debian/minc-tools/usr/bin/mincgen debian/minc-tools/usr/bin/mincextract debian/minc-tools/usr/bin/minccalc debian/minc-tools/usr/bin/rawtominc debian/minc-tools/usr/bin/mincblob debian/minc-tools/usr/bin/mincmath debian/minc-tools/usr/bin/mincmorph debian/minc-tools/usr/bin/mincinfo debian/minc-tools/usr/bin/minccopy debian/minc-tools/usr/bin/mincmakescalar debian/minc-tools/usr/bin/mnc2nii debian/minc-tools/usr/bin/minc_modify_header debian/minc-tools/usr/bin/xfmconcat debian/minc-tools/usr/bin/mincconcat debian/minc-tools/usr/bin/transformtags were not linked against librt.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minc-tools/usr/bin/voxeltoworld debian/minc-tools/usr/bin/minccmp debian/minc-tools/usr/bin/worldtovoxel debian/minc-tools/usr/bin/mincmakevector debian/minc-tools/usr/bin/ecattominc debian/minc-tools/usr/bin/invert_raw_image debian/minc-tools/usr/bin/mincaverage debian/minc-tools/usr/bin/mincreshape debian/minc-tools/usr/bin/mincstats debian/minc-tools/usr/bin/mincwindow debian/minc-tools/usr/bin/dcm2mnc debian/minc-tools/usr/bin/mincresample debian/minc-tools/usr/bin/nii2mnc debian/minc-tools/usr/bin/mincconvert debian/minc-tools/usr/bin/minclookup debian/minc-tools/usr/bin/mincexpand debian/minc-tools/usr/bin/minctoraw debian/minc-tools/usr/bin/upet2mnc debian/minc-tools/usr/bin/xfminvert debian/minc-tools/usr/bin/mincsample debian/minc-tools/usr/bin/mincdump debian/minc-tools/usr/bin/minctoecat debian/minc-tools/usr/bin/mincgen debian/minc-tools/usr/bin/mincextract debian/minc-tools/usr/bin/minccalc debian/minc-tools/usr/bin/rawtominc debian/minc-tools/usr/bin/mincblob debian/minc-tools/usr/bin/mincmath debian/minc-tools/usr/bin/mincmorph debian/minc-tools/usr/bin/mincinfo debian/minc-tools/usr/bin/minccopy debian/minc-tools/usr/bin/mincmakescalar debian/minc-tools/usr/bin/mnc2nii debian/minc-tools/usr/bin/minc_modify_header debian/minc-tools/usr/bin/xfmconcat debian/minc-tools/usr/bin/mincconcat debian/minc-tools/usr/bin/transformtags were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minc-tools/usr/bin/voxeltoworld debian/minc-tools/usr/bin/minccmp debian/minc-tools/usr/bin/worldtovoxel debian/minc-tools/usr/bin/mincmakevector debian/minc-tools/usr/bin/ecattominc debian/minc-tools/usr/bin/invert_raw_image debian/minc-tools/usr/bin/mincaverage debian/minc-tools/usr/bin/mincreshape debian/minc-tools/usr/bin/mincstats debian/minc-tools/usr/bin/mincwindow debian/minc-tools/usr/bin/dcm2mnc debian/minc-tools/usr/bin/mincresample debian/minc-tools/usr/bin/nii2mnc debian/minc-tools/usr/bin/mincconvert debian/minc-tools/usr/bin/minclookup debian/minc-tools/usr/bin/mincexpand debian/minc-tools/usr/bin/minctoraw debian/minc-tools/usr/bin/upet2mnc debian/minc-tools/usr/bin/xfminvert debian/minc-tools/usr/bin/mincsample debian/minc-tools/usr/bin/mincdump debian/minc-tools/usr/bin/minctoecat debian/minc-tools/usr/bin/mincgen debian/minc-tools/usr/bin/mincextract debian/minc-tools/usr/bin/minccalc debian/minc-tools/usr/bin/rawtominc debian/minc-tools/usr/bin/mincblob debian/minc-tools/usr/bin/mincmath debian/minc-tools/usr/bin/mincmorph debian/minc-tools/usr/bin/mincinfo debian/minc-tools/usr/bin/minccopy