Mon Jun 24 05:45:04 UTC 2019 I: starting to build rmatrix/buster/i386 on jenkins on '2019-06-24 05:44' Mon Jun 24 05:45:04 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_14/467/console.log Mon Jun 24 05:45:04 UTC 2019 I: Downloading source for buster/rmatrix=1.2-15-1 --2019-06-24 05:45:04-- http://deb.debian.org/debian/pool/main/r/rmatrix/rmatrix_1.2-15-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/r/rmatrix/rmatrix_1.2-15-1.dsc [following] --2019-06-24 05:45:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/rmatrix/rmatrix_1.2-15-1.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 1864 (1.8K) Saving to: ‘rmatrix_1.2-15-1.dsc’ 0K . 100% 65.1M=0s 2019-06-24 05:45:04 (65.1 MB/s) - ‘rmatrix_1.2-15-1.dsc’ saved [1864/1864] Mon Jun 24 05:45:04 UTC 2019 I: rmatrix_1.2-15-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: rmatrix Binary: r-cran-matrix Architecture: any Version: 1.2-15-1 Maintainer: Dirk Eddelbuettel Homepage: https://cran.r-project.org/package=Matrix Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/edd/r-cran-matrix Vcs-Git: https://salsa.debian.org/edd/r-cran-matrix.git Build-Depends: debhelper (>= 7.0.0), dh-r, r-base-dev (>= 3.5.1), r-cran-lattice (>= 0.12-11.1) Package-List: r-cran-matrix deb gnu-r optional arch=any Checksums-Sha1: 86f682cfecbe274c038d256dd6706f72d5d5a7a8 1861654 rmatrix_1.2-15.orig.tar.gz 5b4d37d9b2ab3a55ce83ca45f5b7b4e72fa2ef72 5472 rmatrix_1.2-15-1.debian.tar.xz Checksums-Sha256: 7b2624036cefd22948ec8c55cd0e553488cd41ec4b5174d348b046a3a28750d7 1861654 rmatrix_1.2-15.orig.tar.gz c5c2113d2e61a395bc0d9a382681140eb77988b8fadf80b684c6af40f7fba0e3 5472 rmatrix_1.2-15-1.debian.tar.xz Files: 54e25c04f2d940c60af81aa9491e083d 1861654 rmatrix_1.2-15.orig.tar.gz 2b67b75e89be10e068cbe4ea2bb25f11 5472 rmatrix_1.2-15-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIVAwUBW+OemKFIn+KrmaIaAQiNLg/+IqrHjjiOTvDp/+MMxglCk9UBlsbsmXC6 G5lv4Ajs1rVRLNZrGSpf9PdF3W4npOU7d18fJhYQLtcyQNkkBYPsLqnCw2+CbUhI h3p0MJbtVdwrAUK0U93gP0z5rN+oD/1T01UQR1ENrJ0HahkE7dqoUab/81bUh1bw piLqLv2EqKmmBC4IP8pBuPnnsIsetJlrJD9f0JAu7zLGsl+ZF6yb26/OFjLaoE98 K+1qphc+7dQelitEK05cd2Y9mgCt/5GhUu1Lklp7bzmpeGCjjzS+smNi1m1atA3H 4YWQaDmyE2rxJmKc1nTcHVBlW8CnsFFPaNWNTYHMOgcz/UKdSG5q8V21xo4t0vU1 yHVTnwO+jnEaLJUTsRwCDVNfcYtF7cPZ8tAZYpG2opS47FSeUrYqaz5O+ZCdYhuw R+vcKplcaAGipPtY4FYcpt8FBxnZSdIwRMg10A8smQAC5DSbINIJVh8KPlXkzsmU 6mP6rZEg6fbT9+nxNxoX2QCZW11aK0zuX4KxaEv6lRv1jViTNx5n4M1NXszYtmds u6U2KLCKOPkhWPAE8f42FjvA+MS3z2JZTFCtmGvxvZu7//0ijtmgQM8CAkdDbYTU LwewwA9gnYjKQaM6nl966KroLBo63FUeqG9dv6jxy8g3bYu9yvGDqzb18fIypPVP IOHxhQOEf8M= =OOpF -----END PGP SIGNATURE----- Mon Jun 24 05:45:04 UTC 2019 I: Checking whether the package is not for us Mon Jun 24 05:45:04 UTC 2019 I: Starting 1st build on remote node profitbricks-build6-i386.debian.net. Mon Jun 24 05:45:04 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build6-i386.debian.net. Mon Jun 24 05:47:08 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 26 00:08:06 -12 2020 I: pbuilder-time-stamp: 1595765286 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [rmatrix_1.2-15-1.dsc] I: copying [./rmatrix_1.2-15.orig.tar.gz] I: copying [./rmatrix_1.2-15-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 7 14:25:28 2018 -12 gpgv: using RSA key A1489FE2AB99A21A gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rmatrix_1.2-15-1.dsc dpkg-source: info: extracting rmatrix in rmatrix-1.2-15 dpkg-source: info: unpacking rmatrix_1.2-15.orig.tar.gz dpkg-source: info: unpacking rmatrix_1.2-15-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 7.0.0), dh-r, r-base-dev (>= 3.5.1), r-cran-lattice (>= 0.12-11.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev (>= 3.5.1); however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-lattice (>= 0.12-11.1); however: Package r-cran-lattice is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After unpacking 256 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 openssl i386 1.1.1c-1 [851 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 zip i386 3.0-11+b1 [242 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 unzip i386 6.0-23 [169 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.26 [20.9 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.26 [18.1 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1 [73.3 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-1 [102 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3 [394 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 66 http://cdn-fastly.deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 67 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 68 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 69 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1 [69.9 kB] Get: 70 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1 [109 kB] Get: 71 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get: 72 