Fri Mar 20 11:33:44 UTC 2020 I: starting to build tracetuner/buster/i386 on jenkins on '2020-03-20 11:33' Fri Mar 20 11:33:44 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/3634/console.log Fri Mar 20 11:33:44 UTC 2020 I: Downloading source for buster/tracetuner=3.0.6~beta+dfsg-1 --2020-03-20 11:33:45-- http://deb.debian.org/debian/pool/main/t/tracetuner/tracetuner_3.0.6~beta+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2044 (2.0K) Saving to: ‘tracetuner_3.0.6~beta+dfsg-1.dsc’ 0K . 100% 176M=0s 2020-03-20 11:33:45 (176 MB/s) - ‘tracetuner_3.0.6~beta+dfsg-1.dsc’ saved [2044/2044] Fri Mar 20 11:33:45 UTC 2020 I: tracetuner_3.0.6~beta+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tracetuner Binary: tracetuner Architecture: any Version: 3.0.6~beta+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sourceforge.net/projects/tracetuner/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/debian/tracetuner Vcs-Git: https://salsa.debian.org/debian/tracetuner.git Build-Depends: debhelper (>= 11), zlib1g-dev Package-List: tracetuner deb science optional arch=any Checksums-Sha1: b906dd41bad02c457fe780100f1338b8d549497a 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 851e2f357d037e7c427ee5a74cebafe1e4bd5dea 7476 tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz Checksums-Sha256: 24190cef98d7f6faaac35306c496d8fe16d72991da89d25cc589dcd5619938e0 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz cdd16ada3ef342bb4b95521f341b11d5b68f2c30a700de802dfe83b6f83cbee5 7476 tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz Files: 1662eaa5444391d0e824ee565ee3fa29 385388 tracetuner_3.0.6~beta+dfsg.orig.tar.xz 994f04fe05a3455373946856406f6f9c 7476 tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvTXw0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEMhA/9GFDQ586tjL9z8EwjkXZn36eotMaQdTyC BDEa3LdaRPKPR9lSrkL8p8IuiovUIUUXaVWHJyMoVvt1cz6CUIylUErAurr868Jd i54tbdPqYvwjLwP4t9+cDmcZMcYYnAiKCoTW5tiNXkFdOQilFxneyTSy2LyzO1gg q+g6eKAAhZ1ewNosoXWGmpafkltNh7shvlRvggUY+x/nvZTWLqAOxOXUZOyF9gE3 eBlNgiFcFBUbz2BWrVPmL/sbEdmSfVWsKPlOLTt8QpMNcn2CPl601yG25VvfjvrN 9Z+GeaEBeKjKPz+wI9PtcWkggqnpWpMvgCPX1d21qS2sJM0hkHU9AN0wvsu45s80 xvlkXFZeVsCsH24kjaKZGFOU0MX9N1FGRlO3gbRuUx2Yw30UAQ0ms2sXsRZHOldn dRofXaenTFL6NNSeK1LX3kaf8TqWoxEQ0bb5SVvurxQewn8sfep+U0YnPQ7ylFwE 4vo97n8vVLCLZvVN7PobqTU/0cMRhv5MVsRNc5JOKKM9eejEhCuDm1p6OSRNO72j Tns+FTxFiQiPgZwC31354Ge4nLi7wj4XC2vpYGgoSXKIm8PoWNEVv3ZX0d0WlGar Kl2EE7JMb1VuhsTwVOJm1iypwpiME3+GL0zFIKHeJHgB1hVDQ6NntLQ0UP83tfuZ wq6hHmX9jOU= =xvFO -----END PGP SIGNATURE----- Fri Mar 20 11:33:45 UTC 2020 I: Checking whether the package is not for us Fri Mar 20 11:33:45 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Fri Mar 20 11:33:45 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Fri Mar 20 11:36:45 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 19 23:33:48 -12 2020 I: pbuilder-time-stamp: 1584704028 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tracetuner_3.0.6~beta+dfsg-1.dsc] I: copying [./tracetuner_3.0.6~beta+dfsg.orig.tar.xz] I: copying [./tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 26 06:38:05 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tracetuner_3.0.6~beta+dfsg-1.dsc dpkg-source: info: extracting tracetuner in tracetuner-3.0.6~beta+dfsg dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg.orig.tar.xz dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_format_security.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After unpacking 70.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 19.6 MB in 2s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../33-zlib1g-dev_1%3a1.2.11.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/tracetuner-3.0.6~beta+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tracetuner dpkg-buildpackage: info: source version 3.0.6~beta+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --sourcedirectory=src --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg' dh_auto_clean cd src && make -j1 clean make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src' cd compute_qv; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' cd mktrain; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' cd mklut; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' cd mkchk; make clean make[3]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[3]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src' rm -rf lib obj rel make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg' dh_autoreconf_clean -O--sourcedirectory=src -O--no-parallel dh_clean -O--sourcedirectory=src -O--no-parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/tracetuner.substvars debian/files rm -fr -- debian/tracetuner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --sourcedirectory=src --no-parallel dh_update_autotools_config -O--sourcedirectory=src -O--no-parallel dh_autoreconf -O--sourcedirectory=src -O--no-parallel dh_auto_configure -O--sourcedirectory=src -O--no-parallel dh_auto_build -O--sourcedirectory=src -O--no-parallel cd src && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src' for dir in compute_qv mktrain mklut mkchk ; \ do (cd $dir; make EXTRACFLAGS="-g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic" LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" all); \ done make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o ../../obj/Linux/main.o main.c: In function 'main': main.c:2009:39: warning: '/tt.seq' directive writing 7 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] sprintf(multiseqsFileName, "%s/tt.seq", MultiFastaFilesDirName); ^~~~~~~ In file included from /usr/include/stdio.h:873, from main.c:25: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 1007 bytes into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:2010:39: warning: '/tt.qual' directive writing 8 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] sprintf(multiqualFileName, "%s/tt.qual", MultiFastaFilesDirName); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from main.c:25: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 1008 bytes into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:2011:39: warning: '/tt.pos' directive writing 7 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] sprintf(multilocsFileName, "%s/tt.pos", MultiFastaFilesDirName); ^~~~~~~ In file included from /usr/include/stdio.h:873, from main.c:25: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 1007 bytes into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.c:2012:39: warning: '/tt.status' directive writing 10 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] sprintf(multistatFileName, "%s/tt.status", MultiFastaFilesDirName); ^~~~~~~~~~ In file included from /usr/include/stdio.h:873, from main.c:25: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 11 and 1010 bytes into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_match_data.c -o ../../obj/Linux/Btk_match_data.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_compute_match.c -o ../../obj/Linux/Btk_compute_match.o ../mktrain/Btk_compute_match.c: In function 'find_best_region': ../mktrain/Btk_compute_match.c:658:13: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../mktrain/Btk_compute_match.c:660:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' max=i; ^~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_sw.c -o ../../obj/Linux/Btk_sw.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_indels.c -o ../../obj/Linux/Btk_process_indels.o Btk_process_indels.c: In function 'get_autocorrelation_indel_size': Btk_process_indels.c:644:42: warning: variable 'max_height' set but not used [-Wunused-but-set-variable] float *ans[NUM_COLORS], height = 0., max_height = 0.; ^~~~~~~~~~ Btk_process_indels.c:642:25: warning: variable 'best_color' set but not used [-Wunused-but-set-variable] int i, j, color, best_color, n=1; ^~~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_atod.c -o ../../obj/Linux/Btk_atod.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_qv.c -o ../../obj/Linux/Btk_compute_qv.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_call_bases.c -o ../../obj/Linux/Btk_call_bases.o Btk_call_bases.c: In function 'get_best_peak_color_and_index_by_base_and_location': Btk_call_bases.c:2988:28: warning: variable 'new_location' set but not used [-Wunused-but-set-variable] int new_peak_index, new_location = location; ^~~~~~~~~~~~ Btk_call_bases.c: In function 'call_peak_by_location_color_and_index': Btk_call_bases.c:3199:41: warning: variable 'r' set but not used [-Wunused-but-set-variable] int i = base_ind, jc = color, j, l, r, k; ^ Btk_call_bases.c: In function 'mark_called_peaks': Btk_call_bases.c:3547:28: warning: variable 'cd_length' set but not used [-Wunused-but-set-variable] int Case, cd_index, cd_length; ^~~~~~~~~ Btk_call_bases.c:3547:18: warning: variable 'cd_index' set but not used [-Wunused-but-set-variable] int Case, cd_index, cd_length; ^~~~~~~~ Btk_call_bases.c: In function 'Btk_call_bases': Btk_call_bases.c:3697:32: warning: variable 'cweight' set but not used [-Wunused-but-set-variable] double height2, nweight, cweight; ^~~~~~~ Btk_call_bases.c:3697:23: warning: variable 'nweight' set but not used [-Wunused-but-set-variable] double height2, nweight, cweight; ^~~~~~~ Btk_call_bases.c:3691:14: warning: variable 'debug' set but not used [-Wunused-but-set-variable] char *debug, base, *context=NULL; ^~~~~ At top level: Btk_call_bases.c:117:21: warning: 'gSpacEst0' defined but not used [-Wunused-const-variable=] static const double gSpacEst0 = 12.0; ^~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_raw_data.c -o ../../obj/Linux/Btk_process_raw_data.o Btk_process_raw_data.c: In function 'estimate_spacing_variation_of_shifted_peaks': Btk_process_raw_data.c:1142:26: warning: variable 'cd1' set but not used [-Wunused-but-set-variable] ColorData *cd0, *cd1; ^~~ Btk_process_raw_data.c:1142:20: warning: variable 'cd0' set but not used [-Wunused-but-set-variable] ColorData *cd0, *cd1; ^~~ Btk_process_raw_data.c: In function 'make_DP_mobility_shifts': Btk_process_raw_data.c:2299:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (DEBUG_CURTIS && options->Verbose > 2 ) ^~ Btk_process_raw_data.c:2300:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' putc('o', stderr); fflush(stderr); ^~~~~~ Btk_process_raw_data.c:2650:10: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for ( color=0; color < NUM_COLORS; color++ ) ^~~ Btk_process_raw_data.c:2652:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' fprintf(fp, " %8.3g\n", shift_err[i]); ^~~~~~~ Btk_process_raw_data.c: In function 'normalize_signals': Btk_process_raw_data.c:2956:40: warning: ordered comparison of pointer with integer zero [-Wpedantic] norm_factor[i] = (num_peaks>0) ? ave_int[i][m] : -1; ^ Btk_process_raw_data.c: In function 'make_multicomponent_iteration': Btk_process_raw_data.c:3305:21: warning: variable 'best_pos' set but not used [-Wunused-but-set-variable] int best_pos; ^~~~~~~~ Btk_process_raw_data.c:3247:15: warning: variable 'det4' set but not used [-Wunused-but-set-variable] float det4; ^~~~ Btk_process_raw_data.c: In function 'make_DP_mobility_shifts': Btk_process_raw_data.c:2567:17: warning: array subscript -1 is below array bounds of 'float[6]' [-Warray-bounds] fpoly(peaks[i]->ipos+shift_flag[color], powers-1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ POLYFIT_DEGREE+1); ~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o ../../obj/Linux/util.o util.c: In function 'mobShiftQuality': util.c:980:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count[MAX_CHUNKS]; ^~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c nr.c -o ../../obj/Linux/nr.o nr.c: In function 'gaussj': nr.c:487:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ipiv[j] != 1) ^~ nr.c:497:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ++(ipiv[icol]); ^~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_peaks.c -o ../../obj/Linux/Btk_process_peaks.o Btk_process_peaks.c: In function 'colordata_detect_peaks': Btk_process_peaks.c:524:45: warning: variable 'relative_width' set but not used [-Wunused-but-set-variable] sum_peak_width, average10_width, relative_width; ^~~~~~~~~~~~~~ Btk_process_peaks.c: In function 'add_one_peak': Btk_process_peaks.c:2307:35: warning: variable 'p2' set but not used [-Wunused-but-set-variable] Peak peak0, peak1, *p0, *p1, *p2; ^~ Btk_process_peaks.c:2307:17: warning: variable 'peak1' set but not used [-Wunused-but-set-variable] Peak peak0, peak1, *p0, *p1, *p2; ^~~~~ Btk_process_peaks.c:2307:10: warning: variable 'peak0' set but not used [-Wunused-but-set-variable] Peak peak0, peak1, *p0, *p1, *p2; ^~~~~ Btk_process_peaks.c: In function 'fit_single_peak': Btk_process_peaks.c:2651:45: warning: variable 'x2' set but not used [-Wunused-but-set-variable] double sum_exp = 0., sum_exp2 = 0., x2, B; ^~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_io.c -o ../../obj/Linux/Btk_qv_io.o Btk_qv_io.c: In function 'Btk_read_sample_file': Btk_qv_io.c:770:46: warning: ordered comparison of pointer with integer zero [-Wpedantic] if ((options.inp_phd == 0) && (num_bases > 0)) { ^ Btk_qv_io.c:649:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magic, 1, 2, fp); ^~~~~~~~~~~~~~~~~~~~~~ Btk_qv_io.c:910:36: warning: '%s' directive writing up to 1023 bytes into a region of size between 744 and 999 [-Wformat-overflow=] sprintf(phd_file_name, "%s/%s.phd.1", ^~ options.inp_phd_dir, tempFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from Btk_qv_io.c:27: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 1286 bytes into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tp.c -o ../../obj/Linux/Btk_compute_tp.o Btk_compute_tp.c: In function 'get_peak_height_ratio': Btk_compute_tp.c:340:58: warning: variable 'bad_ipos' set but not used [-Wunused-but-set-variable] double max_uncalled_ipos = -1, min_called_ipos = -1, bad_ipos; ^~~~~~~~ Btk_compute_tp.c: In function 'get_peak_spacing_ratio': Btk_compute_tp.c:394:17: warning: variable 'bad_ipos' set but not used [-Wunused-but-set-variable] double psr, bad_ipos, ipos; ^~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tpars.c -o ../../obj/Linux/Btk_compute_tpars.o Btk_compute_tpars.c: In function 'data_create': Btk_compute_tpars.c:215:33: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] (void)memset(data, 0, sizeof(data)); ^ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_get_mixed_bases.c -o ../../obj/Linux/Btk_get_mixed_bases.o Btk_get_mixed_bases.c: In function 'mixed_base': Btk_get_mixed_bases.c:142:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (((b1 == 'G') && (b2 == 'T')) || ((b1 == 'T') && (b2 == 'G'))) ^~ Btk_get_mixed_bases.c:145:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return 'N'; ^~~~~~ Btk_get_mixed_bases.c: In function 'find_alternative_peaks': Btk_get_mixed_bases.c:473:34: warning: ordered comparison of pointer with integer zero [-Wpedantic] if ((num_peaks_found > 0) && ^ Btk_get_mixed_bases.c: In function 'call_mixed_bases': Btk_get_mixed_bases.c:744:55: warning: variable 'cweight' set but not used [-Wunused-but-set-variable] double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; ^~~~~~~ Btk_get_mixed_bases.c:744:43: warning: variable 'nweight' set but not used [-Wunused-but-set-variable] double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; ^~~~~~~ Btk_get_mixed_bases.c:740:24: warning: variable 'pos' set but not used [-Wunused-but-set-variable] int i, j, k, n, pos, jbest, kbest, curr_num2, prev_right_bound=0; ^~~ Btk_get_mixed_bases.c:739:25: warning: variable 'context' set but not used [-Wunused-but-set-variable] char base, base2,*context = NULL; ^~~~~~~ Btk_get_mixed_bases.c:739:18: warning: variable 'base2' set but not used [-Wunused-but-set-variable] char base, base2,*context = NULL; ^~~~~ Btk_get_mixed_bases.c:739:12: warning: variable 'base' set but not used [-Wunused-but-set-variable] char base, base2,*context = NULL; ^~~~ Btk_get_mixed_bases.c: In function 'Btk_get_mixed_bases': Btk_get_mixed_bases.c:1365:31: warning: variable 'res' set but not used [-Wunused-but-set-variable] double ratio, wratio, res, w1, w2; ^~~ Btk_get_mixed_bases.c:1365:23: warning: variable 'wratio' set but not used [-Wunused-but-set-variable] double ratio, wratio, res, w1, w2; ^~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_lookup_table.c -o ../../obj/Linux/Btk_lookup_table.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_funs.c -o ../../obj/Linux/Btk_qv_funs.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ABI_Toolkit.c -o ../../obj/Linux/ABI_Toolkit.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_default_table.c -o ../../obj/Linux/Btk_default_table.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c FileHandler.c -o ../../obj/Linux/FileHandler.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c SCF_Toolkit.c -o ../../obj/Linux/SCF_Toolkit.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c context_table.c -o ../../obj/Linux/context_table.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c tracepoly.c -o ../../obj/Linux/tracepoly.o tracepoly.c: In function 'gaussj': tracepoly.c:631:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ipiv[j] != 1) ^~ tracepoly.c:641:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ++(ipiv[icol]); ^~ tracepoly.c: In function 'func_legendre_1based': tracepoly.c:137:9: warning: array subscript -1 is below array bounds of 'double[3]' [-Warray-bounds] func_legendre_1based_sub( fa, x, ptemp0-1, n ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c: In function 'traceGetCoef.isra.5': tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ func_legendre_1based); ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] tracepoly.c:790:5: warning: array subscript -1 is below array bounds of 'double[8000]' [-Warray-bounds] tracepoly.c: In function 'traceEvalPoly': tracepoly.c:153:5: warning: array subscript -1 is below array bounds of 'double[2]' [-Warray-bounds] func_legendre_1based( fa, x, pl-1, nl ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar rc ../../lib/Linux/libtt.a ../../obj/Linux/Btk_match_data.o ../../obj/Linux/Btk_compute_match.o ../../obj/Linux/Btk_sw.o ../../obj/Linux/Btk_process_indels.o ../../obj/Linux/Btk_atod.o ../../obj/Linux/Btk_compute_qv.o ../../obj/Linux/Btk_call_bases.o ../../obj/Linux/Btk_process_raw_data.o ../../obj/Linux/util.o ../../obj/Linux/nr.o ../../obj/Linux/Btk_process_peaks.o ../../obj/Linux/Btk_qv_io.o ../../obj/Linux/Btk_compute_tp.o ../../obj/Linux/Btk_compute_tpars.o ../../obj/Linux/Btk_get_mixed_bases.o ../../obj/Linux/Btk_lookup_table.o ../../obj/Linux/Btk_qv_funs.o ../../obj/Linux/ABI_Toolkit.o ../../obj/Linux/Btk_default_table.o ../../obj/Linux/FileHandler.o ../../obj/Linux/SCF_Toolkit.o ../../obj/Linux/context_table.o ../../obj/Linux/tracepoly.o /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux/main.o ../../lib/Linux/libtt.a -lm -o ../../rel/Linux/ttuner -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/compute_qv' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train.c -o ../../obj/Linux/train.o train.c: In function 'main': train.c:1047:59: warning: '%s' directive writing up to 999 bytes into a region of size 227 [-Wformat-overflow=] sprintf(message->text, "Unable to open project file '%s'\n", ^~ In file included from /usr/include/stdio.h:873, from train.c:33: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 32 and 1031 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train_data.c -o ../../obj/Linux/train_data.o train_data.c: In function 'append_to_train_data': train_data.c:217:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (Verbose > 0) ^~ train_data.c:220:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' fprintf(fout, "# Clear range start :%4d end:%4d\n", ^~~~~~~ /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux/train.o ../../obj/Linux/train_data.o ../../obj/Linux/Btk_compute_match.o ../../obj/Linux/Btk_match_data.o ../../obj/Linux/Btk_sw.o ../../lib/Linux/libtt.a -lm -o ../../rel/Linux/train -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c trainphd.c -o ../../obj/Linux/trainphd.o trainphd.c: In function 'process_projectfile': trainphd.c:653:13: warning: variable 'buffer2' set but not used [-Wunused-but-set-variable] char buffer2[BUFLEN]; ^~~~~~~ trainphd.c: In function 'main': trainphd.c:931:35: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:940:35: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:959:39: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:967:39: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1011:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1018:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1084:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1091:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1123:35: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1128:35: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1134:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:1139:33: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, message.text); ~~~~~~~^~~~~ trainphd.c:665:62: warning: '%s' directive writing up to 999 bytes into a region of size 227 [-Wformat-overflow=] sprintf(message->text, "Unable to open project file '%s'\n", ^~ In file included from /usr/include/stdio.h:873, from trainphd.c:36: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 32 and 1031 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: some warnings being treated as errors make[2]: *** [../include.mk:180: ../../obj/Linux/trainphd.o] Error 1 make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mktrain' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c lut.c -o ../../obj/Linux/lut.o lut.c: In function 'read_bases_and_populate_bins': lut.c:438:26: warning: variable 'cchar' set but not used [-Wunused-but-set-variable] char schar, cchar; /* Sample and consensus characters. */ ^~~~~ lut.c:437:25: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ lut.c:437:19: warning: variable 'spos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ lut.c: In function 'create_qv_table_via_dynamic_programming': lut.c:894:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (i = 1; i < (MAX_QV / 10); i++) ^~~ lut.c:899:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' fprintf(fout, "\n"); ^~~~~~~ lut.c: In function 'compress_params_array': lut.c:1012:13: warning: variable 'max_weight' set but not used [-Wunused-but-set-variable] int max_weight=0, *wn; ^~~~~~~~~~ lut.c: In function 'read_and_sort_trace_parameters': lut.c:1112:21: warning: variable 'cchar' set but not used [-Wunused-but-set-variable] char schar, cchar; /* Sample and consensus characters. */ ^~~~~ lut.c:1111:20: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ lut.c:1111:14: warning: variable 'spos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ lut.c: In function 'main': lut.c:1404:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] t1 = time((time_t) NULL); ^ In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' extern time_t time (time_t *__timer) __THROW; ~~~~~~~~^~~~~~~ lut.c:1449:34: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] sscanf(optarg, "%d", &threshold_count); ~^ ~~~~~~~~~~~~~~~~ %d lut.c:1520:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] t2 = time((time_t) NULL); ^ In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' extern time_t time (time_t *__timer) __THROW; ~~~~~~~~^~~~~~~ lut.c:1573:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] t2 = time((time_t) NULL); ^ In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' extern time_t time (time_t *__timer) __THROW; ~~~~~~~~^~~~~~~ lut.c:1604:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] t2 = time((time_t) NULL); ^ In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' extern time_t time (time_t *__timer) __THROW; ~~~~~~~~^~~~~~~ lut.c:1645:15: warning: passing argument 1 of 'time' makes pointer from integer without a cast [-Wint-conversion] t2 = time((time_t) NULL); ^ In file included from lut.c:45: /usr/include/time.h:75:29: note: expected 'time_t *' {aka 'long int *'} but argument is of type 'long int' extern time_t time (time_t *__timer) __THROW; ~~~~~~~~^~~~~~~ mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c select.c -o ../../obj/Linux/select.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c func_name.c -o ../../obj/Linux/func_name.