debian/minc-tools/usr/bin/mincmakescalar debian/minc-tools/usr/bin/mnc2nii debian/minc-tools/usr/bin/minc_modify_header debian/minc-tools/usr/bin/xfmconcat debian/minc-tools/usr/bin/mincconcat debian/minc-tools/usr/bin/transformtags were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minc-tools/usr/bin/voxeltoworld debian/minc-tools/usr/bin/minccmp debian/minc-tools/usr/bin/worldtovoxel debian/minc-tools/usr/bin/mincmakevector debian/minc-tools/usr/bin/ecattominc debian/minc-tools/usr/bin/invert_raw_image debian/minc-tools/usr/bin/mincaverage debian/minc-tools/usr/bin/mincreshape debian/minc-tools/usr/bin/mincstats debian/minc-tools/usr/bin/mincwindow debian/minc-tools/usr/bin/dcm2mnc debian/minc-tools/usr/bin/mincresample debian/minc-tools/usr/bin/nii2mnc debian/minc-tools/usr/bin/mincconvert debian/minc-tools/usr/bin/minclookup debian/minc-tools/usr/bin/mincexpand debian/minc-tools/usr/bin/minctoraw debian/minc-tools/usr/bin/upet2mnc debian/minc-tools/usr/bin/xfminvert debian/minc-tools/usr/bin/mincsample debian/minc-tools/usr/bin/mincdump debian/minc-tools/usr/bin/minctoecat debian/minc-tools/usr/bin/mincgen debian/minc-tools/usr/bin/mincextract debian/minc-tools/usr/bin/minccalc debian/minc-tools/usr/bin/rawtominc debian/minc-tools/usr/bin/mincblob debian/minc-tools/usr/bin/mincmath debian/minc-tools/usr/bin/mincmorph debian/minc-tools/usr/bin/mincinfo debian/minc-tools/usr/bin/minccopy debian/minc-tools/usr/bin/mincmakescalar debian/minc-tools/usr/bin/mnc2nii debian/minc-tools/usr/bin/minc_modify_header debian/minc-tools/usr/bin/xfmconcat debian/minc-tools/usr/bin/mincconcat debian/minc-tools/usr/bin/transformtags were not linked against libsz.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minc-tools/usr/bin/voxeltoworld debian/minc-tools/usr/bin/minccmp debian/minc-tools/usr/bin/worldtovoxel debian/minc-tools/usr/bin/mincmakevector debian/minc-tools/usr/bin/ecattominc debian/minc-tools/usr/bin/invert_raw_image debian/minc-tools/usr/bin/mincaverage debian/minc-tools/usr/bin/mincreshape debian/minc-tools/usr/bin/mincstats debian/minc-tools/usr/bin/mincwindow debian/minc-tools/usr/bin/dcm2mnc debian/minc-tools/usr/bin/mincresample debian/minc-tools/usr/bin/nii2mnc debian/minc-tools/usr/bin/mincconvert debian/minc-tools/usr/bin/minclookup debian/minc-tools/usr/bin/mincexpand debian/minc-tools/usr/bin/minctoraw debian/minc-tools/usr/bin/upet2mnc debian/minc-tools/usr/bin/xfminvert debian/minc-tools/usr/bin/mincsample debian/minc-tools/usr/bin/mincdump debian/minc-tools/usr/bin/minctoecat debian/minc-tools/usr/bin/mincgen debian/minc-tools/usr/bin/mincextract debian/minc-tools/usr/bin/minccalc debian/minc-tools/usr/bin/rawtominc debian/minc-tools/usr/bin/mincblob debian/minc-tools/usr/bin/mincmath debian/minc-tools/usr/bin/mincmorph debian/minc-tools/usr/bin/mincinfo debian/minc-tools/usr/bin/minccopy debian/minc-tools/usr/bin/mincmakescalar debian/minc-tools/usr/bin/mnc2nii debian/minc-tools/usr/bin/minc_modify_header debian/minc-tools/usr/bin/xfmconcat debian/minc-tools/usr/bin/mincconcat debian/minc-tools/usr/bin/transformtags were not linked against libdl.so.2 (they use