Fri Apr 24 00:49:51 UTC 2020 I: starting to build seqtk/buster/i386 on jenkins on '2020-04-24 00:49' Fri Apr 24 00:49:51 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/4140/console.log Fri Apr 24 00:49:51 UTC 2020 I: Downloading source for buster/seqtk=1.3-1 --2020-04-24 00:49:51-- http://deb.debian.org/debian/pool/main/s/seqtk/seqtk_1.3-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1946 (1.9K) Saving to: ‘seqtk_1.3-1.dsc’ 0K . 100% 141M=0s 2020-04-24 00:49:51 (141 MB/s) - ‘seqtk_1.3-1.dsc’ saved [1946/1946] Fri Apr 24 00:49:51 UTC 2020 I: seqtk_1.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: seqtk Binary: seqtk Architecture: any Version: 1.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Brad Chapman Homepage: https://github.com/lh3/seqtk Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/seqtk Vcs-Git: https://salsa.debian.org/med-team/seqtk.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), zlib1g-dev Package-List: seqtk deb science optional arch=any Checksums-Sha1: a3b3d5b0962b82cafff5af028ca72e4d83b77426 21196 seqtk_1.3.orig.tar.gz 39b0457aa613071de917598bdcfb3af68c75a6ae 3948 seqtk_1.3-1.debian.tar.xz Checksums-Sha256: 5a1687d65690f2f7fa3f998d47c3c5037e792f17ce119dab52fff3cfdca1e563 21196 seqtk_1.3.orig.tar.gz 72a77900b9098625f2af8f4d63b6d61f59481a91fc604d4305bc807191312373 3948 seqtk_1.3-1.debian.tar.xz Files: 39a499431a10fe2412925a53ecfbab2b 21196 seqtk_1.3.orig.tar.gz 7f3fcf7624f5394581e7eea044210212 3948 seqtk_1.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAluj+DQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHoYA//eQoypq1wJHknkM5DzEA9dfK1HctdyFN8 ArOECxSGD9LDzwWcYRkxg9Vu2xqZsnahhM5cRCCb/1gJluVJ9Zy80N6L9SvudKPF fhWxsO+7N5wNGfbxS6Au6VCRSqFEsx82HdXIJPmFf7YKFodV8EFJt9rN4+o96Ael MW5rcTpBSVcN8HXnMNTwxVgokr4szipxiBaGYQ6c7o0SmEt7eo9uoCDFQhSdlwqg /ZdeDqJqEhDR768chK7DQDR00Orf7NB4QTjbTNfr9/ANr12F9ARQg+JCmjewOghJ 3rsaOud9MZ7qbaAKaOb+fuy2sp8Am+al00G0M4n6ee9rfQRB0u945v+cg4UYCrDS kJazVUF3Jr7HtnkUIz2/7dljT47yUgNjSKny/EkSmu9OBk9k5ZayG+DjZejzjnWS IJ/LmwOIFz/mRfeemydos7SIQIYKWv8pveD13bYr367hguiDXz8YWGZ3lYg+hyHN rifLNs3lyjEG5xilR0r5WshEdjvAK7WYYEYrOIBvIgtBbw2JV/8qT4tFkXYszUdM +GzanY4B+L9+604KFDY2aM2RImwVs45jjFGCFzKYbK+M7ZrJmjhZ03Pe6Z1NxjG4 oFu4+eA2DfDCJtRPOsvcfVd4bcJ8eMdl+WWB6T8YSeHYXeR16pQ8WOQyyQ8+zqCo zXPVcf8Y7G8= =Bh2H -----END PGP SIGNATURE----- Fri Apr 24 00:49:51 UTC 2020 I: Checking whether the package is not for us Fri Apr 24 00:49:51 UTC 2020 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Fri Apr 24 00:49:51 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Fri Apr 24 00:54:01 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 23 12:49:53 -12 2020 I: pbuilder-time-stamp: 1587689393 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seqtk_1.3-1.dsc] I: copying [./seqtk_1.3.orig.tar.gz] I: copying [./seqtk_1.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 20 07:42:44 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqtk_1.3-1.dsc dpkg-source: info: extracting seqtk in seqtk-1.3 dpkg-source: info: unpacking seqtk_1.3.orig.tar.gz dpkg-source: info: unpacking seqtk_1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After unpacking 70.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 19.6 MB in 6s (3020 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../33-zlib1g-dev_1%3a1.2.11.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/seqtk-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package seqtk dpkg-buildpackage: info: source version 1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/seqtk-1.3' rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session* make[1]: Leaving directory '/build/seqtk-1.3' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqtk-1.3' gcc -g -Wall -O2 -Wno-unused-function seqtk.c -o seqtk -lz -lm -Wl,-z,relro -Wl,-z,now seqtk.c: In function 'stk_comp': seqtk.c:399:16: warning: variable 'lc' set but not used [-Wunused-but-set-variable] int la, lb, lc, na, nb, nc, cnt[11]; ^~ seqtk.c: In function 'stk_subseq': seqtk.c:587:43: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(stderr, "[subseq] %s: %d >= %ld\n", seq->name.s, beg, seq->seq.l); ~~^ ~~~~~~~~~~ %d seqtk.c: In function 'stk_mergefa': seqtk.c:667:53: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); ~~^ ~~~~~~~~~~~~~ %d seqtk.c:667:60: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); ~~^ ~~~~~~~~~~~~~ %d seqtk.c: In function 'stk_famask': seqtk.c:750:53: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); ~~^ ~~~~~~~~~~~~~ %d seqtk.c:750:60: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); ~~^ ~~~~~~~~~~~~~ %d seqtk.c: In function 'stk_kfreq': seqtk.c:1563:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] printf("%s\t%ld\t%c\t%d\t%d\n", ks->name.s, ks->seq.l, "+-"[which], cnt_nei[which], cnt[which]); ~~^ ~~~~~~~~~ %d make[1]: Leaving directory '/build/seqtk-1.3' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/seqtk-1.3' echo "Ignore broken Makefile" Ignore broken Makefile make[1]: Leaving directory '/build/seqtk-1.3' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqtk-dbgsym' in '../seqtk-dbgsym_1.3-1_i386.deb'. dpkg-deb: building package 'seqtk' in '../seqtk_1.3-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqtk_1.3-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19692 and its subdirectories I: Current time: Thu Apr 23 12:54:00 -12 2020 I: pbuilder-time-stamp: 1587689640 Fri Apr 24 00:54:01 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Fri Apr 24 00:54:01 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Fri Apr 24 00:54:18 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Fri Apr 24 00:54:19 UTC 2020 I: seqtk_1.3-1_i386.changes: Format: 1.8 Date: Thu, 20 Sep 2018 21:35:35 +0200 Source: seqtk Binary: seqtk seqtk-dbgsym Architecture: i386 Version: 1.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: seqtk - Fast and lightweight tool for processing sequences in the FASTA o Changes: seqtk (1.3-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 000ec35defdc089943e9b8bf428526ff1197a7f8 53868 seqtk-dbgsym_1.3-1_i386.deb a22a1b05f4c66ea60974136fa2cbf61b5149f042 4554 seqtk_1.3-1_i386.buildinfo 11839060c5581b1ceea12602b3d833c89e3879db 33592 seqtk_1.3-1_i386.deb Checksums-Sha256: 35930b6d65a256e01375562f0d9dec96f4e99585e5e49a58d711bce15f8826ee 53868 seqtk-dbgsym_1.3-1_i386.deb 9dbaf8d671d6537b4f827523a2909bcccb5502adefec5f3ff9045926f89849ac 4554 seqtk_1.3-1_i386.buildinfo ea1d1885c0934f3af1a0e0b5117cf989f44571295c4396141602771f91bec9e0 33592 seqtk_1.3-1_i386.deb Files: 9dc3096b0a696062251f0dfc68174883 53868 debug optional seqtk-dbgsym_1.3-1_i386.deb 496a1ce6aa6a2ea76631e673df457868 4554 science optional seqtk_1.3-1_i386.buildinfo cb4c8ad244dcb4edb29a9ab0678230f4 33592 science optional seqtk_1.3-1_i386.deb Fri Apr 24 00:54:20 UTC 2020 I: diffoscope 142 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.JbWPYrVE6s/seqtk_1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.JbWPYrVE6s/seqtk_1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.JbWPYrVE6s/seqtk_1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.JbWPYrVE6s/b1/seqtk_1.3-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.JbWPYrVE6s/b2/seqtk_1.3-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.526s) 0.526s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.048s) 0.048s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Apr 24 00:54:23 UTC 2020 I: diffoscope 142 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 24 00:54:23 UTC 2020 I: seqtk from buster built successfully and reproducibly on i386. Fri Apr 24 00:54:25 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Apr 24 00:54:25 UTC 2020 I: Submitting 8.0K b1/seqtk_1.3-1_i386.buildinfo.asc Fri Apr 24 00:54:26 UTC 2020 I: Submitting 8.0K b2/seqtk_1.3-1_i386.buildinfo.asc Fri Apr 24 00:54:26 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 24 00:54:26 UTC 2020 I: Done submitting .buildinfo files. Fri Apr 24 00:54:26 UTC 2020 I: Removing signed seqtk_1.3-1_i386.buildinfo.asc files: removed './b1/seqtk_1.3-1_i386.buildinfo.asc' removed './b2/seqtk_1.3-1_i386.buildinfo.asc'