Sat May 23 06:03:07 UTC 2020 I: starting to build mustang/buster/i386 on jenkins on '2020-05-23 06:02' Sat May 23 06:03:07 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/9022/console.log Sat May 23 06:03:07 UTC 2020 I: Downloading source for buster/mustang=3.2.3-3 --2020-05-23 06:03:08-- http://deb.debian.org/debian/pool/main/m/mustang/mustang_3.2.3-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2024 (2.0K) Saving to: ‘mustang_3.2.3-3.dsc’ 0K . 100% 157M=0s 2020-05-23 06:03:08 (157 MB/s) - ‘mustang_3.2.3-3.dsc’ saved [2024/2024] Sat May 23 06:03:08 UTC 2020 I: mustang_3.2.3-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mustang Binary: mustang, mustang-testdata Architecture: any all Version: 3.2.3-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://lcb.infotech.monash.edu.au/mustang/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/mustang Vcs-Git: https://salsa.debian.org/med-team/mustang.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: mustang deb science optional arch=any mustang-testdata deb science optional arch=all Checksums-Sha1: 73da7360c19c3e1cd7e227c5dce708127ecc69e0 142366 mustang_3.2.3.orig.tar.gz c18036fc53fd311a305599e55c9e462cd871fb74 30848 mustang_3.2.3-3.debian.tar.xz Checksums-Sha256: f1c8d64acc04c70e30b3128c370e485438eb38db96b1b3180d31eaa24a52704a 142366 mustang_3.2.3.orig.tar.gz 2a1496296f1042ef0dfec049ee229333df61b9cd1043060ee4d23cc9e7edac7f 30848 mustang_3.2.3-3.debian.tar.xz Files: 8ace0194a374a60dbce15fa0b1579b44 142366 mustang_3.2.3.orig.tar.gz 23376ad10f0d354f2375730f5fa7eadb 30848 mustang_3.2.3-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlrLwhsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGQGg//QmFFPkm40E1CrZpd4uJ4FsADEc579M0/ rgpCxBhNp51wgYEK9DH1cJ/JvJFqYN7CweAI+PMvri6OhB5VBkRm3RoacDDFYd4v 7GHd7VwMw3eSssnzXcxV2jBJoBYfMvaJxs8MBvMblpVVNPSGAVCXZHOQ6bonNSQn wuI3sBMzNlaak4cOSj6vwb4is++rgLf4+/fjv7gzvMxnnPPVSGDW3zljzG/8TXNS zt9YRUPM/KSKafzSoMeIiha+3lfIGSkP2EzTMZdchT6Z+0/18xRtj2aRQCFdXz6q EHrGSDEnWJrfn+8gkSHkrOee3BnD/6eUbReQkeidxGJwFfCms9hY2BJrRzGJm0Ld 09l9T9hMymiOmxifW6ODk+UATnaD+Uwf7a+gQDJixktrwqL3f2HS6F+34hRSQySy 3NPY9zFF845BByhHngTYQ6gNAphhr/nnfmesONdQDf0Q++qS+iTjhWpnA6xnmMkr L01XL7ZkQBWghbOXy8pnldloiT70GWn8BtP7Ry99TJRgTCj4+gbBPhiUKQoKPF8e nT1fsKfMbAWoJHgkv4BAgW8ISUBNbj9I3ZoiNzzfxswrXu5+1Zx5TWk6FACHOE1G jf3dYgvPFAfnq2x+VtiWepz3InqD2Pp9njkpdpNJtwNjKUT7PDNdcMJXFyPLAwmz 1ncmPgs1pIs= =8FDu -----END PGP SIGNATURE----- Sat May 23 06:03:08 UTC 2020 I: Checking whether the package is not for us Sat May 23 06:03:08 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Sat May 23 06:03:08 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Sat May 23 06:05:24 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 22 18:03:10 -12 2020 I: pbuilder-time-stamp: 1590213790 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mustang_3.2.3-3.dsc] I: copying [./mustang_3.2.3.orig.tar.gz] I: copying [./mustang_3.2.3-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 9 07:42:19 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mustang_3.2.3-3.dsc dpkg-source: info: extracting mustang in mustang-3.2.3 dpkg-source: info: unpacking mustang_3.2.3.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.4 MB in 1s (15.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mustang-3.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.3-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/mustang-3.2.3' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory '/build/mustang-3.2.3' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/mustang-3.2.3' g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/globals.cpp -o ./obj/globals.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/distmat.cpp -o ./obj/distmat.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/ew_2.cpp -o ./obj/ew.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/upgma.cpp -o ./obj/upgma.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -c ./src/main.cpp -o ./obj/main.o g++ -g -O2 -ffile-prefix-map=/build/mustang-3.