Mon Sep 28 07:31:34 UTC 2020 I: starting to build mrbayes/buster/i386 on jenkins on '2020-09-28 07:31' Mon Sep 28 07:31:34 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/14248/console.log Mon Sep 28 07:31:34 UTC 2020 I: Downloading source for buster/mrbayes=3.2.6+dfsg-2 --2020-09-28 07:31:34-- http://deb.debian.org/debian/pool/main/m/mrbayes/mrbayes_3.2.6+dfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2381 (2.3K) Saving to: ‘mrbayes_3.2.6+dfsg-2.dsc’ 0K .. 100% 169M=0s 2020-09-28 07:31:34 (169 MB/s) - ‘mrbayes_3.2.6+dfsg-2.dsc’ saved [2381/2381] Mon Sep 28 07:31:34 UTC 2020 I: mrbayes_3.2.6+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mrbayes Binary: mrbayes, mrbayes-mpi, mrbayes-doc Architecture: any all Version: 3.2.6+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Fernando Ribeiro , Steffen Moeller , Dominique Belhachemi , Pjotr Prins , Andreas Tille Homepage: http://mrbayes.csit.fsu.edu/ Standards-Version: 4.0.0 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/mrbayes.git Vcs-Git: https://anonscm.debian.org/git/debian-med/mrbayes.git Testsuite: autopkgtest Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake Package-List: mrbayes deb science optional arch=any mrbayes-doc deb doc extra arch=all mrbayes-mpi deb science optional arch=any Checksums-Sha1: 0e0e4f5ec54e40f6b65fce8f01d0f707fb7547b2 2644004 mrbayes_3.2.6+dfsg.orig.tar.xz eae1c80628006df6aebfda0f545d9959c55fef64 6716 mrbayes_3.2.6+dfsg-2.debian.tar.xz Checksums-Sha256: 659ebf659f15eb828b76d815d592ffeab9ab2837d8fe17e19e4a78615437addb 2644004 mrbayes_3.2.6+dfsg.orig.tar.xz f076c27a65377f6d83c7264d4bc834ad3c1027fac87b237681fe552245a58a0e 6716 mrbayes_3.2.6+dfsg-2.debian.tar.xz Files: b864279c008d2a958c34abdbc60deb77 2644004 mrbayes_3.2.6+dfsg.orig.tar.xz 5485759163be2f03f68944b3758a1a1b 6716 mrbayes_3.2.6+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAllxhYkOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEBAQ//VJ77f0AWdPaqbDkrmEOmpE19i9CiyMGjVyQ6 IMGvbF4yeaXX4F0phca8XzAkmBc6dw8Odi4ILi4aAi8DSR6mfhSri2zYLZBHJHev UHMFIULYpPYJ5rWYlD/VsZKNh9DVlffw1HpyqRPRnqeXm6wX6huGptoDrnfU+4pV 3VLHV4+APvOB5iwvWpr1nyF4HZxlSx+NXGklAw8w+TwahK3O1OuJC5rCgOYvvS+T lDjij/5bjq8zrgYbtAhXhLTUmHH6W/8v/yJQRyI3H7r8uEik0FqKoekDj22wHalU qyAy0kL7njInmfkxRisr7UBh+AGV8zN0haEBlnGB8G8s3E5Bnv+0UpNCVDHwIxIm YyDTTnWzgwZP9NnQyqjJKBv/5Pn/xpZDAWrN9uS0NkfaBeo+GTtzb1HhJt+IyP2f Dy9QtYaOT8X9oH0SijT7UcF/+kIkSsoDbX5MdyW+gOOhyGIhprze+LkUtr9cJNRv v6hMgM7p2ikFOcFGSnMvuGW+RrI+zPJ863JAqbr6NHArVbCk/DJa9KbT6MDjA7HM RJ0sfoPVsqOG6CAm/nDlte52ZzuJUpckyPPs/ZREEfljxrU++mM6z7VqFcytHwMn lEBwI2PmnXUoMchQVLGwC7FKiSnO/z8kaWFu6BaK7QgXWjbTNTdBpRnkD9WtJRjS HTS6GRk= =Kryu -----END PGP SIGNATURE----- Mon Sep 28 07:31:34 UTC 2020 I: Checking whether the package is not for us Mon Sep 28 07:31:34 UTC 2020 I: Starting 1st build on remote node profitbricks-build6-i386.debian.net. Mon Sep 28 07:31:34 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build6-i386.debian.net. Mon Sep 28 07:34:25 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 31 01:54:35 -12 2021 I: pbuilder-time-stamp: 1635688475 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mrbayes_3.2.6+dfsg-2.dsc] I: copying [./mrbayes_3.2.6+dfsg.orig.tar.xz] I: copying [./mrbayes_3.2.6+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 20 16:39:37 2017 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.6+dfsg-2.dsc dpkg-source: info: extracting mrbayes in mrbayes-3.2.6+dfsg dpkg-source: info: unpacking mrbayes_3.2.6+dfsg.orig.tar.xz dpkg-source: info: unpacking mrbayes_3.2.6+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying as-needed.patch dpkg-source: info: applying ldlibs.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45490/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='3e9ca1a9ac45449791cc851b097e96b3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45490' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/pbuilderrc_g65C --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/b1 --logfile b1/build.log mrbayes_3.2.6+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux profitbricks-build6-i386 4.19.0-11-amd64 #1 SMP Debian 4.19.146-1 (2020-09-17) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 24 02:47 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/45490/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2); however: Package libhmsbeagle-dev is not installed. Package libhmsbeagle-dev is not installed. pbuilder-satisfydepends-dummy depends on autoconf; however: Package autoconf is not