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c get_thresholds.c -o ../../obj/Linux/get_thresholds.o mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mkchk/check_data.c -o ../../obj/Linux/check_data.o ../mkchk/check_data.c: In function 'get_bases': ../mkchk/check_data.c:47:25: warning: variable 'cpos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ ../mkchk/check_data.c:47:19: warning: variable 'spos' set but not used [-Wunused-but-set-variable] int spos, cpos; /* Sample and consensus positions. */ ^~~~ g++ ../../obj/Linux/lut.o ../../obj/Linux/select.o ../../obj/Linux/func_name.o ../../obj/Linux/get_thresholds.o ../../obj/Linux/check_data.o -o ../../rel/Linux/lut -lm -lz ../../lib/Linux/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mklut' make[2]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbc.c -o ../../obj/Linux/checkbc.o g++ ../../obj/Linux/checkbc.o ../../obj/Linux/check_data.o ../../lib/Linux/libtt.a -lm -lz -o ../../rel/Linux/checkbc -lm -lz ../../lib/Linux/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqv.c -o ../../obj/Linux/checkqv.o checkqv.c: In function 'crossValidate': checkqv.c:84:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (base[i].schar != '-') ^~ checkqv.c:87:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' qv = get_quality_value(base[i].parameter[0], ^~ g++ ../../obj/Linux/checkqv.o ../../obj/Linux/check_data.o ../../lib/Linux/libtt.a -lm -lz -o ../../rel/Linux/checkqv -lm -lz ../../lib/Linux/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbcphd.c -o ../../obj/Linux/checkbcphd.o checkbcphd.c: In function 'errorStatswithQVs': checkbcphd.c:197:18: warning: unknown escape sequence: '\%' char c = '\%'; ^~~~ checkbcphd.c:50:51: warning: variable 'qvo' set but not used [-Wunused-but-set-variable] Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; ^~~ checkbcphd.c:50:32: warning: variable 'qvp' set but not used [-Wunused-but-set-variable] Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; ^~~ g++ ../../obj/Linux/checkbcphd.o ../../obj/Linux/check_data.o ../../lib/Linux/libtt.a -lm -lz -o ../../rel/Linux/checkbcphd -lm -lz ../../lib/Linux/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -ffile-prefix-map=/build/tracetuner-3.0.6~beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqvphd.c -o ../../obj/Linux/checkqvphd.o g++ ../../obj/Linux/checkqvphd.o ../../obj/Linux/check_data.o ../../lib/Linux/libtt.a -lm -lz -o ../../rel/Linux/checkqvphd -lm -lz ../../lib/Linux/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src/mkchk' make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg/src' dh_auto_test -O--sourcedirectory=src -O--no-parallel create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --sourcedirectory=src --no-parallel dh_testroot -O--sourcedirectory=src -O--no-parallel dh_prep -O--sourcedirectory=src -O--no-parallel rm -f -- debian/tracetuner.substvars rm -fr -- debian/.debhelper/generated/tracetuner/ debian/tracetuner/ debian/tmp/ dh_installdirs -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/build/tracetuner-3.0.6~beta+dfsg' dh_auto_install find rel -mindepth 2 -type f | xargs -r mv --target-directory=/build/tracetuner-3.0.6~beta+dfsg/debian/tracetuner/usr/bin/ make[1]: Leaving directory '/build/tracetuner-3.0.6~beta+dfsg' dh_installdocs -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/doc/tracetuner install -d debian/.debhelper/generated/tracetuner cp --reflink=auto -a ./src/README debian/tracetuner/usr/share/doc/tracetuner cp --reflink=auto -a ./doc/RELEASE_NOTES debian/tracetuner/usr/share/doc/tracetuner chown -R 0:0 debian/tracetuner/usr/share/doc chmod -R u\+rw,go=rX debian/tracetuner/usr/share/doc install -p -m0644 debian/README.Debian debian/tracetuner/usr/share/doc/tracetuner/README.Debian install -p -m0644 debian/copyright debian/tracetuner/usr/share/doc/tracetuner/copyright dh_installchangelogs -O--sourcedirectory=src -O--no-parallel install -p -m0644 debian/changelog debian/tracetuner/usr/share/doc/tracetuner/changelog.Debian dh_installman -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/train.1 debian/tracetuner/usr/share/man/man1/train.1 install -p -m0644 ./debian/mans/trainphd.1 debian/tracetuner/usr/share/man/man1/trainphd.1 install -p -m0644 ./debian/mans/ttuner.1 debian/tracetuner/usr/share/man/man1/ttuner.1 man -l --recode UTF-8 ./debian/tracetuner/usr/share/man/man1/train.1 > debian/tracetuner/usr/share/man/man1/train.1.dh-new man -l --recode UTF-8 ./debian/tracetuner/usr/share/man/man1/ttuner.1 > debian/tracetuner/usr/share/man/man1/ttuner.1.dh-new man -l --recode UTF-8 ./debian/tracetuner/usr/share/man/man1/trainphd.1 > debian/tracetuner/usr/share/man/man1/trainphd.1.dh-new mv debian/tracetuner/usr/share/man/man1/trainphd.1.dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/trainphd.1 mv debian/tracetuner/usr/share/man/man1/ttuner.1.dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/ttuner.1 mv debian/tracetuner/usr/share/man/man1/train.1.dh-new debian/tracetuner/usr/share/man/man1/train.