Mon Mar 24 18:50:11 UTC 2025 I: starting to build flexbar/experimental/amd64 on jenkins on '2025-03-24 18:50' Mon Mar 24 18:50:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/48338/console.log Mon Mar 24 18:50:11 UTC 2025 I: Downloading source for experimental/flexbar=1:3.5.0-6 --2025-03-24 18:50:11-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/flexbar/flexbar_3.5.0-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2037 (2.0K) [text/prs.lines.tag] Saving to: ‘flexbar_3.5.0-6.dsc’ 0K . 100% 254M=0s 2025-03-24 18:50:11 (254 MB/s) - ‘flexbar_3.5.0-6.dsc’ saved [2037/2037] Mon Mar 24 18:50:11 UTC 2025 I: flexbar_3.5.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: flexbar Binary: flexbar Architecture: any Version: 1:3.5.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Tony Travis Homepage: https://github.com/seqan/flexbar Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/flexbar Vcs-Git: https://salsa.debian.org/med-team/flexbar.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev (= 2.5.0~rc3+dfsg-1), zlib1g-dev, libbz2-dev Package-List: flexbar deb science optional arch=any Checksums-Sha1: 0c43550b73a08effdd3a7965e916dc9c6b64f8b2 44021 flexbar_3.5.0.orig.tar.gz b1ba8b8dd46d4251f25ac7f2c8747aadb0d08613 14468 flexbar_3.5.0-6.debian.tar.xz Checksums-Sha256: 656168934b6cb367ee6d4adad0c40506bc107c888d129fe191c6f3f3446a4ac9 44021 flexbar_3.5.0.orig.tar.gz 494d9a81d195d894e43189da7c749a709a0ca82dd73571451823d779fc30d5a2 14468 flexbar_3.5.0-6.debian.tar.xz Files: 0e07bf4afebfd731c4718b401383224a 44021 flexbar_3.5.0.orig.tar.gz a9e63945096699faf95aeafef7da32a7 14468 flexbar_3.5.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdF6v0ACgkQPCZ2P2xn 5uKaNA/8Do4W5drn3xRY1JhVK3oTt3JNcjMki/730nhMh+r5xyvxtS4pixl/L38X o04eWkNG+W66KrSoeTsaFMNUQCHCWJFB+9yOyReMeTC/IfEHi+xj1GUgO0wpyRca g5vvQkeyvRxUjDDEU2rCSPt6iL1bGSeqVTNvPtGdHT0Wu1+JEEuRdwncAGbhVQY0 ZLR6Js9TIGIqAWQBEGQDzHS/vDuhV0ICTwt+kdMqHaKilLiEE0sC2kwHvvedafnP qjVqiQHtP72aICPufBxNeAJS6p+Vvwf/+qfg6sh2GSejrfKgng9sTzgUqXAYw2S9 hPpSUewagus+k3+01HFGFu0CZZPx08C2N3JnxDLBR1S1Zj5P7WdLOgYC1fyzofiU Ijo5EZ2FyKT3Q0MFdmhmLHtwV+AV/Y3vhcaFwuaXBSGFa7mEIPck4mJl9Mc+c1HD BDVJSmra9POd8csOlr/VDw67Yx1f/VLVgZFLP1yjtvAaySDMsyCzrjY6c9EfAeLv unWOUpIAxxJOMYB/kENJHoAicUVjVpGjAoiNN9oFLNPJmtaLlHGtdPGYFugRPSSa YSz7IzftP+tlzqF/PZks1FgTyGW2QWN7oIjyDN2YeiQUM95CZXzcQ4G7LbA6E7dY 1VUQTBA54rGzMJdSqlyLveSrns3vwqvPTCN5jvp4cRE2qS9he9g= =2WN7 -----END PGP SIGNATURE----- Mon Mar 24 18:50:11 UTC 2025 I: Checking whether the package is not for us Mon Mar 24 18:50:11 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Mon Mar 24 18:50:11 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Mon Mar 24 18:56:45 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 24 06:50:14 -12 2025 I: pbuilder-time-stamp: 1742842214 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [flexbar_3.5.0-6.dsc] I: copying [./flexbar_3.5.0.orig.tar.gz] I: copying [./flexbar_3.5.0-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./flexbar_3.5.0-6.dsc: unsupported subcommand dpkg-source: info: extracting flexbar in flexbar-3.5.0 dpkg-source: info: unpacking flexbar_3.5.0.orig.tar.gz dpkg-source: info: unpacking flexbar_3.5.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_march_native.patch dpkg-source: info: applying 195a1ab2c2715b07df5acff58dc2a0396d9cd52d.patch dpkg-source: info: applying 1c872fa10d474f090633fc95d409aa60607a3f96.patch dpkg-source: info: applying 19722f2743c96235ff57948eda82f963cf734131.patch dpkg-source: info: applying a9b0eb87a391aeaf760f8116dca777749c8b4f96.patch dpkg-source: info: applying 0006-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2752992/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b075a0cb7aca48d0a6720d1430f425ea' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2752992' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/pbuilderrc_rJ8B --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/b1 --logfile b1/build.log flexbar_3.5.0-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2752992/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev (= 2.5.0~rc3+dfsg-1), zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19807 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhwloc15{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 42.5 MB of archives. After unpacking 156 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhwloc15{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 43.7 MB of archives. After unpacking 169 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0~rc2-2 [380 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get: 63 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.0.0-2 [14.6 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.0.0-2 [49.3 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.0.0-2 [91.0 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtbb-dev amd64 2022.0.0-2 [199 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 43.7 MB in 5s (8985 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19807 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/flexbar-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flexbar_3.5.0-6_source.changes dpkg-buildpackage: info: source package flexbar dpkg-buildpackage: info: source version 1:3.5.0-6 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0' dh_auto_clean rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Flexbar 64 bit architecture -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Configuring done (3.