installed. pbuilder-satisfydepends-dummy depends on automake; however: Package automake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} beignet-opencl-icd{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libhmsbeagle-dev{a} libhmsbeagle1v5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm7{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpsm-infinipath1{a} librdmacm1{a} libreadline-dev{a} libreadline7{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml2{a} libxshmfence1{a} libxxf86vm1{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 67.8 MB of archives. After unpacking 394 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 8 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 11 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 12 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 17 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 20 http://deb.debian.org/debian buster/main i386 openssh-client i386 1:7.9p1-10+deb10u2 [834 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 22 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 23 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 24 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 25 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 26 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libwayland-server0 i386 1.16.0-1 [33.7 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libgbm1 i386 18.3.6-2+deb10u1 [69.5 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libwayland-client0 i386 1.16.0-1 [27.0 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1+deb10u1 [190 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libxcb-xfixes0 i386 1.13.1-2 [103 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 47 http://deb.debian.org/debian buster/main i386 libegl-mesa0 i386 18.3.6-2+deb10u1 [143 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libegl1 i386 1.1.0-1 [35.3 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1+deb10u1 [778 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8+deb10u2 [13.0 MB] Get: 61 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] Get: 67 http://deb.debian.org/debian buster/main i386 beignet-opencl-icd i386 1.3.2-6+b10 [12.8 MB] Get: 68 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 69 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 72 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 73 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 79 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 80 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 81 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 82 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 83 http://deb.debian.org/debian buster/main i386 libnl-3-200 i386 3.4.0-1 [65.8 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libnl-route-3-200 i386 3.4.0-1 [170 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libibverbs1 i386 22.1-1 [53.9 kB] Get: 86 http://deb.debian.org/debian buster/main i386 ibverbs-providers i386 22.1-1 [201 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libevent-2.1-6 i386 2.1.8-stable-4 [191 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4 [137 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4 [48.1 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6 [178 kB] Get: 91 http://deb.debian.org/debian buster/main i386 librdmacm1 i386 22.1-1 [68.8 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libfabric1 i386 1.6.2-3 [364 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 94 http://deb.debian.org/debian buster/main i386 ocl-icd-libopencl1 i386 2.2.12-2 [37.2 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libhmsbeagle1v5 i386 3.1.2+dfsg-6 [168 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libhmsbeagle-dev i386 3.1.2+dfsg-6 [222 kB] Get: 97 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 98 http://deb.debian.org/debian buster/main i386 libnuma1 i386 2.0.12-1 [27.7 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libhwloc5 i386 1.11.12-3 [119 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libnuma-dev i386 2.0.12-1 [40.9 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libltdl-dev i386 2.4.6-9 [164 kB] Get: 102 http://deb.debian.org/debian buster/main i386 libhwloc-dev i386 1.11.12-3 [185 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libhwloc-plugins i386 1.11.12-3 [17.8 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libnl-3-dev i386 3.4.0-1 [107 kB] Get: 105 http://deb.debian.org/debian buster/main i386 libnl-route-3-dev i386 3.4.0-1 [193 kB] Get: 106 http://deb.debian.org/debian buster/main i386 libibverbs-dev i386 22.1-1 [385 kB] Get: 107 http://deb.debian.org/debian buster/main i386 libncurses-dev i386 6.1+20181013-2+deb10u2 [360 kB] Get: 108 http://deb.debian.org/debian buster/main i386 libpmix2 i386 3.1.2-3 [541 kB] Get: 109 http://deb.debian.org/debian buster/main i386 libopenmpi3 i386 3.1.3-11 [2236 kB] Get: 110 http://deb.debian.org/debian buster/main i386 openmpi-common all 3.1.3-11 [165 kB] Get: 111 http://deb.debian.org/debian buster/main i386 openmpi-bin i386 3.1.3-11 [200 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libopenmpi-dev i386 3.1.3-11 [963 kB] Get: 113 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB] Get: 115 http://deb.debian.org/debian buster/main i386 mpi-default-dev i386 1.13 [5476 B] Fetched 67.8 MB in 1s (52.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../006-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../009-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../012-libedit2_3.1-20181209-1_i386.deb ... Unpacking libedit2:i386 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../013-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../014-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../015-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../016-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../017-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../018-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../019-openssh-client_1%3a7.9p1-10+deb10u2_i386.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../020-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../026-libdrm-common_2.4.97-1_all.deb ... Unpacking libdrm-common (2.4.97-1) ... Selecting previously unselected package libdrm2:i386. Preparing to unpack .../027-libdrm2_2.4.97-1_i386.deb ... Unpacking libdrm2:i386 (2.4.97-1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../028-libpciaccess0_0.14-1_i386.deb ... Unpacking libpciaccess0:i386 (0.14-1) ... Selecting previously unselected package libdrm-intel1:i386. Preparing to unpack .../029-libdrm-intel1_2.4.97-1_i386.deb ... Unpacking libdrm-intel1:i386 (2.4.97-1) ... Selecting previously unselected package libglvnd0:i386. Preparing to unpack .../030-libglvnd0_1.1.0-1_i386.deb ... Unpacking libglvnd0:i386 (1.1.0-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../031-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package libwayland-server0:i386. Preparing to unpack .../032-libwayland-server0_1.16.0-1_i386.deb ... Unpacking libwayland-server0:i386 (1.16.0-1) ... Selecting previously unselected package libgbm1:i386. Preparing to unpack .../033-libgbm1_18.3.6-2+deb10u1_i386.deb ... Unpacking libgbm1:i386 (18.3.6-2+deb10u1) ... Selecting previously unselected package libglapi-mesa:i386. Preparing to unpack .../034-libglapi-mesa_18.3.6-2+deb10u1_i386.deb ... Unpacking libglapi-mesa:i386 (18.3.6-2+deb10u1) ... Selecting previously unselected package libwayland-client0:i386. Preparing to unpack .../035-libwayland-client0_1.16.0-1_i386.deb ... Unpacking libwayland-client0:i386 (1.16.0-1) ... Selecting previously unselected package libx11-xcb1:i386. Preparing to unpack .../036-libx11-xcb1_2%3a1.6.7-1+deb10u1_i386.deb ... Unpacking libx11-xcb1:i386 (2:1.6.7-1+deb10u1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../037-libxau6_1%3a1.0.8-1+b2_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../038-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../039-libxcb1_1.13.1-2_i386.deb ... Unpacking libxcb1:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-dri2-0:i386. Preparing to unpack .../040-libxcb-dri2-0_1.13.1-2_i386.deb ... Unpacking libxcb-dri2-0:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-dri3-0:i386. Preparing to unpack .../041-libxcb-dri3-0_1.13.1-2_i386.deb ... Unpacking libxcb-dri3-0:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-present0:i386. Preparing to unpack .../042-libxcb-present0_1.13.1-2_i386.deb ... Unpacking libxcb-present0:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-sync1:i386. Preparing to unpack .../043-libxcb-sync1_1.13.1-2_i386.deb ... Unpacking libxcb-sync1:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0:i386. Preparing to unpack .../044-libxcb-xfixes0_1.13.1-2_i386.deb ... Unpacking libxcb-xfixes0:i386 (1.13.1-2) ... Selecting previously unselected package libxshmfence1:i386. Preparing to unpack .../045-libxshmfence1_1.3-1_i386.deb ... Unpacking libxshmfence1:i386 (1.3-1) ... Selecting previously