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3 [236 kB] Get: 73 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2 [90.3 kB] Get: 74 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 75 http://cdn-fastly.deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 76 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 77 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4 [358 kB] Get: 78 http://cdn-fastly.deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 79 http://cdn-fastly.deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 80 http://cdn-fastly.deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 81 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 82 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 83 http://cdn-fastly.deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB] Get: 84 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfribidi0 i386 1.0.5-3.1 [64.1 kB] Get: 85 http://cdn-fastly.deb.debian.org/debian buster/main i386 libthai-data all 0.1.28-2 [170 kB] Get: 86 http://cdn-fastly.deb.debian.org/debian buster/main i386 libdatrie1 i386 0.2.12-2 [40.7 kB] Get: 87 http://cdn-fastly.deb.debian.org/debian buster/main i386 libthai0 i386 0.1.28-2 [55.2 kB] Get: 88 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpango-1.0-0 i386 1.42.4-6 [191 kB] Get: 89 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 90 http://cdn-fastly.deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 91 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpangoft2-1.0-0 i386 1.42.4-6 [70.7 kB] Get: 92 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpangocairo-1.0-0 i386 1.42.4-6 [57.1 kB] Get: 93 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 94 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 95 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtcl8.6 i386 8.6.9+dfsg-2 [1065 kB] Get: 96 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 97 http://cdn-fastly.deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 98 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtiff5 i386 4.0.10-4 [268 kB] Get: 99 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxft2 i386 2.3.2-2 [58.2 kB] Get: 100 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 101 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtk8.6 i386 8.6.9-2 [809 kB] Get: 102 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 103 http://cdn-fastly.deb.debian.org/debian buster/main i386 r-base-core i386 3.5.2-1 [24.0 MB] Get: 104 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 105 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 106 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Get: 107 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB] Get: 108 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB] Get: 109 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses-dev i386 6.1+20181013-2 [360 kB] Get: 110 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses5-dev i386 6.1+20181013-2 [936 B] Get: 111 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB] Get: 112 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 113 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 114 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre16-3 i386 2:8.39-12 [258 kB] Get: 115 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre32-3 i386 2:8.39-12 [250 kB] Get: 116 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcrecpp0v5 i386 2:8.39-12 [153 kB] Get: 117 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre3-dev i386 2:8.39-12 [656 kB] Get: 118 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 119 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpng-dev i386 1.6.36-6 [310 kB] Get: 120 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbz2-dev i386 1.0.6-9 [31.2 kB] Get: 121 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblzma-dev i386 5.2.4-1 [219 kB] Get: 122 http://cdn-fastly.deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6 [196 kB] Get: 123 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6 [9374 kB] Get: 124 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxmuu1 i386 2:1.1.2-2+b3 [24.2 kB] Get: 125 http://cdn-fastly.deb.debian.org/debian buster/main i386 xauth i386 1:1.0.10-1 [40.8 kB] Get: 126 http://cdn-fastly.deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] Get: 127 http://cdn-fastly.deb.debian.org/debian buster/main i386 r-base-dev all 3.5.2-1 [4480 B] Get: 128 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://cdn-fastly.deb.debian.org/debian buster/main i386 libswitch-perl all 2.17-2 [20.5 kB] Get: 130 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-r all 20190121 [35.1 kB] Get: 131 http://cdn-fastly.deb.debian.org/debian buster/main i386 r-cran-lattice i386 0.20-38-1 [1121 kB] Fetched 88.4 MB in 3s (31.