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/train.1 dh_installinit -O--sourcedirectory=src -O--no-parallel dh_perl -O--sourcedirectory=src -O--no-parallel dh_link -O--sourcedirectory=src -O--no-parallel dh_strip_nondeterminism -O--sourcedirectory=src -O--no-parallel dh_compress -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner chmod a-x usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 gzip -9nf usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 cd '/build/tracetuner-3.0.6~beta+dfsg' dh_fixperms -O--sourcedirectory=src -O--no-parallel find debian/tracetuner -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tracetuner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tracetuner/usr/share/doc -type f -a -true -a ! -regex 'debian/tracetuner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tracetuner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--sourcedirectory=src -O--no-parallel dh_strip -O--sourcedirectory=src -O--no-parallel install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/train debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e7/02f0e190e39ff388c15e02eca3158a425f3927.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e7/02f0e190e39ff388c15e02eca3158a425f3927.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e7/02f0e190e39ff388c15e02eca3158a425f3927.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/train objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e7/02f0e190e39ff388c15e02eca3158a425f3927.debug debian/tracetuner/usr/bin/train install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqvphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/b6/e19641d0cd7a29e611ea0efea76779c4b58d88.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/b6/e19641d0cd7a29e611ea0efea76779c4b58d88.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/b6/e19641d0cd7a29e611ea0efea76779c4b58d88.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqvphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/b6/e19641d0cd7a29e611ea0efea76779c4b58d88.debug debian/tracetuner/usr/bin/checkqvphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqv debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/af/d080ed4d384d8aab688ee903d8f8f7991b75b2.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/af/d080ed4d384d8aab688ee903d8f8f7991b75b2.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/af/d080ed4d384d8aab688ee903d8f8f7991b75b2.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqv objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/af/d080ed4d384d8aab688ee903d8f8f7991b75b2.debug debian/tracetuner/usr/bin/checkqv install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbcphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4c/e4ff69402344033c42149ce2ad22575a9e3135.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4c/e4ff69402344033c42149ce2ad22575a9e3135.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4c/e4ff69402344033c42149ce2ad22575a9e3135.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbcphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/4c/e4ff69402344033c42149ce2ad22575a9e3135.debug debian/tracetuner/usr/bin/checkbcphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/dc objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbc debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/dc/44b2dea1e676da06a30c4ad5df7f47576de831.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/dc/44b2dea1e676da06a30c4ad5df7f47576de831.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/dc/44b2dea1e676da06a30c4ad5df7f47576de831.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbc objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/dc/44b2dea1e676da06a30c4ad5df7f47576de831.debug debian/tracetuner/usr/bin/checkbc install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/lut debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/6e/952404677e5971f11029519c9ec391c6aa9052.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/6e/952404677e5971f11029519c9ec391c6aa9052.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/6e/952404677e5971f11029519c9ec391c6aa9052.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/lut objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/6e/952404677e5971f11029519c9ec391c6aa9052.debug debian/tracetuner/usr/bin/lut install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/ttuner debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/24c804b1a7c8bb1c971ebdea4f12197071f7b0.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/24c804b1a7c8bb1c971ebdea4f12197071f7b0.debug chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/24c804b1a7c8bb1c971ebdea4f12197071f7b0.