unselected package libegl-mesa0:i386. Preparing to unpack .../046-libegl-mesa0_18.3.6-2+deb10u1_i386.deb ... Unpacking libegl-mesa0:i386 (18.3.6-2+deb10u1) ... Selecting previously unselected package libegl1:i386. Preparing to unpack .../047-libegl1_1.1.0-1_i386.deb ... Unpacking libegl1:i386 (1.1.0-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../048-libx11-data_2%3a1.6.7-1+deb10u1_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../049-libx11-6_2%3a1.6.7-1+deb10u1_i386.deb ... Unpacking libx11-6:i386 (2:1.6.7-1+deb10u1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../050-libxext6_2%3a1.3.3-1+b2_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1+b2) ... Selecting previously unselected package libxcb-glx0:i386. Preparing to unpack .../051-libxcb-glx0_1.13.1-2_i386.deb ... Unpacking libxcb-glx0:i386 (1.13.1-2) ... Selecting previously unselected package libxfixes3:i386. Preparing to unpack .../052-libxfixes3_1%3a5.0.3-1_i386.deb ... Unpacking libxfixes3:i386 (1:5.0.3-1) ... Selecting previously unselected package libxdamage1:i386. Preparing to unpack .../053-libxdamage1_1%3a1.1.4-3+b3_i386.deb ... Unpacking libxdamage1:i386 (1:1.1.4-3+b3) ... Selecting previously unselected package libxxf86vm1:i386. Preparing to unpack .../054-libxxf86vm1_1%3a1.1.4-1+b2_i386.deb ... Unpacking libxxf86vm1:i386 (1:1.1.4-1+b2) ... Selecting previously unselected package libdrm-amdgpu1:i386. Preparing to unpack .../055-libdrm-amdgpu1_2.4.97-1_i386.deb ... Unpacking libdrm-amdgpu1:i386 (2.4.97-1) ... Selecting previously unselected package libdrm-nouveau2:i386. Preparing to unpack .../056-libdrm-nouveau2_2.4.97-1_i386.deb ... Unpacking libdrm-nouveau2:i386 (2.4.97-1) ... Selecting previously unselected package libdrm-radeon1:i386. Preparing to unpack .../057-libdrm-radeon1_2.4.97-1_i386.deb ... Unpacking libdrm-radeon1:i386 (2.4.97-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../058-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package libllvm7:i386. Preparing to unpack .../059-libllvm7_1%3a7.0.1-8+deb10u2_i386.deb ... Unpacking libllvm7:i386 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../060-libsensors-config_1%3a3.5.0-3_all.deb ... Unpacking libsensors-config (1:3.5.0-3) ... Selecting previously unselected package libsensors5:i386. Preparing to unpack .../061-libsensors5_1%3a3.5.0-3_i386.deb ... Unpacking libsensors5:i386 (1:3.5.0-3) ... Selecting previously unselected package libgl1-mesa-dri:i386. 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Unpacking mpi-default-dev (1.13) ... Setting up libexpat1:i386 (2.2.6-2+deb10u1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libwayland-server0:i386 (1.16.0-1) ... Setting up libx11-xcb1:i386 (2:1.6.7-1+deb10u1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libxau6:i386 (1:1.0.8-1+b2) ... Setting up libkeyutils1:i386 (1.6-6) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:i386 (1.1.0-1) ... Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libsensors-config (1:3.5.0-3) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.7-1+deb10u1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libsensors5:i386 (1:3.5.0-3) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libltdl7:i386 (2.4.6-9) ... Setting up libglapi-mesa:i386 (18.3.6-2+deb10u1) ... Setting up libevent-core-2.1-6:i386 (2.1.8-stable-4) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up libevent-2.1-6:i386 (2.1.8-stable-4) ... Setting up libnuma1:i386 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:i386 (2.2.12-2) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libnl-3-200:i386 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:i386 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libwayland-client0:i386 (1.16.0-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libncurses-dev:i386 (6.1+20181013-2+deb10u2) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libxcb-xfixes0:i386 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libhwloc5:i386 (1.11.12-3) ... Setting up libxcb-glx0:i386 (1.13.1-2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libreadline-dev:i386 (7.0-5) ... Setting up libhwloc-plugins:i386 (1.11.12-3) ... Setting up libnuma-dev:i386 (2.0.12-1) ... Setting up libnl-route-3-200:i386 (3.4.0-1) ... Setting up libxcb-present0:i386 (1.13.1-2) ... Setting up libxcb-sync1:i386 (1.13.