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o bin/mustang-3.2.3 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory '/build/mustang-3.2.3' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/mustang-3.2.3' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory '/build/mustang-3.2.3' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/mustang-3.2.3' dh_compress -X.pdb make[1]: Leaving directory '/build/mustang-3.2.3' dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.3-3_i386.deb'. dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.3-3_all.deb'. dpkg-deb: building package 'mustang' in '../mustang_3.2.3-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mustang_3.2.3-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31125 and its subdirectories I: Current time: Fri May 22 18:05:24 -12 2020 I: pbuilder-time-stamp: 1590213924 Sat May 23 06:05:25 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Sat May 23 06:05:25 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Sat May 23 06:05:44 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Sat May 23 06:05:44 UTC 2020 I: mustang_3.2.3-3_i386.changes: Format: 1.8 Date: Mon, 09 Apr 2018 21:33:59 +0200 Source: mustang Binary: mustang mustang-dbgsym mustang-testdata Architecture: i386 all Version: 3.2.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Closes: 895299 Changes: mustang (3.2.3-3) unstable; urgency=medium . [ Helmut Grohne ] * use standard variable for the c++ compiler Closes: #895299 . [ Andreas Tille ] * Standards-Version: 4.1.4 * Point Vcs URLs to Salsa * debhelper 11 Checksums-Sha1: 6511b5e2a995d9e5775c604185ffa2600db30a78 396376 mustang-dbgsym_3.2.3-3_i386.deb 472025f2d0ad05a306e6fc98879a0e963e3ea6f0 47028 mustang-testdata_3.2.3-3_all.deb 52c3f2a6addfb493bf50981a901151eee9f5c4fd 4851 mustang_3.2.3-3_i386.buildinfo 4e61bf9d292b1ea2ac431bbdfa38bc45bcce15c3 107244 mustang_3.2.3-3_i386.deb Checksums-Sha256: dcf9b00a61fcfbf29ff52ddde6af97dc8d12327359b58ff6b30f09bdb118a83c 396376 mustang-dbgsym_3.2.3-3_i386.deb ea214fd96de137894ddc8ce4d5b788b0d10017085853c5489d3604b6ea8f1ee3 47028 mustang-testdata_3.2.3-3_all.deb 11019ab08e56837de70732e527956b5cbcffcf8867140bf9c74d64df0bd9d4e7 4851 mustang_3.2.3-3_i386.buildinfo 430a991539aebd1724b14c076eb8e30f4486998b86f301c6150fd1d29ae3fc28 107244 mustang_3.2.3-3_i386.deb Files: 22ac069d91790ed464a0ba862b78fe62 396376 debug optional mustang-dbgsym_3.2.3-3_i386.deb fe6bbf869e0b5b98fb7bbbb5c5b1ab52 47028 science optional mustang-testdata_3.2.3-3_all.deb 4850fa6a19b0085d97ba486d44e5d7e1 4851 science optional mustang_3.2.3-3_i386.buildinfo ae30c8820b306e1d7a3194493cac0611 107244 science optional mustang_3.2.3-3_i386.deb Sat May 23 06:05:45 UTC 2020 I: diffoscope 144 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.lZ1jGS1wLA/mustang_3.2.3-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.lZ1jGS1wLA/mustang_3.2.3-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.lZ1jGS1wLA/mustang_3.2.3-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.lZ1jGS1wLA/b1/mustang_3.2.3-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.lZ1jGS1wLA/b2/mustang_3.2.3-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.197s) 0.197s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 10 calls diffoscope.comparators.binary.FilesystemFile Sat May 23 06:05:48 UTC 2020 I: diffoscope 144 found no differences in the changes files, and a .buildinfo file also exists. Sat May 23 06:05:48 UTC 2020 I: mustang from buster built successfully and reproducibly on i386. Sat May 23 06:05:50 UTC 2020 I: Submitting .buildinfo files to external archives: Sat May 23 06:05:50 UTC 2020 I: Submitting 8.0K b1/mustang_3.2.3-3_i386.buildinfo.asc Sat May 23 06:05:51 UTC 2020 I: Submitting 8.0K b2/mustang_3.2.3-3_i386.buildinfo.asc Sat May 23 06:05:52 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 23 06:05:52 UTC 2020 I: Done submitting .buildinfo files. Sat May 23 06:05:52 UTC 2020 I: Removing signed mustang_3.2.3-3_i386.buildinfo.asc files: removed './b1/mustang_3.2.3-3_i386.buildinfo.asc' removed './b2/mustang_3.2.3-3_i386.buildinfo.asc'