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/ttuner objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/ad/24c804b1a7c8bb1c971ebdea4f12197071f7b0.debug debian/tracetuner/usr/bin/ttuner install -d debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc ln -s tracetuner debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc/tracetuner-dbgsym dh_makeshlibs -O--sourcedirectory=src -O--no-parallel rm -f debian/tracetuner/DEBIAN/shlibs dh_shlibdeps -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/DEBIAN dpkg-shlibdeps -Tdebian/tracetuner.substvars debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/ttuner dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkqvphd were not linked against libz.so.1 (they use none of the library's symbols) dh_installdeb -O--sourcedirectory=src -O--no-parallel dh_gencontrol -O--sourcedirectory=src -O--no-parallel echo misc:Depends= >> debian/tracetuner.substvars echo misc:Pre-Depends= >> debian/tracetuner.substvars install -d debian/.debhelper/tracetuner/dbgsym-root/DEBIAN dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/.debhelper/tracetuner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=tracetuner-dbgsym "-DDepends=tracetuner (= \${binary:Version})" "-DDescription=debug symbols for tracetuner" "-DBuild-Ids=4ce4ff69402344033c42149ce2ad22575a9e3135 6e952404677e5971f11029519c9ec391c6aa9052 ad24c804b1a7c8bb1c971ebdea4f12197071f7b0 afd080ed4d384d8aab688ee903d8f8f7991b75b2 b6e19641d0cd7a29e611ea0efea76779c4b58d88 dc44b2dea1e676da06a30c4ad5df7f47576de831 e702f0e190e39ff388c15e02eca3158a425f3927" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/tracetuner -UMulti-Arch chmod 0644 -- debian/tracetuner/DEBIAN/control chown 0:0 -- debian/tracetuner/DEBIAN/control dh_md5sums -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tracetuner/DEBIAN/md5sums chown 0:0 -- debian/tracetuner/DEBIAN/md5sums cd debian/.debhelper/tracetuner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--sourcedirectory=src -O--no-parallel dpkg-deb --build debian/.debhelper/tracetuner/dbgsym-root .. dpkg-deb --build debian/tracetuner .. dpkg-deb: building package 'tracetuner-dbgsym' in '../tracetuner-dbgsym_3.0.6~beta+dfsg-1_i386.deb'. dpkg-deb: building package 'tracetuner' in '../tracetuner_3.0.6~beta+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tracetuner_3.0.6~beta+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9556 and its subdirectories I: Current time: Thu Mar 19 23:36:45 -12 2020 I: pbuilder-time-stamp: 1584704205 Fri Mar 20 11:36:46 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Fri Mar 20 11:36:46 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Fri Mar 20 11:37:20 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Fri Mar 20 11:37:20 UTC 2020 I: tracetuner_3.0.6~beta+dfsg-1_i386.changes: Format: 1.8 Date: Fri, 26 Oct 2018 20:36:33 +0200 Source: tracetuner Binary: tracetuner tracetuner-dbgsym Architecture: i386 Version: 3.0.6~beta+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tracetuner - interpretation of DNA Sanger sequencing data Closes: 911850 Changes: tracetuner (3.0.6~beta+dfsg-1) unstable; urgency=medium . * Team upload * Initial release (Closes: #911850) Checksums-Sha1: 0c1908973d2e7fc95a6a9b7ee167fdfe954e8ec5 1124408 tracetuner-dbgsym_3.0.6~beta+dfsg-1_i386.deb f591dc36fd40d5e95d0313c1723c99dc0c411acf 4704 tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo c816dba1fba62615b28c6c4ca3ffc44f8d4447f9 345988 tracetuner_3.0.6~beta+dfsg-1_i386.deb Checksums-Sha256: 67befa009805222f78e273e570663f62d57ecc3cdea11685dd2d35293da8949b 1124408 tracetuner-dbgsym_3.0.6~beta+dfsg-1_i386.deb 3979d732e2815d175d493bff9ca31c008d299d137cff9bd9ab37a092823ad8f3 4704 tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo 14a7fcfbc644cf3925610c62659ef4cd3c4ceaa158a3db68ade6c1dd382f0919 345988 tracetuner_3.0.6~beta+dfsg-1_i386.deb Files: e214e6d6ba5475f6ee6e9070db5b2cdc 1124408 debug optional tracetuner-dbgsym_3.0.6~beta+dfsg-1_i386.deb 26c63e84efff1342c69d17f6eaa89570 4704 science optional tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo 036d2391aec6cf236f040a26fdfcb71c 345988 science optional tracetuner_3.0.6~beta+dfsg-1_i386.deb Fri Mar 20 11:37:22 UTC 2020 I: diffoscope 137 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.wfZRLlEnsV/tracetuner_3.0.6~beta+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.wfZRLlEnsV/tracetuner_3.0.6~beta+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.wfZRLlEnsV/tracetuner_3.0.6~beta+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.wfZRLlEnsV/b1/tracetuner_3.0.6~beta+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.wfZRLlEnsV/b2/tracetuner_3.0.6~beta+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.208s) 0.208s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Mar 20 11:37:28 UTC 2020 I: diffoscope 137 found no differences in the changes files, and a .buildinfo file also exists. Fri Mar 20 11:37:28 UTC 2020 I: tracetuner from buster built successfully and reproducibly on i386. Fri Mar 20 11:37:29 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Mar 20 11:37:29 UTC 2020 I: Submitting 8.0K b1/tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo.asc Fri Mar 20 11:37:30 UTC 2020 I: Submitting 8.0K b2/tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo.asc Fri Mar 20 11:37:31 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Mar 20 11:37:31 UTC 2020 I: Done submitting .buildinfo files. Fri Mar 20 11:37:31 UTC 2020 I: Removing signed tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo.asc files: removed './b1/tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo.asc' removed './b2/tracetuner_3.0.6~beta+dfsg-1_i386.buildinfo.asc'