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/flexbar-3.5.0 -B/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend make[3]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/flexbar-3.5.0 /build/reproducible-path/flexbar-3.5.0/src /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/src /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/src/CMakeFiles/flexbar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build make[3]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' [ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o cd /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -I/build/reproducible-path/flexbar-3.5.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/flexbar-3.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT src/CMakeFiles/flexbar.dir/Flexbar.cpp.o -MF CMakeFiles/flexbar.dir/Flexbar.cpp.o.d -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /build/reproducible-path/flexbar-3.5.0/src/Flexbar.cpp [100%] Linking CXX executable ../flexbar cd /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flexbar-3.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/flexbar.dir/link.d CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar -lpthread /usr/lib/x86_64-linux-gnu/libtbb.so.12.14 -lz -lbz2 make[3]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' [100%] Built target flexbar make[2]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0' cd test ; \ export PATH="/build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu:$PATH" ; \ echo $PATH ; \ export HOME=/tmp ; \ which flexbar ; \ ./flexbar_test.sh /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /build/reproducible-path/flexbar-3.5.0/obj-x86_64-linux-gnu/flexbar Testing fasta: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing fastq: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing decompression: Test gzip OK Test bzip2 OK rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/flexbar/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'flexbar-dbgsym' in '../flexbar-dbgsym_3.5.0-6_amd64.deb'. dpkg-deb: building package 'flexbar' in '../flexbar_3.5.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../flexbar_3.5.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../flexbar_3.5.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2752992 and its subdirectories I: Current time: Mon Mar 24 06:56:44 -12 2025 I: pbuilder-time-stamp: 1742842604 Mon Mar 24 18:56:46 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon Mar 24 18:56:46 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon Mar 24 18:59:18 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon Mar 24 18:59:19 UTC 2025 I: flexbar_3.5.0-6_amd64.changes: Format: 1.8 Date: Tue, 26 Nov 2024 16:04:46 +0100 Source: flexbar Binary: flexbar flexbar-dbgsym Architecture: amd64 Version: 1:3.5.0-6 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: flexbar - flexible barcode and adapter removal for sequencing platforms Changes: flexbar (1:3.5.0-6) experimental; urgency=medium . * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. * salsa ci: allow reprotest to fail Checksums-Sha1: 041b22f1894d9a064e374b2d6066b27cceec2fc8 4403252 flexbar-dbgsym_3.5.0-6_amd64.deb bf77ebd808297a152f7be3a0bd9144c01f9909f1 6099 flexbar_3.5.0-6_amd64.buildinfo d08607adffc7619014ceb7b2f3b3ae3fec9a91bd 380056 flexbar_3.5.0-6_amd64.deb Checksums-Sha256: 0af1c35580d2d070f3daf09cf259a170ffd74412e02c0c10ea33168afde14ffe 4403252 flexbar-dbgsym_3.5.0-6_amd64.deb adc43a384dfa61e9951a98f57083719aa6970721057cf86c24e43cde512087b8 6099 flexbar_3.5.0-6_amd64.buildinfo c568f44d2d11e8b82fd7e81c46f0650e72ff7458ee9ef6e88cc7487294041e7a 380056 flexbar_3.5.0-6_amd64.deb Files: ab40678881b63036ed372b121c472c7d 4403252 debug optional flexbar-dbgsym_3.5.0-6_amd64.deb 55a706ce22808741eda2ed1d35e56d1e 6099 science optional flexbar_3.5.0-6_amd64.buildinfo dcf22918f5ed3a0ea912bd1261c294b2 380056 science optional flexbar_3.5.0-6_amd64.deb Mon Mar 24 18:59:20 UTC 2025 I: diffoscope 291 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_3-48338.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/flexbar_3.5.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/flexbar_3.5.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/flexbar_3.5.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/b1/flexbar_3.5.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.O27EJyaQ/b2/flexbar_3.5.0-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 224ms CPU time consumed: 224ms Mon Mar 24 18:59:20 UTC 2025 I: diffoscope 291 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 24 18:59:20 UTC 2025 I: flexbar from experimental built successfully and reproducibly on amd64. Mon Mar 24 18:59:21 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Mar 24 18:59:21 UTC 2025 I: Submitting 8.0K b1/flexbar_3.5.0-6_amd64.buildinfo.asc Mon Mar 24 18:59:23 UTC 2025 I: Submitting 8.0K b2/flexbar_3.5.0-6_amd64.buildinfo.asc Mon Mar 24 18:59:24 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 24 18:59:24 UTC 2025 I: Done submitting .buildinfo files. Mon Mar 24 18:59:24 UTC 2025 I: Removing signed flexbar_3.5.0-6_amd64.buildinfo.asc files: removed './b1/flexbar_3.5.0-6_amd64.buildinfo.asc' removed './b2/flexbar_3.5.0-6_amd64.buildinfo.asc'