none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-3_i386.deb'. dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32044 and its subdirectories I: Current time: Sun Jun 9 01:46:07 -12 2019 I: pbuilder-time-stamp: 1560087967 Sun Jun 9 13:46:08 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Sun Jun 9 13:46:08 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Sun Jun 9 13:46:52 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Sun Jun 9 13:46:53 UTC 2019 I: minc-tools_2.3.00+dfsg-3_i386.changes: Format: 1.8 Date: Thu, 25 Oct 2018 17:28:49 +0200 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: i386 Version: 2.3.00+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: minc-tools - MNI medical image format tools Changes: minc-tools (2.3.00+dfsg-3) unstable; urgency=medium . * Point watch file to Github * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Fix interpreter path * Depends: sensible-utils Checksums-Sha1: 956ae571d648bed6edc12bad817e347bc2328c57 839620 minc-tools-dbgsym_2.3.00+dfsg-3_i386.deb 3f3938ee07546886fb358fd098e47e19dbfb5cae 8007 minc-tools_2.3.00+dfsg-3_i386.buildinfo c42dea9f5ee3e198abb02eb725505765e34fb17b 397056 minc-tools_2.3.00+dfsg-3_i386.deb Checksums-Sha256: a005fd10659693853086af448b0b8ce318263f25653264a936bf2b771261e191 839620 minc-tools-dbgsym_2.3.00+dfsg-3_i386.deb aaaa657ae820d9569225e10bcd7b30de556048a8bcdcec7fba75edf431b9137e 8007 minc-tools_2.3.00+dfsg-3_i386.buildinfo 62a8a696d3f3a2aabfdbc2ee096c8b8f2a20857d55b5b8d2e9560495797bb529 397056 minc-tools_2.3.00+dfsg-3_i386.deb Files: c4e34cadad495337117162e1928a6b2e 839620 debug optional minc-tools-dbgsym_2.3.00+dfsg-3_i386.deb 3de0675c201c528772a115d2d7c3d40a 8007 science optional minc-tools_2.3.00+dfsg-3_i386.buildinfo 48aa0ee091c6cd48d976228fd939fdca 397056 science optional minc-tools_2.3.00+dfsg-3_i386.deb Sun Jun 9 13:46:54 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.D6rIrJt4Gz/minc-tools_2.3.00+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.D6rIrJt4Gz/minc-tools_2.3.00+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.D6rIrJt4Gz/minc-tools_2.3.00+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.D6rIrJt4Gz/b1/minc-tools_2.3.00+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.D6rIrJt4Gz/b2/minc-tools_2.3.00+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.260s) 0.260s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 10 calls diffoscope.comparators.binary.FilesystemFile Sun Jun 9 13:46:55 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Sun Jun 9 13:46:55 UTC 2019 I: minc-tools from buster built successfully and reproducibly on i386. Sun Jun 9 13:46:58 UTC 2019 I: Submitting .buildinfo files to external archives: Sun Jun 9 13:46:58 UTC 2019 I: Submitting 12K b1/minc-tools_2.3.00+dfsg-3_i386.buildinfo.asc Sun Jun 9 13:47:26 UTC 2019 I: Submitting 12K b2/minc-tools_2.3.00+dfsg-3_i386.buildinfo.asc Sun Jun 9 13:47:35 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jun 9 13:47:35 UTC 2019 I: Done submitting .buildinfo files. Sun Jun 9 13:47:35 UTC 2019 I: Removing signed minc-tools_2.3.00+dfsg-3_i386.buildinfo.asc files: removed './b1/minc-tools_2.3.00+dfsg-3_i386.buildinfo.asc' removed './b2/minc-tools_2.3.00+dfsg-3_i386.buildinfo.asc'