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:i386 (1.13.1-2) ... Setting up libdrm2:i386 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:i386 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libllvm7:i386 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:i386 (2:1.6.7-1+deb10u1) ... Setting up libdrm-amdgpu1:i386 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.13.1-2) ... Setting up libibverbs1:i386 (22.1-1) ... Setting up libdrm-nouveau2:i386 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:i386 (3.1.2-3) ... Setting up libgbm1:i386 (18.3.6-2+deb10u1) ... Setting up ibverbs-providers:i386 (22.1-1) ... Setting up libdrm-radeon1:i386 (2.4.97-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libdrm-intel1:i386 (2.4.97-1) ... Setting up libgl1-mesa-dri:i386 (18.3.6-2+deb10u1) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:i386 (3.4.0-1) ... Setting up libltdl-dev:i386 (2.4.6-9) ... Setting up libegl-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libegl1:i386 (1.1.0-1) ... Setting up libhwloc-dev:i386 (1.11.12-3) ... Setting up librdmacm1:i386 (22.1-1) ... Setting up libxdamage1:i386 (1:1.1.4-3+b3) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:i386 (22.1-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libglx-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up libopenmpi3:i386 (3.1.3-11) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up beignet-opencl-icd:i386 (1.3.2-6+b10) ... Setting up libopenmpi-dev:i386 (3.1.3-11) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libhmsbeagle1v5 (3.1.2+dfsg-6) ... Setting up mpi-default-dev (1.13) ... Setting up libhmsbeagle-dev (3.1.2+dfsg-6) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mrbayes-3.2.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mrbayes dpkg-buildpackage: info: source version 3.2.6+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nadiya Sitdykova dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' ( cd src ; /usr/bin/make -f Makefile.in distclean ) make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' rm -f *.o *~ mb rm -rf Makefile config.log config.status config.h *.cache make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' rm -f src/configure rm -f mb mb-mpi src/mb make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_clean -O--sourcedirectory=src debian/rules build dh build --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' #Configure for MPI at first ( cd src ; autoconf ) dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes cd src && ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=yes --enable-debug=yes configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for mpicc... yes checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 32 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' # build mb-mpi (from initial config) LIBS="-Wl,--as-needed" dh_auto_build cd src && make -j1 make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c model.c: In function 'SetModelParams': model.c:18739:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (tempMult, "g_m{%d}", i+1); ^ In file included from /usr/include/stdio.h:873, from bayes.h:10, from model.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c mcmc.c: In function 'ReusePreviousResults.part.14': mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~ mcmc.c:15811:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~ mcmc.c:15265:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'RunChain': mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); ^~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c sumpt.c: In function 'DoCompRefTree': sumpt.c:4615:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=] sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); ^~ sumpt.c:4615:33: note: directive argument in the range [1, 2147483647] sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'OpenSumtFiles': sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7093:37: note: directive argument in the range [1, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7094:37: note: directive argument in the range [1, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7095:37: note: directive argument in the range [1, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7096:37: note: directive argument in the range [1, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7097:37: note: directive argument in the range [1, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'PrintBrlensToFile': sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.brlens", sumtParams.sumtOutfile); ^~ ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~ ~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~ sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.t", fileName); ^~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c mpicc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' mv src/mb ./mb-mpi # Now - build mb ( cd src ; make clean ) make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' rm -f *.o *~ mb make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes cd src && ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-beagle=/usr --enable-mpi=no --enable-debug=yes configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 32 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking LIBS="-Wl,--as-needed" dh_auto_build cd src && make -j1 make[2]: Entering directory '/build/mrbayes-3.2.6+dfsg/src' gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o model.o model.c model.c: In function 'SetModelParams': model.c:18739:48: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (tempMult, "g_m{%d}", i+1); ^ In file included from /usr/include/stdio.h:873, from bayes.h:10, from model.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16 bytes into a destination of size 15 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c mcmc.c: In function 'ReusePreviousResults.part.11': mcmc.c:15811:52: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 3 and 210 [-Wformat-overflow=] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~ mcmc.c:15811:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s%s.tree%d.run%d.t", workingDir, localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 230 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'ReopenMBPrintFiles': mcmc.c:15265:50: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 2 and 110 [-Wformat-overflow=] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~ mcmc.c:15265:36: note: directive argument in the range [1, 2147483647] sprintf (fileName, "%s.tree%d.run%d.t", localFileName, i+1, n+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 131 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmc.c: In function 'RunChain': mcmc.c:17251:46: warning: '.ss' directive writing 3 bytes into a region of size between 1 and 220 [-Wformat-overflow=] sprintf (bkupFileName,"%s.ss%d", ckpFileName,chainParams.numStepsSS-stepIndexSS); ^~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from mcmc.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 234 bytes into a destination of size 220 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o likelihood.o likelihood.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c sumpt.c: In function 'DoCompRefTree': sumpt.c:4615:40: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 7 and 126 [-Wformat-overflow=] sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); ^~ sumpt.c:4615:33: note: directive argument in the range [1, 2147483647] sprintf (inRefName, "%s.run%d.t", comptreeParams.comptFileName2, n+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 136 bytes into a destination of size 130 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'OpenSumtFiles': sumpt.c:7101:40: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7102:40: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7103:40: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7104:40: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7105:40: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7093:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7093:37: note: directive argument in the range [1, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7094:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7094:37: note: directive argument in the range [1, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7095:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7095:37: note: directive argument in the range [1, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 141 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7096:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7096:37: note: directive argument in the range [1, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7097:40: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~ sumpt.c:7097:37: note: directive argument in the range [1, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, i+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 143 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7165:32: warning: '.parts' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.parts", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7166:32: warning: '.tstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7167:32: warning: '.vstat' directive writing 6 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.vstat", sumtParams.sumtOutfile); ^~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 126 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7168:32: warning: '.con.tre' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.con.tre", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7169:32: warning: '.trprobs' directive writing 8 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.trprobs", sumtParams.sumtOutfile); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 128 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7157:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7157:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (pFilename, "%s.tree%d.parts", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7158:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7158:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (sFilename, "%s.tree%d.tstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7159:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7159:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (vFilename, "%s.tree%d.vstat", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 142 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7160:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7160:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (cFilename, "%s.tree%d.con.tre", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7161:32: warning: '.tree' directive writing 5 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~ sumpt.c:7161:29: note: directive argument in the range [-2147483647, 2147483647] sprintf (tFilename, "%s.tree%d.trprobs", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 144 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'PrintBrlensToFile': sumpt.c:7257:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.brlens", sumtParams.sumtOutfile); ^~ ~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 127 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:29: warning: '%s' directive writing up to 119 bytes into a region of size 100 [-Wformat-overflow=] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~ ~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:7255:28: note: directive argument in the range [-2147483647, 2147483647] sprintf (filename, "%s.tree%d.brlens", sumtParams.sumtOutfile, treeNo+1); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 14 and 143 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c: In function 'DoSumt': sumpt.c:4953:39: warning: '.run' directive writing 4 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~ sumpt.c:4953:36: note: directive argument in the range [-2147483647, 2147483647] sprintf (tempName, "%s.run%d.t", fileName, sumtParams.runId+1); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 137 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sumpt.c:4951:39: warning: '.t' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=] sprintf (tempName, "%s.t", fileName); ^~ In file included from /usr/include/stdio.h:873, from bayes.h:10, from sumpt.c:37: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 122 bytes into a destination of size 120 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -c -o best.o best.c gcc -g -O2 -ffile-prefix-map=/build/mrbayes-3.2.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle -DUSECONFIG_H -o mb bayes.o command.o model.o mcmc.o likelihood.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/mrbayes-3.2.6+dfsg/src' mv src/mb . make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_auto_test -O--sourcedirectory=src fakeroot debian/rules binary dh binary --sourcedirectory=src dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' echo "Do not try to install to /usr/local/bin" Do not try to install to /usr/local/bin make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installinit -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/mrbayes-3.2.6+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/mrbayes-3.2.6+dfsg' dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_strip -O--sourcedirectory=src dh_makeshlibs -O--sourcedirectory=src dh_shlibdeps -O--sourcedirectory=src dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'mrbayes-dbgsym' in '../mrbayes-dbgsym_3.2.6+dfsg-2_i386.deb'. dpkg-deb: building package 'mrbayes' in '../mrbayes_3.2.6+dfsg-2_i386.deb'. dpkg-deb: building package 'mrbayes-mpi' in '../mrbayes-mpi_3.2.6+dfsg-2_i386.deb'. dpkg-deb: building package 'mrbayes-mpi-dbgsym' in '../mrbayes-mpi-dbgsym_3.2.6+dfsg-2_i386.deb'. dpkg-deb: building package 'mrbayes-doc' in '../mrbayes-doc_3.2.6+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mrbayes_3.2.6+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45490 and its subdirectories I: Current time: Sun Oct 31 01:57:24 -12 2021 I: pbuilder-time-stamp: 1635688644 Mon Sep 28 07:34:26 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build2-i386.debian.net. Mon Sep 28 07:34:26 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build2-i386.debian.net. Mon Sep 28 07:47:29 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. Mon Sep 28 07:47:29 UTC 2020 I: mrbayes_3.2.6+dfsg-2_i386.changes: Format: 1.8 Date: Wed, 19 Jul 2017 23:40:13 -0400 Source: mrbayes Binary: mrbayes mrbayes-dbgsym mrbayes-doc mrbayes-mpi mrbayes-mpi-dbgsym Architecture: i386 all Version: 3.2.6+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nadiya Sitdykova Description: mrbayes - Bayesian Inference of Phylogeny mrbayes-doc - Bayesian Inference of Phylogeny - manual mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version Changes: mrbayes (3.2.6+dfsg-2) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * Add autopkgtest test-suite * Add tests for mb-mpi * Add missing ssh dependency for mb-mpi . [ Steffen Moeller ] * [debian/upstream/metadata] added refs to registries . [ Andreas Tille ] * cme fix dpkg-control Checksums-Sha1: 703c3eb7d1ba82e39300ec2760724e761a3217ab 914888 mrbayes-dbgsym_3.2.6+dfsg-2_i386.deb ea281d97af93036925e46ae8f6e7af6b96d8d69f 1001760 mrbayes-doc_3.2.6+dfsg-2_all.deb e291bcc82fc145d90860726f4fc4d1572e1d163e 936380 mrbayes-mpi-dbgsym_3.2.6+dfsg-2_i386.deb 6b4272f67a95f6c8778ae40543d1afe726a7a56e 595388 mrbayes-mpi_3.2.6+dfsg-2_i386.deb 3d5ee8188dbe222628f0ea75a862ad0539e88670 8098 mrbayes_3.2.6+dfsg-2_i386.buildinfo 343b68a34cf09390de630e139d59bf02cf886911 686360 mrbayes_3.2.6+dfsg-2_i386.deb Checksums-Sha256: 5bbc2ca4bfe0ea73dfdda22b942b5f861e6c6b184f40bdd7a1d05df6a1a125d4 914888 mrbayes-dbgsym_3.2.6+dfsg-2_i386.deb dcc68a5e4f7055eab31ab1e5aa69231ad54c3ab3b4726b5c8e4b1c5b276d778e 1001760 mrbayes-doc_3.2.6+dfsg-2_all.deb 4c2b63fafb9e2c81ca97613a31a99e307b00d0a137a039c2c9ce0b05390d0981 936380 mrbayes-mpi-dbgsym_3.2.6+dfsg-2_i386.deb 3bb81c1e539b23b6cb66a2257413102b848472d0d08a5311bb493a568c57ceaa 595388 mrbayes-mpi_3.2.6+dfsg-2_i386.deb 5e218cf5a50d0c32beb13a4ce5d8aabbd361f7fce1ff5c101772c0bc7d4b7859 8098 mrbayes_3.2.6+dfsg-2_i386.buildinfo cec3372f6095c5d30dbba68feaa6ebae20169e7a5c3ff003a3f7ab175b7d8ce1 686360 mrbayes_3.2.6+dfsg-2_i386.deb Files: c43d626f14aaa47f06fee200f7825180 914888 debug optional mrbayes-dbgsym_3.2.6+dfsg-2_i386.deb d6ba05a069561603ccc1c832c1fa6698 1001760 doc extra mrbayes-doc_3.2.6+dfsg-2_all.deb 2718723added9c0534718660ba36df4c 936380 debug optional mrbayes-mpi-dbgsym_3.2.6+dfsg-2_i386.deb fcf17d87937704f870fda115e1aa4a7e 595388 science optional mrbayes-mpi_3.2.6+dfsg-2_i386.deb 47565143ed19e09f58b9fa8d6208b964 8098 science optional mrbayes_3.2.6+dfsg-2_i386.buildinfo d77e7ba90bc92c47f7ad7a24d0e1c1bf 686360 science optional mrbayes_3.2.6+dfsg-2_i386.deb Mon Sep 28 07:47:31 UTC 2020 I: diffoscope 160 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/mrbayes_3.2.6+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/mrbayes_3.2.6+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/mrbayes_3.2.6+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/b1/mrbayes_3.2.6+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.Y76FB0UoMZ/b2/mrbayes_3.2.6+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.790s) 0.790s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.235s) 0.235s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Sep 28 07:47:33 UTC 2020 I: diffoscope 160 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 28 07:47:33 UTC 2020 I: mrbayes from buster built successfully and reproducibly on i386. Mon Sep 28 07:47:35 UTC 2020 I: Submitting .buildinfo files to external archives: Mon Sep 28 07:47:35 UTC 2020 I: Submitting 12K b1/mrbayes_3.2.6+dfsg-2_i386.buildinfo.asc Mon Sep 28 07:47:36 UTC 2020 I: Submitting 12K b2/mrbayes_3.2.6+dfsg-2_i386.buildinfo.asc Mon Sep 28 07:47:36 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Sep 28 07:47:36 UTC 2020 I: Done submitting .buildinfo files. Mon Sep 28 07:47:36 UTC 2020 I: Removing signed mrbayes_3.2.6+dfsg-2_i386.buildinfo.asc files: removed './b1/mrbayes_3.2.6+dfsg-2_i386.buildinfo.asc' removed './b2/mrbayes_3.2.6+dfsg-2_i386.buildinfo.asc'