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../006-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../009-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../013-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. 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Unpacking ca-certificates (20190110) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../022-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../028-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../030-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../031-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../032-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../033-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../034-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../035-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../036-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../037-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../038-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package zip. Preparing to unpack .../039-zip_3.0-11+b1_i386.deb ... Unpacking zip (3.0-11+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../040-unzip_6.0-23_i386.deb ... Unpacking unzip (6.0-23) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../041-libpaper1_1.1.26_i386.deb ... Unpacking libpaper1:i386 (1.1.26) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../042-libpaper-utils_1.1.26_i386.deb ... Unpacking libpaper-utils (1.1.26) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../043-xdg-utils_1.1.3-1_all.deb ... Unpacking xdg-utils (1.1.3-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../044-libgfortran5_8.3.0-6_i386.deb ... Unpacking libgfortran5:i386 (8.3.0-6) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../045-libblas3_3.8.0-2_i386.deb ... Unpacking libblas3:i386 (3.8.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../046-libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../047-libpng16-16_1.6.36-6_i386.deb ... Unpacking libpng16-16:i386 (1.6.36-6) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../048-libfreetype6_2.9.1-3_i386.deb ... Unpacking libfreetype6:i386 (2.9.1-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../049-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../050-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../051-libfontconfig1_2.13.1-2_i386.deb ... Unpacking libfontconfig1:i386 (2.13.1-2) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../052-libpixman-1-0_0.36.0-1_i386.deb ... Unpacking libpixman-1-0:i386 (0.36.0-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../053-libxau6_1%3a1.0.8-1+b2_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../055-libxcb1_1.13.1-2_i386.deb ... Unpacking libxcb1:i386 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../057-libx11-6_2%3a1.6.7-1_i386.deb ... Unpacking libx11-6:i386 (2:1.6.7-1) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../058-libxcb-render0_1.13.1-2_i386.deb ... Unpacking libxcb-render0:i386 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../059-libxcb-shm0_1.13.1-2_i386.deb ... Unpacking libxcb-shm0:i386 (1.13.1-2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../060-libxext6_2%3a1.3.3-1+b2_i386.deb ... Unpacking libxext6:i386 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../061-libxrender1_1%3a0.9.10-1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../062-libcairo2_1.16.0-4_i386.deb ... Unpacking libcairo2:i386 (1.16.0-4) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../063-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../064-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../065-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../066-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../067-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../068-libsasl2-modules-db_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../069-libsasl2-2_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../070-libldap-common_2.4.47+dfsg-3_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../071-libldap-2.4-2_2.4.47+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../072-libnghttp2-14_1.36.0-2_i386.deb ... Unpacking libnghttp2-14:i386 (1.36.0-2) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../073-libpsl5_0.20.2-2_i386.deb ... Unpacking libpsl5:i386 (0.20.2-2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../074-librtmp1_2.4+20151223.gitfa8646d.1-2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../075-libssh2-1_1.8.0-2.1_i386.deb ... Unpacking libssh2-1:i386 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../076-libcurl4_7.64.0-4_i386.deb ... Unpacking libcurl4:i386 (7.64.0-4) ... Selecting previously unselected package lsb-base. Preparing to unpack .../077-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package x11-common. Preparing to unpack .../078-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libice6:i386. Preparing to unpack .../079-libice6_2%3a1.0.9-2_i386.deb ... Unpacking libice6:i386 (2:1.0.9-2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../080-libjpeg62-turbo_1%3a1.5.2-2+b1_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../081-liblapack3_3.8.0-2_i386.deb ... Unpacking liblapack3:i386 (3.8.0-2) ... Selecting previously unselected package fontconfig. 