Sat May 2 09:54:09 UTC 2020 I: starting to build soapsnp/buster/i386 on jenkins on '2020-05-02 09:54' Sat May 2 09:54:09 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/4401/console.log Sat May 2 09:54:09 UTC 2020 I: Downloading source for buster/soapsnp=1.03-3 --2020-05-02 09:54:09-- http://deb.debian.org/debian/pool/main/s/soapsnp/soapsnp_1.03-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1956 (1.9K) Saving to: ‘soapsnp_1.03-3.dsc’ 0K . 100% 94.5M=0s 2020-05-02 09:54:09 (94.5 MB/s) - ‘soapsnp_1.03-3.dsc’ saved [1956/1956] Sat May 2 09:54:09 UTC 2020 I: soapsnp_1.03-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapsnp Binary: soapsnp Architecture: any Version: 1.03-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://soap.genomics.org.cn/soapsnp.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/soapsnp Vcs-Git: https://salsa.debian.org/med-team/soapsnp.git Build-Depends: debhelper (>= 11~), libboost-iostreams-dev, zlib1g-dev Package-List: soapsnp deb science optional arch=any Checksums-Sha1: f151594b5984c3c44ef2b61cebb17e0d97a7576e 38151 soapsnp_1.03.orig.tar.gz 35cc98937804934620b81bbeca8b8d95710e9061 3292 soapsnp_1.03-3.debian.tar.xz Checksums-Sha256: 68aab997285c4fece0f2900eb89df90edc7d8596fd6bc637bd922bbc8563f6d0 38151 soapsnp_1.03.orig.tar.gz f417252acb281d36e8060ce92793302b77d1bf55c931b330be5aeff034f36712 3292 soapsnp_1.03-3.debian.tar.xz Files: 8d69e196013657357ff840b611762ebc 38151 soapsnp_1.03.orig.tar.gz b4849235e63945790db500b57aa89f7d 3292 soapsnp_1.03-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwSDxkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHj1A//WlgbfAVVz3mDxMZ9AXTtnA02qqQvk9d5 DFnR6HDrQKTCOSPpN5NyHRVWkMZ1HEcrUhCalECoIYmmLT68vXRLM1uDqCWVluk+ SVKbuBRJzA5O34jT4LV6KA4qC+cE/CmQs9jyQfgeBC9uHi1aO5oMin4NKIvyJEEN ustG3c3BNiOV6hVv3RSBmlMUdw2fQeBbQuFlIhdH+7VUWxILSWblI//J17a8CU6X 0rv7s+6XcZzyOeLBTyen7FeSFkUhy0rbYxh76hCIYt6cGIjktTogG1sQGXIjmSAD Ri4cnWltsN9zhcnSHP+gFJdRem4nUtonMh5ZqyGzEqHTnKkzQeQhtjzK4mUuXqB3 5lcDiqbpsTOW/5QEggKyjGRa2ssoh97RJQ/YwCdfhjuh/g/9ZarV8go7KWehLDF1 ADm8VQ6duVLObLKDsalshYM3GAM7MRTXvTLUZO3/NbTFQjp0iWtRJ9mFkFb0sYXd K+LxbmlxIPlkbEGBPHwDqm1/MJ2E/TO3c8e8ADSD8ecPIgZb0LJLM9hdofOhOQX5 AC2jrzcpSrjgaqNfLAUdqARvDf3lOJqcQ3C3Ln8+FL6ae1sIallGQE7B0Kp1OlPy kfLqRzfOVhJ1cFv0wqKjXEHZuA+TyrOgxaeQ697qHFZz23oI8t2oKPL7iDQa6RAq q2L9enzpPFg= =Ih6M -----END PGP SIGNATURE----- Sat May 2 09:54:09 UTC 2020 I: Checking whether the package is not for us Sat May 2 09:54:09 UTC 2020 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Sat May 2 09:54:09 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Sat May 2 09:59:53 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 1 21:54:11 -12 2020 I: pbuilder-time-stamp: 1588413251 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [soapsnp_1.03-3.dsc] I: copying [./soapsnp_1.03.orig.tar.gz] I: copying [./soapsnp_1.03-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 12 19:49:45 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./soapsnp_1.03-3.dsc dpkg-source: info: extracting soapsnp in soapsnp-1.03 dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libboost-iostreams-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.67-dev{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu-dev{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 38.9 MB of archives. After unpacking 253 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6 [196 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13+deb10u1 [8388 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libboost-regex1.67.0 i386 1.67.0-13+deb10u1 [508 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6 [9374 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libboost-regex1.67-dev i386 1.67.0-13+deb10u1 [561 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libboost-iostreams1.67-dev i386 1.67.0-13+deb10u1 [258 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libboost-iostreams-dev i386 1.67.0.1 [3632 B] Get: 41 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 38.9 MB in 8s (4654 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../33-icu-devtools_63.1-6_i386.deb ... Unpacking icu-devtools (63.1-6) ... Selecting previously unselected package libboost1.67-dev:i386. Preparing to unpack .../34-libboost1.67-dev_1.67.0-13+deb10u1_i386.deb ... Unpacking libboost1.67-dev:i386 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-regex1.67.0:i386. Preparing to unpack .../35-libboost-regex1.67.0_1.67.0-13+deb10u1_i386.deb ... Unpacking libboost-regex1.67.0:i386 (1.67.0-13+deb10u1) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../36-libicu-dev_63.1-6_i386.deb ... Unpacking libicu-dev:i386 (63.1-6) ... Selecting previously unselected package libboost-regex1.67-dev:i386. Preparing to unpack .../37-libboost-regex1.67-dev_1.67.0-13+deb10u1_i386.deb ... Unpacking libboost-regex1.67-dev:i386 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-iostreams1.67-dev:i386. Preparing to unpack .../38-libboost-iostreams1.67-dev_1.67.0-13+deb10u1_i386.deb ... Unpacking libboost-iostreams1.67-dev:i386 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../39-libboost-iostreams-dev_1.67.0.1_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.67.0.1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../40-zlib1g-dev_1%3a1.2.11.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up libboost1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libicu-dev:i386 (63.1-6) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libboost-regex1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libboost-regex1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libboost-iostreams1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libboost-iostreams-dev:i386 (1.67.0.1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/soapsnp-1.03' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc g++ -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/soapsnp-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/soapsnp/usr/bin/soapsnp was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-3_i386.deb'. dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../soapsnp_1.03-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5681 and its subdirectories I: Current time: Fri May 1 21:59:52 -12 2020 I: pbuilder-time-stamp: 1588413592 Sat May 2 09:59:53 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Sat May 2 09:59:53 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Sat May 2 10:00:15 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Sat May 2 10:00:16 UTC 2020 I: soapsnp_1.03-3_i386.changes: Format: 1.8 Date: Thu, 13 Dec 2018 08:45:52 +0100 Source: soapsnp Binary: soapsnp soapsnp-dbgsym Architecture: i386 Version: 1.03-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: soapsnp - resequencing utility that can assemble consensus sequence of geno Closes: 916291 Changes: soapsnp (1.03-3) unstable; urgency=medium . * Team upload. * Build-Depends: zlib1g-dev Closes: #916291 Checksums-Sha1: 3f8d7ae5a6150f8cf81be55a5f23879d5fd5d29d 457116 soapsnp-dbgsym_1.03-3_i386.deb ea7797f892c1ae1fd326a5becbd7bff2bb2ae57a 4912 soapsnp_1.03-3_i386.buildinfo 2ee1cec849c58e9790b7582915a1865af1a677ed 46600 soapsnp_1.03-3_i386.deb Checksums-Sha256: 5fe12e21a8bd85930db3f9abaf9f17c47f64e34d8b66574e8625306883033422 457116 soapsnp-dbgsym_1.03-3_i386.deb acb4dd133d68757aa6bc7c7cd30a11e7977834f97b70e26a0a50c032ae3b99c1 4912 soapsnp_1.03-3_i386.buildinfo d70df9c50f3abfaff92dc25a0e4a5f293268fb3b0ea72d320d3b87436b159648 46600 soapsnp_1.03-3_i386.deb Files: 3f7d19903798631f5487450ae0e3379a 457116 debug optional soapsnp-dbgsym_1.03-3_i386.deb 4bff0c34a63c817b47f966f8945e8edc 4912 science optional soapsnp_1.03-3_i386.buildinfo 3a564cadf59c851227a211be1426e609 46600 science optional soapsnp_1.03-3_i386.deb Sat May 2 10:00:19 UTC 2020 I: diffoscope 143 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.En1hKu7bYC/soapsnp_1.03-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.En1hKu7bYC/soapsnp_1.03-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.En1hKu7bYC/soapsnp_1.03-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.En1hKu7bYC/b1/soapsnp_1.03-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.En1hKu7bYC/b2/soapsnp_1.03-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.295s) 1.295s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.090s) 0.090s 10 calls diffoscope.comparators.binary.FilesystemFile Sat May 2 10:00:23 UTC 2020 I: diffoscope 143 found no differences in the changes files, and a .buildinfo file also exists. Sat May 2 10:00:23 UTC 2020 I: soapsnp from buster built successfully and reproducibly on i386. Sat May 2 10:00:25 UTC 2020 I: Submitting .buildinfo files to external archives: Sat May 2 10:00:25 UTC 2020 I: Submitting 8.0K b1/soapsnp_1.03-3_i386.buildinfo.asc Sat May 2 10:00:27 UTC 2020 I: Submitting 8.0K b2/soapsnp_1.03-3_i386.buildinfo.asc Sat May 2 10:00:27 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 2 10:00:27 UTC 2020 I: Done submitting .buildinfo files. Sat May 2 10:00:27 UTC 2020 I: Removing signed soapsnp_1.03-3_i386.buildinfo.asc files: removed './b1/soapsnp_1.03-3_i386.buildinfo.asc' removed './b2/soapsnp_1.03-3_i386.buildinfo.asc'