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Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-38-1) ... Setting up r-base-dev (3.5.2-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up dh-r (20190121) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/rmatrix-1.2-15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package rmatrix dpkg-buildpackage: info: source version 1.2-15-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: Matrix Version: 1.2-15 I: R package with Priority: recommended, installing in usr/lib/R/library I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Wed, 07 Nov 2018 20:23:29 -0600 mkdir -p /build/rmatrix-1.2-15/debian/r-cran-matrix/usr/lib/R/library R CMD INSTALL -l /build/rmatrix-1.2-15/debian/r-cran-matrix/usr/lib/R/library --clean . "--built-timestamp='Wed, 07 Nov 2018 20:23:29 -0600'" * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory '/build/rmatrix-1.2-15/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Csparse.c -o Csparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Mutils.c -o Mutils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chm_common.c -o chm_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cs.c -o cs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dense.c -o dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c factorizations.c -o factorizations.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ldense.c -o ldense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparseQR.c -o sparseQR.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abIndex.c -o abIndex.o make[2]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD' ( cd Lib ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' make[3]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD' ( cd Source ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD/Source' make[3]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/AMD' ( cd Source ; make clean ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/AMD/Source' make[3]: Leaving directory '/build/rmatrix-1.2-15/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/AMD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' make[2]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD' ( cd Lib ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_add.c -o cholmod_add.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_band.c -o cholmod_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_common.c -o cholmod_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_error.c -o cholmod_error.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Core/cholmod_version.c -o cholmod_version.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_check.c -o cholmod_check.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_read.c -o cholmod_read.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Check/cholmod_write.c -o cholmod_write.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD/Source' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colamd_global.c -o colamd_global.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colamd.c -o colamd.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/AMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[3]: Entering directory '/build/rmatrix-1.2-15/src/AMD/Source' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/build/rmatrix-1.2-15/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/AMD' make[2]: Entering directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNTIMER -fpic -g -O2 -fdebug-prefix-map=/build/r-base-wS4r1W/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/rmatrix-1.2-15/src' make[1]: Entering directory '/build/rmatrix-1.2-15/src' make[1]: Leaving directory '/build/rmatrix-1.2-15/src' installing to /build/rmatrix-1.2-15/debian/r-cran-matrix/usr/lib/R/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices Loading required package: Matrix ** installing vignettes Cleaning up after installing the Matrix package make[1]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD/Lib' make[1]: Leaving directory '/build/rmatrix-1.2-15/src/CHOLMOD' make[1]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-15/src/COLAMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD/Source' make[1]: Leaving directory '/build/rmatrix-1.2-15/src/COLAMD' make[1]: Entering directory '/build/rmatrix-1.2-15/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory '/build/rmatrix-1.2-15/src/AMD/Source' make[2]: Leaving directory '/build/rmatrix-1.2-15/src/AMD/Source' make[1]: Leaving directory '/build/rmatrix-1.2-15/src/AMD' make[1]: Entering directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' make[1]: Leaving directory '/build/rmatrix-1.2-15/src/SuiteSparse_config' ** testing if installed package can be loaded * DONE (Matrix) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.2.0) I: Using r-cran-expm for Suggests:expm I: Using r-cran-mass for Suggests:MASS I: Using r-cran-lattice for Imports:lattice dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/de/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/de/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/fr/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/fr/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/ko/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/pl/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/pl/LC_MESSAGES/R-Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo Normalized debian/r-cran-matrix/usr/lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-matrix/usr/lib/R/library/Matrix/libs/Matrix.so was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-matrix/usr/lib/R/library/Matrix/libs/Matrix.so was not linked against libquadmath.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: package r-cran-matrix: substitution variable ${R:Suggests} unused, but is defined dpkg-gencontrol: warning: package r-cran-matrix: substitution variable ${R:Suggests} unused, but is defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-matrix' in '../r-cran-matrix_1.2-15-1_i386.deb'. dpkg-deb: building package 'r-cran-matrix-dbgsym' in '../r-cran-matrix-dbgsym_1.2-15-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../rmatrix_1.2-15-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39428 and its subdirectories I: Current time: Sun Jul 26 00:10:07 -12 2020 I: pbuilder-time-stamp: 1595765407 Mon Jun 24 05:47:08 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Mon Jun 24 05:47:08 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Mon Jun 24 06:07:44 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Mon Jun 24 06:07:44 UTC 2019 I: rmatrix_1.2-15-1_i386.changes: Format: 1.8 Date: Wed, 07 Nov 2018 20:23:29 -0600 Source: rmatrix Binary: r-cran-matrix r-cran-matrix-dbgsym Architecture: i386 Version: 1.2-15-1 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel Changed-By: Dirk Eddelbuettel Description: r-cran-matrix - GNU R package of classes for dense and sparse matrices Changes: rmatrix (1.2-15-1) unstable; urgency=medium . * New upstream release . * debian/control: Set Build-Depends: to current R version * debian/control: Set Standards-Version: to current version Checksums-Sha1: 655ad4196e5e1bf64ccd12744ad6f60df3d51db1 722964 r-cran-matrix-dbgsym_1.2-15-1_i386.deb 6a201b073f0eeab803e80737853546458d9252a8 3435964 r-cran-matrix_1.2-15-1_i386.deb 4ff41589f8ea19199fb7091f20a970128008e024 7416 rmatrix_1.2-15-1_i386.buildinfo Checksums-Sha256: da4f3bf70333e9a1c1301c0e13b65c60a3144d35a2f321c4fdc15c180e3305b8 722964 r-cran-matrix-dbgsym_1.2-15-1_i386.deb 8728eade5cf250c683b9d89b9eba21c9f8becd320a082df723a33142ea058bcc 3435964 r-cran-matrix_1.2-15-1_i386.deb 1db14f444e1979252553bbe3a0c177e7d4ed5c3b1ed3033c1f92964c0462b8bb 7416 rmatrix_1.2-15-1_i386.buildinfo Files: daab9799b3ca2a3d0f91f9cbd933628a 722964 debug optional r-cran-matrix-dbgsym_1.2-15-1_i386.deb b475abf6f0f5f195212406ee4463342c 3435964 gnu-r optional r-cran-matrix_1.2-15-1_i386.deb 5d56d07af5e4e414c2b4ab653c474d4f 7416 gnu-r optional rmatrix_1.2-15-1_i386.buildinfo Mon Jun 24 06:07:45 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.cAD1ZxiJpg/rmatrix_1.2-15-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.cAD1ZxiJpg/rmatrix_1.2-15-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.cAD1ZxiJpg/rmatrix_1.2-15-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.cAD1ZxiJpg/b1/rmatrix_1.2-15-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.cAD1ZxiJpg/b2/rmatrix_1.2-15-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.242s) 0.242s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.043s) 0.043s 10 calls diffoscope.comparators.binary.FilesystemFile Mon Jun 24 06:07:47 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Mon Jun 24 06:07:47 UTC 2019 I: rmatrix from buster built successfully and reproducibly on i386. Mon Jun 24 06:07:49 UTC 2019 I: Submitting .buildinfo files to external archives: Mon Jun 24 06:07:49 UTC 2019 I: Submitting 12K b1/rmatrix_1.2-15-1_i386.buildinfo.asc Mon Jun 24 06:08:03 UTC 2019 I: Submitting 12K b2/rmatrix_1.2-15-1_i386.buildinfo.asc Mon Jun 24 06:08:33 UTC 2019 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Mon Jun 24 06:08:33 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jun 24 06:08:33 UTC 2019 I: Done submitting .buildinfo files. Mon Jun 24 06:08:33 UTC 2019 I: Removing signed rmatrix_1.2-15-1_i386.buildinfo.asc files: removed './b1/rmatrix_1.2-15-1_i386.buildinfo.asc' removed './b2/rmatrix_1.2-15-1_i386.buildinfo.asc'